HEADER HYDROLASE 16-FEB-18 5ZCD TITLE CRYSTAL STRUCTURE OF ALPHA-GLUCOSIDASE IN COMPLEX WITH MALTOTRIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP.; SOURCE 3 ORGANISM_TAXID: 1409; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-GLUCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.KATO,W.SABURI,M.YAO REVDAT 3 22-NOV-23 5ZCD 1 HETSYN REVDAT 2 29-JUL-20 5ZCD 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 HETSYN FORMUL LINK SITE REVDAT 2 3 1 ATOM REVDAT 1 26-DEC-18 5ZCD 0 JRNL AUTH W.AUIEWIRIYANUKUL,W.SABURI,K.KATO,M.YAO,H.MORI JRNL TITL FUNCTION AND STRUCTURE OF GH13_31 ALPHA-GLUCOSIDASE WITH JRNL TITL 2 HIGH ALPHA-(1→4)-GLUCOSIDIC LINKAGE SPECIFICITY AND JRNL TITL 3 TRANSGLUCOSYLATION ACTIVITY. JRNL REF FEBS LETT. V. 592 2268 2018 JRNL REFN ISSN 1873-3468 JRNL PMID 29870070 JRNL DOI 10.1002/1873-3468.13126 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 66613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5214 - 4.9207 1.00 2866 150 0.1654 0.1655 REMARK 3 2 4.9207 - 3.9063 1.00 2716 143 0.1421 0.1679 REMARK 3 3 3.9063 - 3.4127 1.00 2702 144 0.1566 0.1828 REMARK 3 4 3.4127 - 3.1008 1.00 2669 139 0.1687 0.1890 REMARK 3 5 3.1008 - 2.8786 1.00 2678 138 0.1770 0.2159 REMARK 3 6 2.8786 - 2.7089 1.00 2651 137 0.1816 0.2127 REMARK 3 7 2.7089 - 2.5732 1.00 2658 137 0.1800 0.1923 REMARK 3 8 2.5732 - 2.4612 1.00 2632 149 0.1768 0.2005 REMARK 3 9 2.4612 - 2.3665 1.00 2644 133 0.1719 0.2335 REMARK 3 10 2.3665 - 2.2848 1.00 2636 141 0.1722 0.2031 REMARK 3 11 2.2848 - 2.2134 1.00 2628 140 0.1741 0.2279 REMARK 3 12 2.2134 - 2.1501 1.00 2617 133 0.1822 0.2286 REMARK 3 13 2.1501 - 2.0935 1.00 2659 135 0.1816 0.2183 REMARK 3 14 2.0935 - 2.0424 1.00 2608 145 0.1771 0.2258 REMARK 3 15 2.0424 - 1.9960 1.00 2611 136 0.1856 0.1988 REMARK 3 16 1.9960 - 1.9535 1.00 2626 135 0.1891 0.2188 REMARK 3 17 1.9535 - 1.9144 1.00 2592 130 0.1975 0.2629 REMARK 3 18 1.9144 - 1.8783 1.00 2626 150 0.2028 0.2301 REMARK 3 19 1.8783 - 1.8448 1.00 2611 137 0.2183 0.2624 REMARK 3 20 1.8448 - 1.8135 1.00 2616 139 0.2336 0.2763 REMARK 3 21 1.8135 - 1.7842 1.00 2628 139 0.2502 0.2695 REMARK 3 22 1.7842 - 1.7568 1.00 2601 132 0.2598 0.2835 REMARK 3 23 1.7568 - 1.7309 1.00 2584 145 0.2722 0.2888 REMARK 3 24 1.7309 - 1.7066 0.92 2419 128 0.2847 0.3444 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4651 REMARK 3 ANGLE : 1.041 6303 REMARK 3 CHIRALITY : 0.042 655 REMARK 3 PLANARITY : 0.005 810 REMARK 3 DIHEDRAL : 13.002 1722 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006841. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66627 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.67500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ZE0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, CALCIUM CHLORIDE, PH 7, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.81400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.25700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.37250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.25700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.81400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.37250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 ASP A 289 REMARK 465 LYS A 290 REMARK 465 GLY A 291 REMARK 465 GLU A 292 REMARK 465 GLU A 293 REMARK 465 GLU A 518 REMARK 465 SER A 519 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1397 O HOH A 1398 1.90 REMARK 500 O HOH A 1049 O HOH A 1253 1.98 REMARK 500 OD1 ASP A 70 O HOH A 701 1.98 REMARK 500 OD1 ASN A 387 O HOH A 702 1.98 REMARK 500 O HOH A 1344 O HOH A 1393 2.01 REMARK 500 OE2 GLU A 183 O HOH A 703 2.02 REMARK 500 OD2 ASP A 70 O HOH A 704 2.03 REMARK 500 O HOH A 780 O HOH A 982 2.04 REMARK 500 O HOH A 1163 O HOH A 1334 2.07 REMARK 500 O HOH A 1355 O HOH A 1376 2.07 REMARK 500 O HOH A 1170 O HOH A 1243 2.07 REMARK 500 OH TYR A 122 O HOH A 705 2.11 REMARK 500 OD1 ASP A 378 O HOH A 706 2.13 REMARK 500 OE1 GLU A 267 O HOH A 707 2.17 REMARK 500 OE1 GLU A 447 O HOH A 708 2.18 REMARK 500 O HOH A 1229 O HOH A 1369 2.18 REMARK 500 O HOH A 727 O HOH A 1060 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1136 O HOH A 1185 4566 1.92 REMARK 500 O HOH A 847 O HOH A 1279 3556 2.08 REMARK 500 O HOH A 710 O HOH A 997 4466 2.16 REMARK 500 O HOH A 1337 O HOH A 1390 3546 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 295 C - N - CA ANGL. DEV. = -12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 135 -169.46 -126.25 REMARK 500 SER A 145 161.19 76.45 REMARK 500 PHE A 163 -132.85 -102.31 REMARK 500 HIS A 228 -2.16 -149.72 REMARK 500 THR A 245 -78.50 -129.99 REMARK 500 ASP A 381 -30.39 -137.46 REMARK 500 GLU A 496 -117.53 57.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 294 PRO A 295 149.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1398 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1399 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1400 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A1401 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A1402 DISTANCE = 6.24 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD1 REMARK 620 2 ASN A 23 OD1 80.1 REMARK 620 3 ASP A 25 OD1 85.8 86.9 REMARK 620 4 ILE A 27 O 83.9 163.5 87.5 REMARK 620 5 ASP A 29 OD2 86.8 89.9 172.3 93.7 REMARK 620 6 HOH A 742 O 166.5 104.7 81.9 89.9 105.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 173 OE1 REMARK 620 2 HOH A 729 O 88.3 REMARK 620 3 HOH A 972 O 105.2 149.3 REMARK 620 4 HOH A1203 O 82.2 136.0 74.0 REMARK 620 5 HOH A1217 O 94.7 77.6 74.0 145.8 REMARK 620 6 HOH A1223 O 90.9 62.9 141.9 74.3 139.9 REMARK 620 7 HOH A1353 O 172.5 84.4 82.1 101.8 85.4 84.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 534 OD2 REMARK 620 2 GLU A 537 OE2 84.0 REMARK 620 3 THR A 543 O 140.7 99.6 REMARK 620 4 THR A 543 OG1 145.4 82.5 73.1 REMARK 620 5 HOH A 844 O 73.9 91.2 67.0 137.9 REMARK 620 6 HOH A1080 O 75.9 99.2 140.3 75.1 146.7 REMARK 620 7 HOH A1168 O 101.2 171.7 80.6 89.7 96.5 76.0 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ZCB RELATED DB: PDB REMARK 900 ~ CONTAINS THE SAME PROTEIN IN SUBSTARATE FREE-FORM. REMARK 900 RELATED ID: 5ZCC RELATED DB: PDB REMARK 900 ~ CONTAINS THE SAME PROTEIN IN COMPLEX WITH MALTOSE. DBREF 5ZCD A 1 555 PDB 5ZCD 5ZCD 1 555 SEQRES 1 A 555 MET GLU LYS LYS TRP TRP LYS GLU ALA VAL ALA TYR GLN SEQRES 2 A 555 ILE TYR PRO ARG SER PHE MET ASP SER ASN GLY ASP GLY SEQRES 3 A 555 ILE GLY ASP ILE GLN GLY VAL ILE SER LYS LEU ASP TYR SEQRES 4 A 555 LEU SER ASP LEU GLY ILE ASP VAL ILE TRP ILE CYS PRO SEQRES 5 A 555 ILE TYR GLN SER PRO ASN ASP ASP ASN GLY TYR ASP ILE SEQRES 6 A 555 SER ASP TYR LYS ASP ILE MET LYS ASP PHE GLY THR MET SEQRES 7 A 555 GLU ASP PHE ASP GLU LEU LEU ASP GLU VAL HIS HIS ARG SEQRES 8 A 555 GLY MET LYS LEU ILE MET ASP LEU VAL ILE ASN HIS THR SEQRES 9 A 555 SER ASP GLU HIS PRO TRP PHE LEU GLU SER ARG SER ALA SEQRES 10 A 555 LYS GLU ASN PRO TYR ARG ASP TYR TYR ILE TRP HIS GLU SEQRES 11 A 555 GLY LYS ASP GLY LYS GLU PRO ASN ASN TRP GLU SER ILE SEQRES 12 A 555 PHE SER GLY SER ALA TRP GLU PHE ASP GLU LYS THR LYS SEQRES 13 A 555 GLU TYR TYR MET HIS VAL PHE SER LYS LYS GLN PRO ASP SEQRES 14 A 555 LEU ASN TRP GLU ASN GLU LYS VAL ARG HIS GLU LEU TYR SEQRES 15 A 555 GLU MET VAL ASN TRP TRP LEU ASP LYS GLY ILE ASP GLY SEQRES 16 A 555 PHE ARG VAL ASP ALA ILE SER HIS ILE LYS LYS VAL ALA SEQRES 17 A 555 GLY PHE PRO ASP LEU PRO ASN PRO GLU LYS LEU ASP TYR SEQRES 18 A 555 VAL PRO SER PHE GLU GLY HIS MET ASN ARG PRO GLY ILE SEQRES 19 A 555 GLN GLU HIS LEU LYS GLU LEU LYS GLU LYS THR PHE ALA SEQRES 20 A 555 LYS TYR ASP ILE MET THR VAL GLY GLN ALA ASN GLY VAL SEQRES 21 A 555 THR SER ASP SER ALA ASP GLU TRP VAL ALA GLU ASP GLY SEQRES 22 A 555 GLY ASN PHE ASN MET ILE PHE GLN PHE GLU HIS MET GLY SEQRES 23 A 555 LEU TRP ASP LYS GLY GLU GLU LYS PRO LEU ASP LEU ILE SEQRES 24 A 555 GLU LEU LYS THR ILE LEU THR ASN TRP GLN ASN GLY LEU SEQRES 25 A 555 GLU LYS ILE ASN GLY TRP ASN ALA LEU TYR LEU GLU ASN SEQRES 26 A 555 HIS ASP GLN ILE ARG SER VAL ASN LYS PHE GLY SER THR SEQRES 27 A 555 ALA TYR ARG VAL GLU SER ALA LYS CYS LEU ALA ALA LEU SEQRES 28 A 555 TYR PHE LEU MET LYS GLY THR PRO PHE ILE TYR GLN GLY SEQRES 29 A 555 GLN GLU LEU GLY MET THR ASN VAL LYS PHE ASP SER ILE SEQRES 30 A 555 ASP ASP TYR ASP ASP VAL GLY MET ILE ASN TYR TYR ARG SEQRES 31 A 555 ILE GLN ARG GLU LYS GLY ASP SER HIS ASP GLU ILE MET SEQRES 32 A 555 LYS VAL ILE TRP GLU THR GLY ARG ASP ASN SER ARG THR SEQRES 33 A 555 PRO MET GLN TRP ASN THR GLU LYS ASN ALA GLY PHE SER SEQRES 34 A 555 THR GLY ASN PRO TRP MET LYS VAL ASN PRO ASN TYR VAL SEQRES 35 A 555 ASP ILE ASN VAL GLU GLU GLN LYS SER ASP LYS ASN SER SEQRES 36 A 555 VAL LEU ASN PHE TYR LYS GLN LEU ILE LYS ILE ARG LYS SEQRES 37 A 555 GLN HIS ASP VAL LEU VAL TYR GLY THR TYR LYS LEU LEU SEQRES 38 A 555 ALA GLU GLU ASP SER ALA ILE TYR ALA TYR THR ARG THR SEQRES 39 A 555 LEU GLU GLY LYS THR ALA VAL VAL ILE CYS ASN MET SER SEQRES 40 A 555 PRO ASN ASN GLN THR PHE GLU PHE PRO SER GLU SER SER SEQRES 41 A 555 PHE THR ASN ILE GLU VAL LEU ILE HIS ASN TYR PRO LEU SEQRES 42 A 555 ASP LYS ASN GLU THR LEU GLU GLN CYS THR LEU HIS PRO SEQRES 43 A 555 TYR GLU THR ARG VAL TYR LEU ILE SER HET GLC B 1 12 HET GLC B 2 11 HET GLC B 3 11 HET CA A 602 1 HET CA A 603 1 HET CA A 604 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 3(C6 H12 O6) FORMUL 3 CA 3(CA 2+) FORMUL 6 HOH *702(H2 O) HELIX 1 AA1 LYS A 4 ALA A 9 1 6 HELIX 2 AA2 TYR A 15 PHE A 19 5 5 HELIX 3 AA3 ASP A 29 LYS A 36 1 8 HELIX 4 AA4 LYS A 36 GLY A 44 1 9 HELIX 5 AA5 THR A 77 ARG A 91 1 15 HELIX 6 AA6 HIS A 108 ALA A 117 1 10 HELIX 7 AA7 TYR A 122 TYR A 126 5 5 HELIX 8 AA8 ASN A 174 ASP A 190 1 17 HELIX 9 AA9 ALA A 200 ILE A 204 5 5 HELIX 10 AB1 SER A 224 MET A 229 1 6 HELIX 11 AB2 GLY A 233 THR A 245 1 13 HELIX 12 AB3 PHE A 246 TYR A 249 5 4 HELIX 13 AB4 ALA A 265 ALA A 270 1 6 HELIX 14 AB5 PHE A 282 GLY A 286 5 5 HELIX 15 AB6 ASP A 297 ILE A 315 1 19 HELIX 16 AB7 ARG A 330 GLY A 336 1 7 HELIX 17 AB8 SER A 337 ALA A 339 5 3 HELIX 18 AB9 TYR A 340 LEU A 354 1 15 HELIX 19 AC1 GLY A 364 GLY A 368 5 5 HELIX 20 AC2 SER A 376 TYR A 380 5 5 HELIX 21 AC3 ASP A 382 GLY A 396 1 15 HELIX 22 AC4 SER A 398 GLY A 410 1 13 HELIX 23 AC5 ARG A 411 ARG A 415 5 5 HELIX 24 AC6 GLU A 423 PHE A 428 5 6 HELIX 25 AC7 ASN A 438 ASP A 443 5 6 HELIX 26 AC8 ASN A 445 ASP A 452 1 8 HELIX 27 AC9 SER A 455 HIS A 470 1 16 HELIX 28 AD1 ASP A 471 GLY A 476 1 6 SHEET 1 AA1 8 MET A 278 PHE A 280 0 SHEET 2 AA1 8 MET A 252 GLN A 256 1 N GLY A 255 O PHE A 280 SHEET 3 AA1 8 GLY A 195 VAL A 198 1 N VAL A 198 O GLN A 256 SHEET 4 AA1 8 LYS A 94 LEU A 99 1 N LEU A 99 O ARG A 197 SHEET 5 AA1 8 VAL A 47 ILE A 50 1 N ILE A 48 O ILE A 96 SHEET 6 AA1 8 ALA A 11 ILE A 14 1 N ILE A 14 O TRP A 49 SHEET 7 AA1 8 THR A 358 TYR A 362 1 O ILE A 361 N GLN A 13 SHEET 8 AA1 8 ALA A 320 LEU A 321 1 N LEU A 321 O PHE A 360 SHEET 1 AA2 2 TYR A 54 GLN A 55 0 SHEET 2 AA2 2 ASP A 67 ILE A 71 -1 O ASP A 70 N GLN A 55 SHEET 1 AA3 3 TRP A 128 HIS A 129 0 SHEET 2 AA3 3 GLU A 157 MET A 160 -1 O TYR A 158 N HIS A 129 SHEET 3 AA3 3 TRP A 149 ASP A 152 -1 N GLU A 150 O TYR A 159 SHEET 1 AA4 2 TRP A 140 GLU A 141 0 SHEET 2 AA4 2 VAL A 222 PRO A 223 1 O VAL A 222 N GLU A 141 SHEET 1 AA5 5 THR A 477 LEU A 481 0 SHEET 2 AA5 5 ILE A 488 LEU A 495 -1 O ALA A 490 N LEU A 481 SHEET 3 AA5 5 LYS A 498 ASN A 505 -1 O ALA A 500 N ARG A 493 SHEET 4 AA5 5 THR A 549 SER A 555 -1 O ILE A 554 N THR A 499 SHEET 5 AA5 5 ASN A 523 HIS A 529 -1 N GLU A 525 O LEU A 553 SHEET 1 AA6 2 GLN A 511 GLU A 514 0 SHEET 2 AA6 2 GLN A 541 LEU A 544 -1 O LEU A 544 N GLN A 511 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.43 LINK O4 GLC B 2 C1 GLC B 3 1555 1555 1.43 LINK OD1 ASP A 21 CA CA A 602 1555 1555 2.31 LINK OD1 ASN A 23 CA CA A 602 1555 1555 2.42 LINK OD1 ASP A 25 CA CA A 602 1555 1555 2.38 LINK O ILE A 27 CA CA A 602 1555 1555 2.34 LINK OD2 ASP A 29 CA CA A 602 1555 1555 2.37 LINK OE1 GLU A 173 CA CA A 604 1555 1555 2.34 LINK OD2 ASP A 534 CA CA A 603 1555 1555 2.33 LINK OE2 GLU A 537 CA CA A 603 1555 1555 2.40 LINK O THR A 543 CA CA A 603 1555 1555 2.39 LINK OG1 THR A 543 CA CA A 603 1555 1555 2.42 LINK CA CA A 602 O HOH A 742 1555 1555 2.43 LINK CA CA A 603 O HOH A 844 1555 1555 2.48 LINK CA CA A 603 O HOH A1080 1555 1555 2.42 LINK CA CA A 603 O HOH A1168 1555 1555 2.36 LINK CA CA A 604 O HOH A 729 1555 1555 2.67 LINK CA CA A 604 O HOH A 972 1555 1555 2.56 LINK CA CA A 604 O HOH A1203 1555 1555 2.55 LINK CA CA A 604 O HOH A1217 1555 1555 2.22 LINK CA CA A 604 O HOH A1223 1555 1555 2.51 LINK CA CA A 604 O HOH A1353 1555 1555 2.43 CRYST1 55.628 84.745 128.514 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017977 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007781 0.00000