HEADER HYDROLASE 23-FEB-18 5ZDF TITLE CRYSTAL STRUCTURE OF POLY(ADP-RIBOSE) GLYCOHYDROLASE (PARG) T267K TITLE 2 MUTANT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH ADP-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY ADP-RIBOSE GLYCOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS (STRAIN ATCC 13939 / SOURCE 3 DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / SOURCE 4 VKM B-1422); SOURCE 5 ORGANISM_TAXID: 243230; SOURCE 6 STRAIN: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / SOURCE 7 NCIMB 9279 / R1 / VKM B-1422; SOURCE 8 GENE: DR_B0099; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ADP-RIBOSE, POLY(ADP-RIBOSE) GLYCOHYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.C.CHO,C.H.HSU REVDAT 3 27-MAR-24 5ZDF 1 REMARK REVDAT 2 11-MAR-20 5ZDF 1 JRNL HETSYN REVDAT 1 27-FEB-19 5ZDF 0 JRNL AUTH C.C.CHO,C.Y.CHIEN,Y.C.CHIU,M.H.LIN,C.H.HSU JRNL TITL STRUCTURAL AND BIOCHEMICAL EVIDENCE SUPPORTING POLY JRNL TITL 2 ADP-RIBOSYLATION IN THE BACTERIUM DEINOCOCCUS RADIODURANS. JRNL REF NAT COMMUN V. 10 1491 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30940816 JRNL DOI 10.1038/S41467-019-09153-6 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.9 REMARK 3 NUMBER OF REFLECTIONS : 9874 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4511 - 5.5568 1.00 1647 180 0.1782 0.2190 REMARK 3 2 5.5568 - 4.4159 1.00 1641 186 0.1743 0.2088 REMARK 3 3 4.4159 - 3.8593 1.00 1663 175 0.1678 0.2255 REMARK 3 4 3.8593 - 3.5071 1.00 1623 188 0.1931 0.2427 REMARK 3 5 3.5071 - 3.2561 0.97 1636 182 0.2196 0.3095 REMARK 3 6 3.2561 - 3.0644 0.84 1388 153 0.2464 0.3169 REMARK 3 7 3.0644 - 2.9111 0.72 1164 135 0.2443 0.2664 REMARK 3 8 2.9111 - 2.7845 0.65 1081 103 0.2445 0.2859 REMARK 3 9 2.7845 - 2.6773 0.55 915 95 0.2652 0.3399 REMARK 3 10 2.6773 - 2.5850 0.41 661 83 0.2717 0.2505 REMARK 3 11 2.5850 - 2.5042 0.31 508 61 0.2590 0.2772 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1997 REMARK 3 ANGLE : 1.050 2719 REMARK 3 CHIRALITY : 0.050 297 REMARK 3 PLANARITY : 0.007 361 REMARK 3 DIHEDRAL : 8.271 1189 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5428 -22.8542 -14.2799 REMARK 3 T TENSOR REMARK 3 T11: 0.4560 T22: 0.3332 REMARK 3 T33: 0.3643 T12: 0.1954 REMARK 3 T13: 0.0242 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 6.5443 L22: 1.2491 REMARK 3 L33: 2.1505 L12: 2.8219 REMARK 3 L13: -2.3440 L23: -0.8700 REMARK 3 S TENSOR REMARK 3 S11: -0.1648 S12: -0.3468 S13: -0.3018 REMARK 3 S21: -0.1799 S22: -0.0883 S23: -0.2446 REMARK 3 S31: 0.0937 S32: -0.1796 S33: 0.2779 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3792 -3.3800 -14.2444 REMARK 3 T TENSOR REMARK 3 T11: 0.9276 T22: 0.4023 REMARK 3 T33: 0.4814 T12: 0.3991 REMARK 3 T13: -0.1839 T23: -0.1449 REMARK 3 L TENSOR REMARK 3 L11: 1.6155 L22: 1.5808 REMARK 3 L33: 2.1644 L12: 0.0238 REMARK 3 L13: -0.2546 L23: 0.8879 REMARK 3 S TENSOR REMARK 3 S11: -0.5192 S12: -0.0883 S13: 0.6002 REMARK 3 S21: -0.3038 S22: 0.0594 S23: 0.1813 REMARK 3 S31: -1.0645 S32: -0.1645 S33: 0.2348 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4934 -19.4342 -3.4250 REMARK 3 T TENSOR REMARK 3 T11: 0.5985 T22: 0.4899 REMARK 3 T33: 0.2961 T12: 0.3006 REMARK 3 T13: -0.0048 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 5.6431 L22: 3.5969 REMARK 3 L33: 0.3999 L12: -0.7351 REMARK 3 L13: -0.7200 L23: -0.2361 REMARK 3 S TENSOR REMARK 3 S11: -0.1893 S12: -1.1455 S13: -0.1471 REMARK 3 S21: 0.8491 S22: 0.0513 S23: -0.2626 REMARK 3 S31: -0.0129 S32: 0.0073 S33: 0.1635 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9166 -16.5206 -8.0332 REMARK 3 T TENSOR REMARK 3 T11: 0.4778 T22: 0.4880 REMARK 3 T33: 0.3431 T12: 0.2814 REMARK 3 T13: -0.0254 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 2.7453 L22: 1.4412 REMARK 3 L33: 1.9178 L12: 1.3593 REMARK 3 L13: 1.0756 L23: 0.2615 REMARK 3 S TENSOR REMARK 3 S11: 0.0103 S12: -0.7789 S13: -0.1550 REMARK 3 S21: 0.0086 S22: -0.1029 S23: -0.0061 REMARK 3 S31: -0.1044 S32: -0.3000 S33: 0.1204 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1537 -6.4759 -8.7142 REMARK 3 T TENSOR REMARK 3 T11: 0.6040 T22: 0.2325 REMARK 3 T33: 0.2396 T12: 0.1405 REMARK 3 T13: -0.0289 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 3.4341 L22: 0.9059 REMARK 3 L33: 3.7431 L12: 1.5045 REMARK 3 L13: 2.7599 L23: 1.1439 REMARK 3 S TENSOR REMARK 3 S11: -0.0586 S12: -0.0264 S13: 0.3340 REMARK 3 S21: -0.5120 S22: 0.1869 S23: -0.0262 REMARK 3 S31: -0.5530 S32: 0.4042 S33: 0.0532 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7605 -0.0394 -6.4264 REMARK 3 T TENSOR REMARK 3 T11: 1.1764 T22: -0.0151 REMARK 3 T33: 0.5677 T12: 0.5458 REMARK 3 T13: -0.2789 T23: -0.0392 REMARK 3 L TENSOR REMARK 3 L11: 2.1970 L22: 1.3996 REMARK 3 L33: 1.3079 L12: -0.4234 REMARK 3 L13: 0.0261 L23: -0.6419 REMARK 3 S TENSOR REMARK 3 S11: -0.0704 S12: -0.8719 S13: 1.0091 REMARK 3 S21: 0.2047 S22: -0.3128 S23: 0.1542 REMARK 3 S31: -1.5636 S32: 0.3226 S33: 0.3156 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 266 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9873 7.5060 -1.1559 REMARK 3 T TENSOR REMARK 3 T11: 1.4181 T22: 0.6713 REMARK 3 T33: 0.9179 T12: 0.3519 REMARK 3 T13: -0.3601 T23: -0.2454 REMARK 3 L TENSOR REMARK 3 L11: 1.6228 L22: 4.1640 REMARK 3 L33: 3.7049 L12: 0.6697 REMARK 3 L13: -1.7860 L23: 1.3891 REMARK 3 S TENSOR REMARK 3 S11: 0.1321 S12: 0.1962 S13: 0.7456 REMARK 3 S21: -0.8502 S22: -0.0493 S23: 0.3898 REMARK 3 S31: -0.8829 S32: -0.3412 S33: -0.0110 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300005630. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10823 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.504 REMARK 200 RESOLUTION RANGE LOW (A) : 28.449 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.50800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.259 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE PH 5.2, 20 % 2-PROPANOL, 20% POLYETHYLENE GLYCOL 4000, REMARK 280 10 MM HEXAMMINE COBALT (LLL) CHLORIDE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.28600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.64300 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.64300 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 87.28600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 410 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 416 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 420 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 104 REMARK 465 GLY A 105 REMARK 465 GLY A 106 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 72 NH1 ARG A 80 1.54 REMARK 500 OE1 GLU A 68 NH2 ARG A 80 2.02 REMARK 500 O GLY A 102 O HOH A 401 2.05 REMARK 500 O HOH A 419 O HOH A 421 2.05 REMARK 500 O GLY A 234 OG1 THR A 238 2.09 REMARK 500 CD GLU A 72 NH1 ARG A 80 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 144 -173.33 55.63 REMARK 500 ARG A 188 66.96 -165.53 REMARK 500 LEU A 220 -165.94 -110.61 REMARK 500 ASP A 260 90.30 -162.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 424 DISTANCE = 6.40 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AR6 A 301 DBREF 5ZDF A 29 279 UNP Q9RZM4 Q9RZM4_DEIRA 29 279 SEQADV 5ZDF LYS A 267 UNP Q9RZM4 THR 267 ENGINEERED MUTATION SEQRES 1 A 251 VAL ARG LEU PRO GLY LEU ALA ALA MET ARG GLN GLY THR SEQRES 2 A 251 ARG LEU PHE THR PRO GLU GLN GLY GLU ASP LEU ARG GLU SEQRES 3 A 251 ALA LEU ARG ARG ARG ARG GLY SER PHE GLN THR THR CYS SEQRES 4 A 251 GLU VAL THR SER GLU THR THR PHE ALA ALA ALA ARG ARG SEQRES 5 A 251 LEU ARG GLU LYS ALA SER ALA LEU ALA ALA LEU ASN PHE SEQRES 6 A 251 ALA SER ALA LYS ASN PRO GLY GLY GLY PHE LEU GLY GLY SEQRES 7 A 251 ALA GLN ALA GLN GLU GLU ASP LEU CYS ARG GLY SER GLY SEQRES 8 A 251 LEU TYR PHE SER LEU THR SER PRO GLN ALA GLU PRO TYR SEQRES 9 A 251 TYR ALA VAL ASN ARG GLN SER HIS SER ALA LEU TYR THR SEQRES 10 A 251 ASP HIS LEU ILE TYR SER PRO GLN VAL PRO ILE PHE ARG SEQRES 11 A 251 ASP ASP ALA GLY GLN LEU LEU PRO ALA PRO VAL PRO VAL SEQRES 12 A 251 ASN ILE ILE THR ALA PRO ALA PRO ASN ALA GLY ALA VAL SEQRES 13 A 251 ALA GLN SER ARG PRO GLU GLN LEU PRO GLN VAL LEU PRO SEQRES 14 A 251 THR LEU ARG GLU ARG ALA ARG ARG VAL LEU GLY VAL ALA SEQRES 15 A 251 ALA TRP MET GLU GLN THR HIS LEU VAL LEU GLY ALA TRP SEQRES 16 A 251 GLY CYS GLY VAL PHE ARG ASN ASP PRO ALA GLY VAL ALA SEQRES 17 A 251 ARG THR PHE ARG GLU LEU LEU GLU GLY GLU ALA GLN GLY SEQRES 18 A 251 ALA PHE GLU HIS VAL THR PHE ALA VAL LEU ASP ASN HIS SEQRES 19 A 251 PRO GLN HIS PRO LYS LEU GLY ALA PHE ARG ARG GLU LEU SEQRES 20 A 251 GLU SER LEU CYS HET AR6 A 301 36 HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 2 AR6 C15 H23 N5 O14 P2 FORMUL 3 HOH *24(H2 O) HELIX 1 AA1 GLY A 33 GLY A 40 1 8 HELIX 2 AA2 THR A 45 GLU A 47 5 3 HELIX 3 AA3 GLN A 48 ARG A 60 1 13 HELIX 4 AA4 THR A 73 GLU A 83 1 11 HELIX 5 AA5 ASN A 98 PHE A 103 5 6 HELIX 6 AA6 ALA A 109 GLY A 117 1 9 HELIX 7 AA7 GLY A 119 THR A 125 1 7 HELIX 8 AA8 ALA A 129 HIS A 140 1 12 HELIX 9 AA9 ASN A 180 ARG A 188 1 9 HELIX 10 AB1 PRO A 189 PRO A 193 5 5 HELIX 11 AB2 GLN A 194 MET A 213 1 20 HELIX 12 AB3 ASP A 231 GLY A 245 1 15 HELIX 13 AB4 HIS A 265 LEU A 275 1 11 SHEET 1 AA1 7 ARG A 42 PHE A 44 0 SHEET 2 AA1 7 LEU A 148 ARG A 158 -1 O TYR A 150 N ARG A 42 SHEET 3 AA1 7 LEU A 164 ALA A 176 -1 O THR A 175 N ILE A 149 SHEET 4 AA1 7 LEU A 88 PHE A 93 1 N ASN A 92 O ILE A 174 SHEET 5 AA1 7 HIS A 217 LEU A 220 1 O HIS A 217 N ALA A 89 SHEET 6 AA1 7 HIS A 253 ALA A 257 1 O HIS A 253 N LEU A 218 SHEET 7 AA1 7 THR A 66 THR A 70 1 N THR A 66 O VAL A 254 SITE 1 AC1 21 THR A 73 THR A 74 PHE A 93 SER A 95 SITE 2 AC1 21 GLY A 101 GLN A 108 ALA A 109 GLN A 110 SITE 3 AC1 21 GLU A 111 GLU A 112 ASP A 113 ALA A 222 SITE 4 AC1 21 GLY A 224 CYS A 225 GLY A 226 VAL A 227 SITE 5 AC1 21 PHE A 228 ALA A 257 LEU A 259 LYS A 267 SITE 6 AC1 21 HOH A 406 CRYST1 63.176 63.176 130.929 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015829 0.009139 0.000000 0.00000 SCALE2 0.000000 0.018278 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007638 0.00000