HEADER LIGASE 23-FEB-18 5ZDK TITLE CRYSTAL STRUCTURE ANALYSIS OF TTQRS IN COMPLEX WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NATIVE; COMPND 5 EC: 6.1.1.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: TTHA0549; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS GLNRS, QRS, LIGASE, SYNTHETASE EXPDTA X-RAY DIFFRACTION AUTHOR N.MUTHARASAPPAN,V.JAIN,A.SHARMA,Y.MANICKAM,J.JEYARAMAN REVDAT 2 22-NOV-23 5ZDK 1 LINK REVDAT 1 05-DEC-18 5ZDK 0 JRNL AUTH M.NACHIAPPAN,V.JAIN,A.SHARMA,M.YOGAVEL,J.JEYAKANTHAN JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF GLUTAMINYL-TRNA JRNL TITL 2 SYNTHETASE (TTGLNRS) FROM THERMUS THERMOPHILUS HB8 AND ITS JRNL TITL 3 COMPLEXES JRNL REF INT. J. BIOL. MACROMOL. V. 120 1379 2018 JRNL REFN ISSN 1879-0003 JRNL PMID 30248426 JRNL DOI 10.1016/J.IJBIOMAC.2018.09.115 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1129 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4389 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.25000 REMARK 3 B22 (A**2) : 7.27000 REMARK 3 B33 (A**2) : -1.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.605 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.270 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.200 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.078 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4550 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6196 ; 1.855 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 544 ; 7.398 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 227 ;31.737 ;22.555 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 741 ;18.045 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;20.463 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 654 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3559 ; 0.010 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5ZDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22079 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.59100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1QRU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CACODYLATE TRIHYDRATE PH 6.5, 30% W/V POLYETHYLENE GLYCOL 8,000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.33000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.70650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.33000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.70650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 544 REMARK 465 GLY A 545 REMARK 465 TYR A 546 REMARK 465 ARG A 547 REMARK 465 VAL A 548 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 PHE A 226 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 227 CG CD OE1 OE2 REMARK 470 ASN A 228 CG OD1 ND2 REMARK 470 ASN A 229 CG OD1 ND2 REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 THR A 231 OG1 CG2 REMARK 470 ASN A 317 CG OD1 ND2 REMARK 470 ARG A 368 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 397 NZ REMARK 470 GLU A 445 CD OE1 OE2 REMARK 470 ASP A 484 CG OD1 OD2 REMARK 470 GLN A 487 CG CD OE1 NE2 REMARK 470 LYS A 543 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 92 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 261 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 293 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 PRO A 437 C - N - CA ANGL. DEV. = 10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 23 -72.51 -63.98 REMARK 500 ILE A 169 -84.01 -120.38 REMARK 500 HIS A 188 71.24 -69.77 REMARK 500 PHE A 226 48.92 -90.32 REMARK 500 CYS A 244 34.32 39.84 REMARK 500 SER A 315 -179.22 -170.26 REMARK 500 GLU A 318 10.94 -64.32 REMARK 500 ALA A 319 132.65 -39.81 REMARK 500 ASN A 354 39.69 -90.51 REMARK 500 THR A 389 1.55 -69.13 REMARK 500 PRO A 396 -173.48 -69.80 REMARK 500 ARG A 401 -148.85 -119.37 REMARK 500 ALA A 413 -156.51 -160.41 REMARK 500 ALA A 533 72.06 -161.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 602 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 367 O REMARK 620 2 ILE A 370 O 71.7 REMARK 620 3 LYS A 372 O 118.6 65.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 601 O2B REMARK 620 2 ATP A 601 O2A 64.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 607 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QRU RELATED DB: PDB DBREF 5ZDK A 1 548 UNP Q5SKU4 Q5SKU4_THET8 1 548 SEQRES 1 A 548 MET GLY LEU VAL PRO GLU CYS PHE ILE THR GLU LEU VAL SEQRES 2 A 548 GLU ARG ASP LEU LYS GLU GLY LYS TYR ALA LYS LEU VAL SEQRES 3 A 548 THR ARG PHE PRO PRO GLU PRO ASN GLY TYR LEU HIS ILE SEQRES 4 A 548 GLY HIS ALA ARG SER ILE VAL LEU ASN PHE GLY LEU ALA SEQRES 5 A 548 GLN ASP TYR GLY GLY GLU CYS ASN LEU ARG PHE ASP ASP SEQRES 6 A 548 THR ASN PRO GLU THR GLU LYS GLU GLU TYR ALA ARG ALA SEQRES 7 A 548 ILE GLU GLU ASP VAL ARG TRP LEU GLY PHE ARG PRO THR SEQRES 8 A 548 ARG VAL LEU TYR ALA SER ASP TYR PHE GLU THR MET TYR SEQRES 9 A 548 GLN CYS ALA LEU VAL LEU ILE GLN GLU GLY LYS ALA TYR SEQRES 10 A 548 VAL ASP ASP LEU PRO GLU GLU GLU MET SER GLU LEU ARG SEQRES 11 A 548 ALA GLN GLY LYS PRO SER PRO TYR ARG GLU ARG SER VAL SEQRES 12 A 548 GLU GLU ASN LEU GLU LEU PHE GLU ARG MET ARG ARG GLY SEQRES 13 A 548 GLU PHE PRO THR GLY SER ARG VAL LEU ARG ALA LYS ILE SEQRES 14 A 548 ASP PRO ALA HIS PRO ASN PHE LYS LEU ARG ASP PRO VAL SEQRES 15 A 548 LEU TYR ARG ILE VAL HIS ALA PRO HIS TYR HIS VAL GLY SEQRES 16 A 548 ASP ARG TRP VAL ILE TYR PRO MET TYR ASP PHE ALA HIS SEQRES 17 A 548 PRO LEU GLU ASP PHE ILE GLU GLY VAL THR HIS SER LEU SEQRES 18 A 548 CYS THR LEU GLU PHE GLU ASN ASN ARG THR VAL TYR ASP SEQRES 19 A 548 TRP VAL ILE GLU ASN LEU LYS GLY LYS CYS GLY LEU PRO SEQRES 20 A 548 THR SER PRO ARG PRO HIS GLN TYR GLU PHE ALA ARG LEU SEQRES 21 A 548 ASP LEU SER HIS THR VAL LEU SER LYS ARG LYS LEU ILE SEQRES 22 A 548 LYS LEU VAL GLU GLY GLY TYR VAL SER GLY TRP ASP ASP SEQRES 23 A 548 PRO ARG LEU PRO THR LEU ARG GLY LEU ARG ARG ARG GLY SEQRES 24 A 548 VAL ARG PRO GLU ALA ILE VAL GLU PHE VAL ARG LYS THR SEQRES 25 A 548 GLY ILE SER ARG ASN GLU ALA GLN ILE GLU MET ASP LEU SEQRES 26 A 548 PHE GLU GLU VAL VAL ARG ASP ASP LEU ASN PRO ILE ALA SEQRES 27 A 548 PRO ARG VAL LEU GLY VAL VAL ASP PRO LEU LYS VAL VAL SEQRES 28 A 548 LEU THR ASN TYR GLU GLY GLU GLU TRP ILE GLU ALA PRO SEQRES 29 A 548 TYR TRP PRO ARG ASP ILE PRO LYS GLU GLY THR ARG PRO SEQRES 30 A 548 LEU PRO PHE SER PRO GLU LEU TYR ILE GLU ARG THR ASP SEQRES 31 A 548 PHE SER LEU ASN PRO PRO LYS GLY TRP LYS ARG LEU ALA SEQRES 32 A 548 PRO GLY GLN ARG VAL ARG LEU ARG HIS ALA TYR VAL ILE SEQRES 33 A 548 GLU LEU GLU ASP VAL VAL GLU GLU GLY GLY GLU VAL ARG SEQRES 34 A 548 LEU LEU LYS ALA ARG ILE VAL PRO GLY THR LEU GLY ALA SEQRES 35 A 548 ASN PRO GLU ASP GLY VAL ARG PRO LYS GLY VAL ILE HIS SEQRES 36 A 548 TRP VAL SER ALA ARG HIS ALA LEU PRO VAL GLU PHE ARG SEQRES 37 A 548 LEU TYR GLY ARG LEU PHE ARG THR LYS ASP PRO GLU GLU SEQRES 38 A 548 GLY GLY ASP PHE LEU GLN ASN LEU ASN PRO GLU ALA LEU SEQRES 39 A 548 VAL VAL LYS ARG GLY PHE ILE GLU PRO SER VAL ALA GLN SEQRES 40 A 548 ASP PRO GLU ASP THR ARG TYR GLN LEU GLU ARG LEU GLY SEQRES 41 A 548 TYR PHE TRP ARG ASP PRO VAL ASP SER ARG PRO GLU ALA SEQRES 42 A 548 LEU VAL MET ASN ARG ILE VAL PRO LEU LYS GLU GLY TYR SEQRES 43 A 548 ARG VAL HET ATP A 601 31 HET CS A 602 1 HET CS A 603 1 HET MG A 604 1 HET MG A 605 1 HET CL A 606 1 HET CL A 607 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM CS CESIUM ION HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 CS 2(CS 1+) FORMUL 5 MG 2(MG 2+) FORMUL 7 CL 2(CL 1-) FORMUL 9 HOH *82(H2 O) HELIX 1 AA1 CYS A 7 GLU A 19 1 13 HELIX 2 AA2 HIS A 38 TYR A 55 1 18 HELIX 3 AA3 LYS A 72 LEU A 86 1 15 HELIX 4 AA4 TYR A 99 GLU A 113 1 15 HELIX 5 AA5 PRO A 122 GLY A 133 1 12 HELIX 6 AA6 SER A 142 ARG A 155 1 14 HELIX 7 AA7 ASN A 175 ARG A 179 5 5 HELIX 8 AA8 MET A 203 GLU A 215 1 13 HELIX 9 AA9 GLU A 225 ASN A 228 5 4 HELIX 10 AB1 ASN A 229 LYS A 241 1 13 HELIX 11 AB2 SER A 268 GLY A 278 1 11 HELIX 12 AB3 THR A 291 GLY A 299 1 9 HELIX 13 AB4 ARG A 301 GLY A 313 1 13 HELIX 14 AB5 GLU A 322 ASN A 335 1 14 HELIX 15 AB6 THR A 389 PHE A 391 5 3 HELIX 16 AB7 PRO A 503 ASP A 508 5 6 SHEET 1 AA1 3 VAL A 26 PHE A 29 0 SHEET 2 AA1 3 GLU A 58 PHE A 63 1 O ASN A 60 N PHE A 29 SHEET 3 AA1 3 ARG A 92 TYR A 95 1 O LEU A 94 N LEU A 61 SHEET 1 AA2 4 ALA A 116 ASP A 119 0 SHEET 2 AA2 4 VAL A 164 ALA A 167 -1 O VAL A 164 N ASP A 119 SHEET 3 AA2 4 VAL A 182 ILE A 186 -1 O LEU A 183 N LEU A 165 SHEET 4 AA2 4 ILE A 200 PRO A 202 -1 O TYR A 201 N ARG A 185 SHEET 1 AA3 2 HIS A 219 THR A 223 0 SHEET 2 AA3 2 HIS A 253 PHE A 257 1 O TYR A 255 N CYS A 222 SHEET 1 AA4 7 ARG A 340 VAL A 341 0 SHEET 2 AA4 7 ARG A 513 LEU A 516 1 O GLN A 515 N VAL A 341 SHEET 3 AA4 7 GLY A 520 ARG A 524 -1 O PHE A 522 N TYR A 514 SHEET 4 AA4 7 LEU A 534 VAL A 540 -1 O VAL A 540 N TYR A 521 SHEET 5 AA4 7 LEU A 463 TYR A 470 1 N ARG A 468 O ARG A 538 SHEET 6 AA4 7 LEU A 494 ILE A 501 -1 O GLY A 499 N VAL A 465 SHEET 7 AA4 7 GLY A 343 VAL A 344 -1 N VAL A 344 O PHE A 500 SHEET 1 AA5 7 VAL A 453 ILE A 454 0 SHEET 2 AA5 7 VAL A 408 LEU A 410 1 N ARG A 409 O ILE A 454 SHEET 3 AA5 7 VAL A 415 GLU A 423 -1 O ILE A 416 N VAL A 408 SHEET 4 AA5 7 VAL A 428 ILE A 435 -1 O LYS A 432 N GLU A 419 SHEET 5 AA5 7 PRO A 347 LEU A 352 1 N VAL A 351 O ALA A 433 SHEET 6 AA5 7 GLU A 383 GLU A 387 -1 O ILE A 386 N LEU A 348 SHEET 7 AA5 7 VAL A 457 SER A 458 -1 O VAL A 457 N TYR A 385 SHEET 1 AA6 2 GLU A 359 PRO A 364 0 SHEET 2 AA6 2 THR A 375 PHE A 380 -1 O LEU A 378 N ILE A 361 LINK O PRO A 367 CS CS A 602 1555 1555 3.10 LINK O ILE A 370 CS CS A 602 1555 1555 2.91 LINK O LYS A 372 CS CS A 602 1555 1555 3.21 LINK O1B ATP A 601 CS CS A 603 1555 1555 3.01 LINK O2B ATP A 601 MG MG A 604 1555 1555 2.37 LINK O2A ATP A 601 MG MG A 604 1555 1555 2.25 LINK O1G ATP A 601 MG MG A 605 1555 1555 2.84 CISPEP 1 SER A 249 PRO A 250 0 -2.44 SITE 1 AC1 11 PRO A 31 GLU A 32 GLY A 40 HIS A 41 SITE 2 AC1 11 THR A 223 ARG A 259 LEU A 260 LEU A 267 SITE 3 AC1 11 CS A 603 MG A 604 MG A 605 SITE 1 AC2 5 TRP A 366 PRO A 367 ILE A 370 LYS A 372 SITE 2 AC2 5 GLU A 373 SITE 1 AC3 1 ATP A 601 SITE 1 AC4 1 ATP A 601 SITE 1 AC5 2 GLU A 32 ATP A 601 SITE 1 AC6 2 ARG A 411 HIS A 412 SITE 1 AC7 3 THR A 375 ARG A 376 PRO A 377 CRYST1 144.660 39.413 116.051 90.00 116.48 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006913 0.000000 0.003444 0.00000 SCALE2 0.000000 0.025372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009627 0.00000