HEADER TRANSFERASE/INHIBITOR 26-FEB-18 5ZE6 TITLE CRYSTAL STRUCTURE OF OCTAPRENYL PYROPHOSPHATE SYNTHASE FROM TITLE 2 ESCHERICHIA COLI WITH BPH-981 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OCTAPRENYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ALL-TRANS-OCTAPRENYL-DIPHOSPHATE SYNTHASE,OCTAPRENYL COMPND 5 PYROPHOSPHATE SYNTHASE,OPP SYNTHASE; COMPND 6 EC: 2.5.1.90; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: ISPB, CEL, YHBD, B3187, JW3154; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET46EK/LIC KEYWDS PRENYLTRANSFERASE, SITE-DIRECTED MUTAGENESIS, PRODUCT CHAIN LENGTH, KEYWDS 2 TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.HAN,W.D.LIU,Y.Y.ZHENG,T.P.KO,C.C.CHEN,R.T.GUO REVDAT 3 22-NOV-23 5ZE6 1 REMARK REVDAT 2 25-SEP-19 5ZE6 1 JRNL REVDAT 1 27-FEB-19 5ZE6 0 JRNL AUTH S.R.MALWAL,L.CHEN,H.HICKS,F.QU,W.LIU,A.SHILLO,W.X.LAW, JRNL AUTH 2 J.ZHANG,N.CHANDNANI,X.HAN,Y.ZHENG,C.C.CHEN,R.T.GUO, JRNL AUTH 3 A.ABDELKHALEK,M.N.SELEEM,E.OLDFIELD JRNL TITL DISCOVERY OF LIPOPHILIC BISPHOSPHONATES THAT TARGET JRNL TITL 2 BACTERIAL CELL WALL AND QUINONE BIOSYNTHESIS. JRNL REF J.MED.CHEM. V. 62 2564 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 30730737 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01878 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 47239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2427 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3338 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 178 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9411 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 417 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 1.30000 REMARK 3 B33 (A**2) : -1.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.535 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.307 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.239 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.964 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9608 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 8980 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13016 ; 1.490 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 20790 ; 0.910 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1222 ; 5.756 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 451 ;41.367 ;25.299 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1629 ;22.361 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;23.383 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1506 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10804 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1792 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4921 ; 3.708 ; 3.965 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4920 ; 3.707 ; 3.964 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6132 ; 5.464 ; 5.926 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 6133 ; 5.464 ; 5.927 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4687 ; 4.438 ; 4.451 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4684 ; 4.436 ; 4.446 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6885 ; 6.611 ; 6.490 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 41442 ; 9.593 ;75.000 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 41294 ; 9.596 ;74.998 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZE6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006653. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49730 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3WJK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1M TRIS-HCL, 24%(W/V) POLYETHYLENE GLYCOL 3350, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.01600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.91100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.99950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.91100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.01600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.99950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 221 REMARK 465 GLN A 222 REMARK 465 LEU A 223 REMARK 465 GLY A 224 REMARK 465 LYS A 225 REMARK 465 ARG A 321 REMARK 465 ASP A 322 REMARK 465 ARG A 323 REMARK 465 ASN B 217 REMARK 465 ALA B 218 REMARK 465 ASP B 219 REMARK 465 GLY B 220 REMARK 465 GLU B 221 REMARK 465 GLN B 222 REMARK 465 LEU B 223 REMARK 465 GLY B 224 REMARK 465 ASP B 322 REMARK 465 ARG B 323 REMARK 465 ASP C 91 REMARK 465 MET C 92 REMARK 465 ARG C 93 REMARK 465 ARG C 94 REMARK 465 GLY C 95 REMARK 465 LYS C 96 REMARK 465 ALA C 97 REMARK 465 THR C 98 REMARK 465 ALA C 99 REMARK 465 ASN C 100 REMARK 465 ALA C 101 REMARK 465 ALA C 102 REMARK 465 GLU C 161 REMARK 465 ASN C 162 REMARK 465 TYR C 163 REMARK 465 ALA C 218 REMARK 465 ASP C 219 REMARK 465 GLY C 220 REMARK 465 GLU C 221 REMARK 465 GLN C 222 REMARK 465 LEU C 223 REMARK 465 GLY C 224 REMARK 465 LYS C 225 REMARK 465 ASN C 226 REMARK 465 ASP C 322 REMARK 465 ARG C 323 REMARK 465 ARG D 94 REMARK 465 GLY D 95 REMARK 465 LYS D 96 REMARK 465 ALA D 97 REMARK 465 THR D 98 REMARK 465 ALA D 99 REMARK 465 ALA D 218 REMARK 465 ASP D 219 REMARK 465 GLY D 220 REMARK 465 GLU D 221 REMARK 465 GLN D 222 REMARK 465 LEU D 223 REMARK 465 GLY D 224 REMARK 465 LYS D 225 REMARK 465 ASP D 322 REMARK 465 ARG D 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 64 34.19 -141.36 REMARK 500 LYS A 170 -67.47 -127.85 REMARK 500 ASN A 263 113.00 -161.35 REMARK 500 LYS B 170 -72.24 -133.09 REMARK 500 ARG C 46 58.24 29.14 REMARK 500 ASP C 88 -166.64 -109.33 REMARK 500 GLU C 89 105.85 -57.82 REMARK 500 ILE C 158 62.32 -103.67 REMARK 500 THR C 159 -158.24 -89.37 REMARK 500 THR C 171 -55.49 -135.18 REMARK 500 ASN C 263 101.85 -161.68 REMARK 500 HIS C 266 0.50 81.19 REMARK 500 GLN C 320 56.30 -116.37 REMARK 500 LEU D 25 34.32 -96.82 REMARK 500 MET D 92 -158.42 -114.41 REMARK 500 ASP D 157 33.16 -95.12 REMARK 500 THR D 171 -62.44 -125.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 603 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH C 492 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH D 521 DISTANCE = 6.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 84 OD1 REMARK 620 2 ASP B 88 OD1 105.5 REMARK 620 3 ASP B 88 OD2 75.9 47.5 REMARK 620 4 HOH B 502 O 68.6 101.8 56.6 REMARK 620 5 HOH B 504 O 150.1 77.5 85.9 81.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 84 OD2 REMARK 620 2 ASP B 88 OD2 79.5 REMARK 620 3 HOH B 502 O 68.1 57.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HJX A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HJX B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 403 DBREF 5ZE6 A 1 323 UNP P0AD57 ISPB_ECOLI 1 323 DBREF 5ZE6 B 1 323 UNP P0AD57 ISPB_ECOLI 1 323 DBREF 5ZE6 C 1 323 UNP P0AD57 ISPB_ECOLI 1 323 DBREF 5ZE6 D 1 323 UNP P0AD57 ISPB_ECOLI 1 323 SEQRES 1 A 323 MET ASN LEU GLU LYS ILE ASN GLU LEU THR ALA GLN ASP SEQRES 2 A 323 MET ALA GLY VAL ASN ALA ALA ILE LEU GLU GLN LEU ASN SEQRES 3 A 323 SER ASP VAL GLN LEU ILE ASN GLN LEU GLY TYR TYR ILE SEQRES 4 A 323 VAL SER GLY GLY GLY LYS ARG ILE ARG PRO MET ILE ALA SEQRES 5 A 323 VAL LEU ALA ALA ARG ALA VAL GLY TYR GLU GLY ASN ALA SEQRES 6 A 323 HIS VAL THR ILE ALA ALA LEU ILE GLU PHE ILE HIS THR SEQRES 7 A 323 ALA THR LEU LEU HIS ASP ASP VAL VAL ASP GLU SER ASP SEQRES 8 A 323 MET ARG ARG GLY LYS ALA THR ALA ASN ALA ALA PHE GLY SEQRES 9 A 323 ASN ALA ALA SER VAL LEU VAL GLY ASP PHE ILE TYR THR SEQRES 10 A 323 ARG ALA PHE GLN MET MET THR SER LEU GLY SER LEU LYS SEQRES 11 A 323 VAL LEU GLU VAL MET SER GLU ALA VAL ASN VAL ILE ALA SEQRES 12 A 323 GLU GLY GLU VAL LEU GLN LEU MET ASN VAL ASN ASP PRO SEQRES 13 A 323 ASP ILE THR GLU GLU ASN TYR MET ARG VAL ILE TYR SER SEQRES 14 A 323 LYS THR ALA ARG LEU PHE GLU ALA ALA ALA GLN CYS SER SEQRES 15 A 323 GLY ILE LEU ALA GLY CYS THR PRO GLU GLU GLU LYS GLY SEQRES 16 A 323 LEU GLN ASP TYR GLY ARG TYR LEU GLY THR ALA PHE GLN SEQRES 17 A 323 LEU ILE ASP ASP LEU LEU ASP TYR ASN ALA ASP GLY GLU SEQRES 18 A 323 GLN LEU GLY LYS ASN VAL GLY ASP ASP LEU ASN GLU GLY SEQRES 19 A 323 LYS PRO THR LEU PRO LEU LEU HIS ALA MET HIS HIS GLY SEQRES 20 A 323 THR PRO GLU GLN ALA GLN MET ILE ARG THR ALA ILE GLU SEQRES 21 A 323 GLN GLY ASN GLY ARG HIS LEU LEU GLU PRO VAL LEU GLU SEQRES 22 A 323 ALA MET ASN ALA CYS GLY SER LEU GLU TRP THR ARG GLN SEQRES 23 A 323 ARG ALA GLU GLU GLU ALA ASP LYS ALA ILE ALA ALA LEU SEQRES 24 A 323 GLN VAL LEU PRO ASP THR PRO TRP ARG GLU ALA LEU ILE SEQRES 25 A 323 GLY LEU ALA HIS ILE ALA VAL GLN ARG ASP ARG SEQRES 1 B 323 MET ASN LEU GLU LYS ILE ASN GLU LEU THR ALA GLN ASP SEQRES 2 B 323 MET ALA GLY VAL ASN ALA ALA ILE LEU GLU GLN LEU ASN SEQRES 3 B 323 SER ASP VAL GLN LEU ILE ASN GLN LEU GLY TYR TYR ILE SEQRES 4 B 323 VAL SER GLY GLY GLY LYS ARG ILE ARG PRO MET ILE ALA SEQRES 5 B 323 VAL LEU ALA ALA ARG ALA VAL GLY TYR GLU GLY ASN ALA SEQRES 6 B 323 HIS VAL THR ILE ALA ALA LEU ILE GLU PHE ILE HIS THR SEQRES 7 B 323 ALA THR LEU LEU HIS ASP ASP VAL VAL ASP GLU SER ASP SEQRES 8 B 323 MET ARG ARG GLY LYS ALA THR ALA ASN ALA ALA PHE GLY SEQRES 9 B 323 ASN ALA ALA SER VAL LEU VAL GLY ASP PHE ILE TYR THR SEQRES 10 B 323 ARG ALA PHE GLN MET MET THR SER LEU GLY SER LEU LYS SEQRES 11 B 323 VAL LEU GLU VAL MET SER GLU ALA VAL ASN VAL ILE ALA SEQRES 12 B 323 GLU GLY GLU VAL LEU GLN LEU MET ASN VAL ASN ASP PRO SEQRES 13 B 323 ASP ILE THR GLU GLU ASN TYR MET ARG VAL ILE TYR SER SEQRES 14 B 323 LYS THR ALA ARG LEU PHE GLU ALA ALA ALA GLN CYS SER SEQRES 15 B 323 GLY ILE LEU ALA GLY CYS THR PRO GLU GLU GLU LYS GLY SEQRES 16 B 323 LEU GLN ASP TYR GLY ARG TYR LEU GLY THR ALA PHE GLN SEQRES 17 B 323 LEU ILE ASP ASP LEU LEU ASP TYR ASN ALA ASP GLY GLU SEQRES 18 B 323 GLN LEU GLY LYS ASN VAL GLY ASP ASP LEU ASN GLU GLY SEQRES 19 B 323 LYS PRO THR LEU PRO LEU LEU HIS ALA MET HIS HIS GLY SEQRES 20 B 323 THR PRO GLU GLN ALA GLN MET ILE ARG THR ALA ILE GLU SEQRES 21 B 323 GLN GLY ASN GLY ARG HIS LEU LEU GLU PRO VAL LEU GLU SEQRES 22 B 323 ALA MET ASN ALA CYS GLY SER LEU GLU TRP THR ARG GLN SEQRES 23 B 323 ARG ALA GLU GLU GLU ALA ASP LYS ALA ILE ALA ALA LEU SEQRES 24 B 323 GLN VAL LEU PRO ASP THR PRO TRP ARG GLU ALA LEU ILE SEQRES 25 B 323 GLY LEU ALA HIS ILE ALA VAL GLN ARG ASP ARG SEQRES 1 C 323 MET ASN LEU GLU LYS ILE ASN GLU LEU THR ALA GLN ASP SEQRES 2 C 323 MET ALA GLY VAL ASN ALA ALA ILE LEU GLU GLN LEU ASN SEQRES 3 C 323 SER ASP VAL GLN LEU ILE ASN GLN LEU GLY TYR TYR ILE SEQRES 4 C 323 VAL SER GLY GLY GLY LYS ARG ILE ARG PRO MET ILE ALA SEQRES 5 C 323 VAL LEU ALA ALA ARG ALA VAL GLY TYR GLU GLY ASN ALA SEQRES 6 C 323 HIS VAL THR ILE ALA ALA LEU ILE GLU PHE ILE HIS THR SEQRES 7 C 323 ALA THR LEU LEU HIS ASP ASP VAL VAL ASP GLU SER ASP SEQRES 8 C 323 MET ARG ARG GLY LYS ALA THR ALA ASN ALA ALA PHE GLY SEQRES 9 C 323 ASN ALA ALA SER VAL LEU VAL GLY ASP PHE ILE TYR THR SEQRES 10 C 323 ARG ALA PHE GLN MET MET THR SER LEU GLY SER LEU LYS SEQRES 11 C 323 VAL LEU GLU VAL MET SER GLU ALA VAL ASN VAL ILE ALA SEQRES 12 C 323 GLU GLY GLU VAL LEU GLN LEU MET ASN VAL ASN ASP PRO SEQRES 13 C 323 ASP ILE THR GLU GLU ASN TYR MET ARG VAL ILE TYR SER SEQRES 14 C 323 LYS THR ALA ARG LEU PHE GLU ALA ALA ALA GLN CYS SER SEQRES 15 C 323 GLY ILE LEU ALA GLY CYS THR PRO GLU GLU GLU LYS GLY SEQRES 16 C 323 LEU GLN ASP TYR GLY ARG TYR LEU GLY THR ALA PHE GLN SEQRES 17 C 323 LEU ILE ASP ASP LEU LEU ASP TYR ASN ALA ASP GLY GLU SEQRES 18 C 323 GLN LEU GLY LYS ASN VAL GLY ASP ASP LEU ASN GLU GLY SEQRES 19 C 323 LYS PRO THR LEU PRO LEU LEU HIS ALA MET HIS HIS GLY SEQRES 20 C 323 THR PRO GLU GLN ALA GLN MET ILE ARG THR ALA ILE GLU SEQRES 21 C 323 GLN GLY ASN GLY ARG HIS LEU LEU GLU PRO VAL LEU GLU SEQRES 22 C 323 ALA MET ASN ALA CYS GLY SER LEU GLU TRP THR ARG GLN SEQRES 23 C 323 ARG ALA GLU GLU GLU ALA ASP LYS ALA ILE ALA ALA LEU SEQRES 24 C 323 GLN VAL LEU PRO ASP THR PRO TRP ARG GLU ALA LEU ILE SEQRES 25 C 323 GLY LEU ALA HIS ILE ALA VAL GLN ARG ASP ARG SEQRES 1 D 323 MET ASN LEU GLU LYS ILE ASN GLU LEU THR ALA GLN ASP SEQRES 2 D 323 MET ALA GLY VAL ASN ALA ALA ILE LEU GLU GLN LEU ASN SEQRES 3 D 323 SER ASP VAL GLN LEU ILE ASN GLN LEU GLY TYR TYR ILE SEQRES 4 D 323 VAL SER GLY GLY GLY LYS ARG ILE ARG PRO MET ILE ALA SEQRES 5 D 323 VAL LEU ALA ALA ARG ALA VAL GLY TYR GLU GLY ASN ALA SEQRES 6 D 323 HIS VAL THR ILE ALA ALA LEU ILE GLU PHE ILE HIS THR SEQRES 7 D 323 ALA THR LEU LEU HIS ASP ASP VAL VAL ASP GLU SER ASP SEQRES 8 D 323 MET ARG ARG GLY LYS ALA THR ALA ASN ALA ALA PHE GLY SEQRES 9 D 323 ASN ALA ALA SER VAL LEU VAL GLY ASP PHE ILE TYR THR SEQRES 10 D 323 ARG ALA PHE GLN MET MET THR SER LEU GLY SER LEU LYS SEQRES 11 D 323 VAL LEU GLU VAL MET SER GLU ALA VAL ASN VAL ILE ALA SEQRES 12 D 323 GLU GLY GLU VAL LEU GLN LEU MET ASN VAL ASN ASP PRO SEQRES 13 D 323 ASP ILE THR GLU GLU ASN TYR MET ARG VAL ILE TYR SER SEQRES 14 D 323 LYS THR ALA ARG LEU PHE GLU ALA ALA ALA GLN CYS SER SEQRES 15 D 323 GLY ILE LEU ALA GLY CYS THR PRO GLU GLU GLU LYS GLY SEQRES 16 D 323 LEU GLN ASP TYR GLY ARG TYR LEU GLY THR ALA PHE GLN SEQRES 17 D 323 LEU ILE ASP ASP LEU LEU ASP TYR ASN ALA ASP GLY GLU SEQRES 18 D 323 GLN LEU GLY LYS ASN VAL GLY ASP ASP LEU ASN GLU GLY SEQRES 19 D 323 LYS PRO THR LEU PRO LEU LEU HIS ALA MET HIS HIS GLY SEQRES 20 D 323 THR PRO GLU GLN ALA GLN MET ILE ARG THR ALA ILE GLU SEQRES 21 D 323 GLN GLY ASN GLY ARG HIS LEU LEU GLU PRO VAL LEU GLU SEQRES 22 D 323 ALA MET ASN ALA CYS GLY SER LEU GLU TRP THR ARG GLN SEQRES 23 D 323 ARG ALA GLU GLU GLU ALA ASP LYS ALA ILE ALA ALA LEU SEQRES 24 D 323 GLN VAL LEU PRO ASP THR PRO TRP ARG GLU ALA LEU ILE SEQRES 25 D 323 GLY LEU ALA HIS ILE ALA VAL GLN ARG ASP ARG HET HJX A 401 25 HET HJX B 401 25 HET MG B 402 1 HET MG B 403 1 HETNAM HJX 2-HYDROXY-6-(TETRADECYLOXY)BENZOIC ACID HETNAM MG MAGNESIUM ION HETSYN HJX BPH-981 FORMUL 5 HJX 2(C21 H34 O4) FORMUL 7 MG 2(MG 2+) FORMUL 9 HOH *417(H2 O) HELIX 1 AA1 ASN A 2 LEU A 25 1 24 HELIX 2 AA2 VAL A 29 SER A 41 1 13 HELIX 3 AA3 ARG A 46 VAL A 59 1 14 HELIX 4 AA4 ASN A 64 ASP A 88 1 25 HELIX 5 AA5 THR A 98 GLY A 104 1 7 HELIX 6 AA6 GLY A 104 SER A 125 1 22 HELIX 7 AA7 SER A 128 ASN A 152 1 25 HELIX 8 AA8 THR A 159 LYS A 170 1 12 HELIX 9 AA9 ALA A 172 ALA A 186 1 15 HELIX 10 AB1 THR A 189 ASP A 215 1 27 HELIX 11 AB2 GLY A 228 GLU A 233 1 6 HELIX 12 AB3 THR A 237 GLY A 247 1 11 HELIX 13 AB4 THR A 248 GLY A 262 1 15 HELIX 14 AB5 LEU A 267 GLY A 279 1 13 HELIX 15 AB6 GLY A 279 LEU A 299 1 21 HELIX 16 AB7 GLN A 300 LEU A 302 5 3 HELIX 17 AB8 THR A 305 VAL A 319 1 15 HELIX 18 AB9 ASN B 2 LEU B 25 1 24 HELIX 19 AC1 VAL B 29 SER B 41 1 13 HELIX 20 AC2 ARG B 46 VAL B 59 1 14 HELIX 21 AC3 ASN B 64 GLU B 89 1 26 HELIX 22 AC4 THR B 98 GLY B 104 1 7 HELIX 23 AC5 GLY B 104 SER B 125 1 22 HELIX 24 AC6 SER B 128 ASN B 152 1 25 HELIX 25 AC7 THR B 159 LYS B 170 1 12 HELIX 26 AC8 ALA B 172 ALA B 186 1 15 HELIX 27 AC9 THR B 189 ASP B 212 1 24 HELIX 28 AD1 ASN B 226 GLY B 234 1 9 HELIX 29 AD2 THR B 237 GLY B 247 1 11 HELIX 30 AD3 THR B 248 GLY B 262 1 15 HELIX 31 AD4 GLY B 264 HIS B 266 5 3 HELIX 32 AD5 LEU B 267 GLY B 279 1 13 HELIX 33 AD6 GLY B 279 LEU B 299 1 21 HELIX 34 AD7 GLN B 300 LEU B 302 5 3 HELIX 35 AD8 THR B 305 VAL B 319 1 15 HELIX 36 AD9 ASN C 2 THR C 10 1 9 HELIX 37 AE1 THR C 10 LEU C 25 1 16 HELIX 38 AE2 VAL C 29 SER C 41 1 13 HELIX 39 AE3 ARG C 46 ALA C 58 1 13 HELIX 40 AE4 ALA C 65 ASP C 85 1 21 HELIX 41 AE5 GLY C 104 LEU C 126 1 23 HELIX 42 AE6 SER C 128 ASP C 155 1 28 HELIX 43 AE7 ARG C 165 THR C 171 1 7 HELIX 44 AE8 THR C 171 ALA C 186 1 16 HELIX 45 AE9 THR C 189 ASP C 215 1 27 HELIX 46 AF1 GLY C 228 GLU C 233 1 6 HELIX 47 AF2 THR C 237 GLY C 247 1 11 HELIX 48 AF3 THR C 248 GLY C 262 1 15 HELIX 49 AF4 LEU C 267 GLY C 279 1 13 HELIX 50 AF5 GLY C 279 LEU C 299 1 21 HELIX 51 AF6 GLN C 300 LEU C 302 5 3 HELIX 52 AF7 THR C 305 VAL C 319 1 15 HELIX 53 AF8 ASN D 2 LEU D 25 1 24 HELIX 54 AF9 VAL D 29 SER D 41 1 13 HELIX 55 AG1 ARG D 46 VAL D 59 1 14 HELIX 56 AG2 ASN D 64 ASP D 85 1 22 HELIX 57 AG3 ASP D 88 MET D 92 5 5 HELIX 58 AG4 ALA D 101 LEU D 126 1 26 HELIX 59 AG5 SER D 128 VAL D 153 1 26 HELIX 60 AG6 THR D 159 THR D 171 1 13 HELIX 61 AG7 THR D 171 ALA D 186 1 16 HELIX 62 AG8 THR D 189 ASP D 215 1 27 HELIX 63 AG9 GLY D 228 GLU D 233 1 6 HELIX 64 AH1 THR D 237 GLY D 247 1 11 HELIX 65 AH2 THR D 248 GLY D 262 1 15 HELIX 66 AH3 GLY D 264 HIS D 266 5 3 HELIX 67 AH4 LEU D 267 GLY D 279 1 13 HELIX 68 AH5 GLY D 279 LEU D 299 1 21 HELIX 69 AH6 GLN D 300 LEU D 302 5 3 HELIX 70 AH7 THR D 305 VAL D 319 1 15 SHEET 1 AA1 2 MET A 92 ARG A 93 0 SHEET 2 AA1 2 LYS A 96 ALA A 97 -1 O LYS A 96 N ARG A 93 SHEET 1 AA2 2 MET B 92 ARG B 93 0 SHEET 2 AA2 2 LYS B 96 ALA B 97 -1 O LYS B 96 N ARG B 93 LINK OD1 ASP B 84 MG MG B 402 1555 1555 2.30 LINK OD2 ASP B 84 MG MG B 403 1555 1555 2.12 LINK OD1 ASP B 88 MG MG B 402 1555 1555 2.89 LINK OD2 ASP B 88 MG MG B 402 1555 1555 2.45 LINK OD2 ASP B 88 MG MG B 403 1555 1555 2.47 LINK MG MG B 402 O HOH B 502 1555 1555 2.54 LINK MG MG B 402 O HOH B 504 1555 1555 2.31 LINK MG MG B 403 O HOH B 502 1555 1555 2.44 SITE 1 AC1 10 HIS A 77 THR A 80 LEU A 81 ASP A 84 SITE 2 AC1 10 ARG A 93 ASP A 113 GLU A 146 HOH A 529 SITE 3 AC1 10 ASP C 113 TYR C 116 SITE 1 AC2 8 THR B 80 LEU B 81 ASP B 84 ASP B 113 SITE 2 AC2 8 GLU B 146 HOH B 502 ASP D 113 TYR D 116 SITE 1 AC3 5 ASP B 84 ASP B 88 GLU B 146 HOH B 502 SITE 2 AC3 5 HOH B 504 SITE 1 AC4 3 ASP B 84 ASP B 88 HOH B 502 CRYST1 94.032 111.999 133.822 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010635 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007473 0.00000