HEADER HYDROLASE/INHIBITOR 27-FEB-18 5ZEQ TITLE CARBOXYPEPTIDASE B IN COMPLEX WITH DD28 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOXYPEPTIDASE B; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.17.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: CPB1, CPB; SOURCE 6 EXPRESSION_SYSTEM: SUS SCROFA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9823 KEYWDS SELENIUM, ORGANOSELENIUM, SELENOL, CPB INHIBITOR, SELECTIVITY, KEYWDS 2 HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.ITOH,N.YOSHIMOTO,K.YAMAMOTO REVDAT 2 04-JUL-18 5ZEQ 1 JRNL REVDAT 1 20-JUN-18 5ZEQ 0 JRNL AUTH T.ITOH,N.YOSHIMOTO,Y.HIRANO,K.YAMAMOTO JRNL TITL STRUCTURAL BASIS FOR THE SELECTIVE INHIBITION OF ACTIVATED JRNL TITL 2 THROMBIN-ACTIVATABLE FIBRINOLYSIS INHIBITOR (TAFIA) BY A JRNL TITL 3 SELENIUM-CONTAINING INHIBITOR WITH CHLORO-AMINOPYRIDINE AS A JRNL TITL 4 BASIC GROUP JRNL REF BIOORG. MED. CHEM. LETT. V. 28 2256 2018 JRNL REFN ESSN 1464-3405 JRNL PMID 29859906 JRNL DOI 10.1016/J.BMCL.2018.05.042 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 24130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1298 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1733 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.1820 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.2190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2436 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 345 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60000 REMARK 3 B22 (A**2) : 0.60000 REMARK 3 B33 (A**2) : -1.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2551 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2308 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3479 ; 1.896 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5320 ; 3.718 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 310 ; 6.203 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;33.202 ;24.068 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 403 ;12.227 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.342 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 368 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2898 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 615 ; 0.023 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5ZEQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300006931. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.1.1 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48008 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 100.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.33500 REMARK 200 R SYM FOR SHELL (I) : 0.33500 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC 5.8.0103 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CACODYLATE (PH 5.3-6.8), REMARK 280 100MM ZINC ACETATE, 5-15% PEG 8000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 296K, PH 6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.02000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.43000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.01000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.43000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.03000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.43000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.43000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.01000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.43000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.43000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.03000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 50.02000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 187 C SER A 187A N 0.229 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 35 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP A 209 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 29 53.09 -142.37 REMARK 500 THR A 129 -175.72 -66.99 REMARK 500 SER A 199 2.06 138.84 REMARK 500 GLN A 200 68.80 63.63 REMARK 500 ASN A 215 34.05 -92.87 REMARK 500 ASP A 273 -148.42 -109.05 REMARK 500 ILE A 280 47.17 -86.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 845 DISTANCE = 6.69 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 ND1 REMARK 620 2 GLU A 72 OE1 118.2 REMARK 620 3 GLU A 72 OE2 91.0 59.1 REMARK 620 4 HIS A 196 ND1 101.6 96.5 155.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 85 OE2 REMARK 620 2 GLU A 291 OE1 90.6 REMARK 620 3 GLU A 291 OE2 93.7 59.4 REMARK 620 4 ASP A 159 OD2 49.9 49.1 51.4 REMARK 620 5 ASP A 162 OD1 51.2 48.0 50.4 1.3 REMARK 620 6 HOH A 524 O 88.9 153.0 93.7 113.8 114.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 197 O REMARK 620 2 GLU A 270 OE1 80.2 REMARK 620 3 GLU A 270 OE2 130.3 51.6 REMARK 620 4 CAC A 407 O1 85.4 127.9 112.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 409 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 255 OD1 REMARK 620 2 ASP A 255 OD2 62.8 REMARK 620 3 9B3 A 406 N2 89.2 111.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9B3 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 409 DBREF 5ZEQ A 6 308 UNP P09955 CBPB1_PIG 113 416 SEQRES 1 A 304 GLY HIS SER TYR GLU LYS TYR ASN ASN TRP GLU THR ILE SEQRES 2 A 304 GLU ALA TRP THR LYS GLN VAL THR SER GLU ASN PRO ASP SEQRES 3 A 304 LEU ILE SER ARG THR ALA ILE GLY THR THR PHE LEU GLY SEQRES 4 A 304 ASN ASN ILE TYR LEU LEU LYS VAL GLY LYS PRO GLY PRO SEQRES 5 A 304 ASN LYS PRO ALA ILE PHE MET ASP CYS GLY PHE HIS ALA SEQRES 6 A 304 ARG GLU TRP ILE SER HIS ALA PHE CYS GLN TRP PHE VAL SEQRES 7 A 304 ARG GLU ALA VAL LEU THR TYR GLY TYR GLU SER HIS MET SEQRES 8 A 304 THR GLU PHE LEU ASN LYS LEU ASP PHE TYR VAL LEU PRO SEQRES 9 A 304 VAL LEU ASN ILE ASP GLY TYR ILE TYR THR TRP THR LYS SEQRES 10 A 304 ASN ARG MET TRP ARG LYS THR ARG SER THR ASN ALA GLY SEQRES 11 A 304 THR THR CYS ILE GLY THR ASP PRO ASN ARG ASN PHE ASP SEQRES 12 A 304 ALA GLY TRP CYS THR THR GLY ALA SER THR ASP PRO CYS SEQRES 13 A 304 ASP GLU THR TYR CYS GLY SER ALA ALA GLU SER GLU LYS SEQRES 14 A 304 GLU THR LYS ALA LEU ALA ASP PHE ILE ARG ASN ASN LEU SEQRES 15 A 304 SER SER ILE LYS ALA TYR LEU THR ILE HIS SER TYR SER SEQRES 16 A 304 GLN MET ILE LEU TYR PRO TYR SER TYR ASP TYR LYS LEU SEQRES 17 A 304 PRO GLU ASN ASN ALA GLU LEU ASN ASN LEU ALA LYS ALA SEQRES 18 A 304 ALA VAL LYS GLU LEU ALA THR LEU TYR GLY THR LYS TYR SEQRES 19 A 304 THR TYR GLY PRO GLY ALA THR THR ILE TYR PRO ALA ALA SEQRES 20 A 304 GLY GLY SER ASP ASP TRP ALA TYR ASP GLN GLY ILE LYS SEQRES 21 A 304 TYR SER PHE THR PHE GLU LEU ARG ASP LYS GLY ARG TYR SEQRES 22 A 304 GLY PHE ILE LEU PRO GLU SER GLN ILE GLN ALA THR CYS SEQRES 23 A 304 GLU GLU THR MET LEU ALA ILE LYS TYR VAL THR ASN TYR SEQRES 24 A 304 VAL LEU GLY HIS LEU HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN A 405 1 HET 9B3 A 406 15 HET CAC A 407 5 HET ZN A 408 1 HET ZN A 409 1 HETNAM ZN ZINC ION HETNAM 9B3 (2~{S})-2-[(6-AZANYL-5-CHLORANYL-PYRIDIN-3-YL)METHYL]- HETNAM 2 9B3 3-SELANYL-PROPANOIC ACID HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 2 ZN 7(ZN 2+) FORMUL 7 9B3 C9 H11 CL N2 O2 SE FORMUL 8 CAC C2 H6 AS O2 1- FORMUL 11 HOH *345(H2 O) HELIX 1 AA1 ASN A 14 ASN A 29 1 16 HELIX 2 AA2 GLU A 72 TYR A 90 1 19 HELIX 3 AA3 GLU A 93 LEU A 103 1 11 HELIX 4 AA4 ASN A 112 LYS A 122 1 11 HELIX 5 AA5 ASP A 142 ASN A 146 5 5 HELIX 6 AA6 GLU A 173 ASN A 186 1 14 HELIX 7 AA7 ASN A 215 GLY A 235 1 21 HELIX 8 AA8 GLY A 243 ILE A 247 1 5 HELIX 9 AA9 GLY A 253 GLN A 261 1 9 HELIX 10 AB1 PRO A 282 SER A 284 5 3 HELIX 11 AB2 GLN A 285 HIS A 307 1 23 SHEET 1 AA1 8 ILE A 33 THR A 40 0 SHEET 2 AA1 8 ASN A 46 VAL A 52 -1 O LYS A 51 N SER A 34 SHEET 3 AA1 8 ASP A 104 LEU A 108 -1 O PHE A 105 N VAL A 52 SHEET 4 AA1 8 ALA A 61 ASP A 65 1 N MET A 64 O TYR A 106 SHEET 5 AA1 8 ILE A 189 HIS A 196 1 O LYS A 190 N ALA A 61 SHEET 6 AA1 8 TYR A 265 GLU A 270 1 O PHE A 269 N HIS A 196 SHEET 7 AA1 8 MET A 201 TYR A 204 -1 N LEU A 203 O THR A 268 SHEET 8 AA1 8 THR A 239 PRO A 242 1 O THR A 239 N ILE A 202 SSBOND 1 CYS A 66 CYS A 79 1555 1555 2.02 SSBOND 2 CYS A 138 CYS A 161 1555 1555 2.03 SSBOND 3 CYS A 152 CYS A 166 1555 1555 2.05 LINK ND1 HIS A 69 ZN ZN A 404 1555 1555 2.13 LINK OE1 GLU A 72 ZN ZN A 404 1555 1555 2.10 LINK OE2 GLU A 72 ZN ZN A 404 1555 1555 2.23 LINK OE2 GLU A 85 ZN ZN A 401 1555 1555 2.13 LINK NE2 HIS A 95 ZN ZN A 403 1555 1555 2.50 LINK ND1 HIS A 196 ZN ZN A 404 1555 1555 1.97 LINK O SER A 197 ZN ZN A 405 1555 1555 2.18 LINK OG SER A 207 ZN ZN A 408 1555 1555 2.57 LINK OD1 ASP A 255 ZN ZN A 409 1555 1555 2.27 LINK OD2 ASP A 255 ZN ZN A 409 1555 1555 1.88 LINK OE1 GLU A 270 ZN ZN A 405 1555 1555 2.57 LINK OE2 GLU A 270 ZN ZN A 405 1555 1555 2.27 LINK OE1 GLU A 291 ZN ZN A 401 1555 1555 1.99 LINK OE2 GLU A 291 ZN ZN A 401 1555 1555 2.34 LINK NE2 HIS A 307 ZN ZN A 402 1555 1555 2.18 LINK ZN ZN A 405 O1 CAC A 407 1555 1555 2.17 LINK N2 9B3 A 406 ZN ZN A 409 1555 1555 2.04 LINK OD2 ASP A 159 ZN ZN A 401 1555 3545 2.03 LINK OD1 ASP A 162 ZN ZN A 401 1555 3545 2.14 LINK ZN ZN A 401 O HOH A 524 1555 4554 2.06 CISPEP 1 SER A 197 TYR A 198 0 -4.15 CISPEP 2 PRO A 205 TYR A 206 0 -0.55 CISPEP 3 ARG A 272 ASP A 273 0 -0.53 SITE 1 AC1 5 GLU A 85 ASP A 159 ASP A 162 GLU A 291 SITE 2 AC1 5 HOH A 524 SITE 1 AC2 1 HIS A 307 SITE 1 AC3 1 HIS A 95 SITE 1 AC4 4 HIS A 69 GLU A 72 HIS A 196 9B3 A 406 SITE 1 AC5 6 GLU A 72 SER A 197 TYR A 198 GLU A 270 SITE 2 AC5 6 9B3 A 406 CAC A 407 SITE 1 AC6 19 HIS A 69 GLU A 72 ARG A 127 ASN A 144 SITE 2 AC6 19 ARG A 145 HIS A 196 SER A 207 TYR A 248 SITE 3 AC6 19 ALA A 250 GLY A 253 ASP A 255 ASP A 256 SITE 4 AC6 19 THR A 268 GLU A 270 ZN A 404 ZN A 405 SITE 5 AC6 19 ZN A 408 ZN A 409 HOH A 644 SITE 1 AC7 8 SER A 197 TYR A 198 ILE A 247 TYR A 248 SITE 2 AC7 8 GLU A 270 PHE A 279 ZN A 405 HOH A 694 SITE 1 AC8 5 SER A 207 ASP A 255 ASP A 256 9B3 A 406 SITE 2 AC8 5 ZN A 409 SITE 1 AC9 5 SER A 207 ASP A 255 ASP A 256 9B3 A 406 SITE 2 AC9 5 ZN A 408 CRYST1 78.860 78.860 100.040 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012681 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009996 0.00000