HEADER TRANSFERASE 27-FEB-18 5ZER TITLE UDP GLUCOSE ALPHA TETRAHYDROBIOPTERIN GLYCOSYLTRANSFERASE FROM TITLE 2 SYNECHOCOCCUS SPECIES PCC 7942 - BH2 COMPLEX FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLUCOSE:TETRAHYDROBIOPTERIN GLUCOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-355; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS PCC 7942; SOURCE 3 ORGANISM_COMMON: ANACYSTIS NIDULANS R2; SOURCE 4 ORGANISM_TAXID: 1140; SOURCE 5 STRAIN: PCC 7942; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TETRAHYDROBIOPTERIN, PTERIDINE GLYCOSYLTRANSFERASE, PTERIDINE KEYWDS 2 GLYCOSIDES, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KILLIVALAVAN,K.H.LEE REVDAT 2 22-NOV-23 5ZER 1 REMARK REVDAT 1 06-MAR-19 5ZER 0 JRNL AUTH A.KILLIVALAVAN,K.H.LEE JRNL TITL UDP GLUCOSE ALPHA TETRAHYDROBIOPTERIN GLYCOSYLTRANSFERASE JRNL TITL 2 FROM SYNECHOCOCCUS SPECIES PCC 7942 - BH2 COMPLEX FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 26482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1396 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1913 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 159 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.588 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.318 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.315 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.890 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5502 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5087 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7511 ; 1.551 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11760 ; 1.037 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 696 ; 7.098 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;35.021 ;23.547 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 797 ;16.104 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;15.836 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 831 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6199 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1139 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2796 ; 3.470 ; 5.092 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2795 ; 3.468 ; 5.091 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3488 ; 5.719 ; 7.617 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3489 ; 5.718 ; 7.619 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2706 ; 2.918 ; 5.335 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2706 ; 2.917 ; 5.336 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4024 ; 4.943 ; 7.893 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6247 ; 9.241 ;60.700 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6247 ; 9.241 ;60.700 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZER COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300006911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26482 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5ZE7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS, PEG3350, GALACTOSE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 83.56500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 83.56500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 232 REMARK 465 GLN B 233 REMARK 465 PHE B 234 REMARK 465 GLY B 235 REMARK 465 ASP B 236 REMARK 465 VAL B 267 REMARK 465 GLU B 268 REMARK 465 ALA B 269 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 180 O HOH A 501 2.13 REMARK 500 O HOH B 533 O HOH B 556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 37 10.81 -63.66 REMARK 500 LEU A 131 -36.49 -134.63 REMARK 500 PRO A 187 65.77 -68.79 REMARK 500 PHE A 234 -107.12 -118.76 REMARK 500 PHE A 244 -144.64 -77.04 REMARK 500 SER A 246 -135.25 41.23 REMARK 500 THR A 247 -45.28 -144.38 REMARK 500 GLU A 268 -85.20 -141.73 REMARK 500 ASN A 272 -49.57 60.73 REMARK 500 ILE A 295 -60.42 -91.91 REMARK 500 SER A 354 -137.71 -96.71 REMARK 500 SER B 10 -179.90 -68.27 REMARK 500 ASP B 54 -10.39 66.33 REMARK 500 HIS B 153 -63.57 -91.11 REMARK 500 GLU B 184 105.86 -44.75 REMARK 500 GLU B 186 133.50 65.56 REMARK 500 LEU B 189 119.33 75.23 REMARK 500 GLU B 198 81.55 -154.33 REMARK 500 GLN B 206 -38.32 136.24 REMARK 500 LEU B 215 88.99 77.83 REMARK 500 ASP B 225 -169.68 -110.64 REMARK 500 TYR B 226 -122.68 -177.58 REMARK 500 TRP B 227 -123.77 115.26 REMARK 500 LEU B 230 100.03 68.97 REMARK 500 PHE B 244 -83.55 -85.86 REMARK 500 VAL B 245 151.94 67.22 REMARK 500 THR B 263 40.61 -144.92 REMARK 500 ASN B 272 46.06 -90.54 REMARK 500 ALA B 274 -55.54 -27.21 REMARK 500 ARG B 289 124.52 -170.60 REMARK 500 LYS B 300 -58.80 -135.91 REMARK 500 ALA B 311 -48.52 -172.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 201 GLU B 202 31.14 REMARK 500 TYR B 226 TRP B 227 137.19 REMARK 500 TRP B 227 GLN B 228 -146.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HBI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HBI B 401 DBREF 5ZER A 2 355 UNP Q93EY3 Q93EY3_SYNE7 2 355 DBREF 5ZER B 2 355 UNP Q93EY3 Q93EY3_SYNE7 2 355 SEQRES 1 A 354 THR ALA HIS ARG PHE LEU PHE VAL SER THR PRO VAL GLY SEQRES 2 A 354 PRO LEU GLY SER GLY ARG GLY GLY GLY VAL GLU LEU THR SEQRES 3 A 354 LEU PRO ASN LEU ALA LYS ALA LEU THR GLN ARG GLY HIS SEQRES 4 A 354 GLN VAL SER VAL LEU ALA PRO ALA GLY SER VAL LEU PRO SEQRES 5 A 354 ASP LEU PRO LEU GLU THR VAL PRO GLY THR TRP GLN SER SEQRES 6 A 354 THR ALA GLN SER HIS GLY ARG ALA THR PRO ALA GLU ILE SEQRES 7 A 354 PRO ALA GLU SER VAL LEU ALA ARG LEU TRP ASP ARG ALA SEQRES 8 A 354 HIS GLN GLN GLN ALA ASP PHE ASP LEU ILE LEU ASN PHE SEQRES 9 A 354 ALA TYR ASP TRP LEU PRO LEU TYR LEU THR PRO PHE PHE SEQRES 10 A 354 LYS THR PRO VAL ALA HIS LEU ILE SER MSE GLY SER LEU SEQRES 11 A 354 SER GLU VAL MSE ASP GLN ALA ILE ALA THR SER LEU ASP SEQRES 12 A 354 ARG TYR PRO GLY SER ILE ALA VAL HIS SER LEU ALA GLN SEQRES 13 A 354 ALA ALA THR PHE PRO PHE GLY ASP ARG CYS LEU CYS ILE SEQRES 14 A 354 GLY ASN ALA LEU ASP LEU ALA ALA TYR GLY PHE ASN PRO SEQRES 15 A 354 GLU PRO GLU PRO VAL LEU GLY TRP VAL GLY ARG ILE ALA SEQRES 16 A 354 PRO GLU LYS GLY LEU GLU ASP ALA ILE GLN ALA ALA GLN SEQRES 17 A 354 GLN ALA GLY LEU PRO LEU ARG VAL TRP GLY ALA LEU THR SEQRES 18 A 354 GLU PRO ASP TYR TRP GLN ARG LEU GLN GLN GLN PHE GLY SEQRES 19 A 354 ASP ARG ALA VAL SER TYR GLN GLY PHE VAL SER THR ASP SEQRES 20 A 354 GLU LEU GLN ARG GLY LEU GLY ARG CYS GLN GLY LEU LEU SEQRES 21 A 354 MSE THR PRO LYS TRP VAL GLU ALA PHE GLY ASN VAL ALA SEQRES 22 A 354 ILE GLU ALA LEU ALA CYS GLY LEU PRO VAL ILE ALA TYR SEQRES 23 A 354 ALA ARG GLY GLY PRO LEU GLU ILE ILE GLU GLN GLY LYS SEQRES 24 A 354 SER GLY TRP LEU VAL GLU PRO ASP GLN GLN ALA ALA LEU SEQRES 25 A 354 VAL ASN ALA ILE GLY GLN LEU SER SER LEU ASP ARG ALA SEQRES 26 A 354 TYR CYS ARG ALA GLN ALA GLU ALA ARG PHE SER LEU ALA SEQRES 27 A 354 ALA MSE GLY GLN ARG LEU GLU ALA TRP LEU LEU PRO LEU SEQRES 28 A 354 LEU SER ARG SEQRES 1 B 354 THR ALA HIS ARG PHE LEU PHE VAL SER THR PRO VAL GLY SEQRES 2 B 354 PRO LEU GLY SER GLY ARG GLY GLY GLY VAL GLU LEU THR SEQRES 3 B 354 LEU PRO ASN LEU ALA LYS ALA LEU THR GLN ARG GLY HIS SEQRES 4 B 354 GLN VAL SER VAL LEU ALA PRO ALA GLY SER VAL LEU PRO SEQRES 5 B 354 ASP LEU PRO LEU GLU THR VAL PRO GLY THR TRP GLN SER SEQRES 6 B 354 THR ALA GLN SER HIS GLY ARG ALA THR PRO ALA GLU ILE SEQRES 7 B 354 PRO ALA GLU SER VAL LEU ALA ARG LEU TRP ASP ARG ALA SEQRES 8 B 354 HIS GLN GLN GLN ALA ASP PHE ASP LEU ILE LEU ASN PHE SEQRES 9 B 354 ALA TYR ASP TRP LEU PRO LEU TYR LEU THR PRO PHE PHE SEQRES 10 B 354 LYS THR PRO VAL ALA HIS LEU ILE SER MSE GLY SER LEU SEQRES 11 B 354 SER GLU VAL MSE ASP GLN ALA ILE ALA THR SER LEU ASP SEQRES 12 B 354 ARG TYR PRO GLY SER ILE ALA VAL HIS SER LEU ALA GLN SEQRES 13 B 354 ALA ALA THR PHE PRO PHE GLY ASP ARG CYS LEU CYS ILE SEQRES 14 B 354 GLY ASN ALA LEU ASP LEU ALA ALA TYR GLY PHE ASN PRO SEQRES 15 B 354 GLU PRO GLU PRO VAL LEU GLY TRP VAL GLY ARG ILE ALA SEQRES 16 B 354 PRO GLU LYS GLY LEU GLU ASP ALA ILE GLN ALA ALA GLN SEQRES 17 B 354 GLN ALA GLY LEU PRO LEU ARG VAL TRP GLY ALA LEU THR SEQRES 18 B 354 GLU PRO ASP TYR TRP GLN ARG LEU GLN GLN GLN PHE GLY SEQRES 19 B 354 ASP ARG ALA VAL SER TYR GLN GLY PHE VAL SER THR ASP SEQRES 20 B 354 GLU LEU GLN ARG GLY LEU GLY ARG CYS GLN GLY LEU LEU SEQRES 21 B 354 MSE THR PRO LYS TRP VAL GLU ALA PHE GLY ASN VAL ALA SEQRES 22 B 354 ILE GLU ALA LEU ALA CYS GLY LEU PRO VAL ILE ALA TYR SEQRES 23 B 354 ALA ARG GLY GLY PRO LEU GLU ILE ILE GLU GLN GLY LYS SEQRES 24 B 354 SER GLY TRP LEU VAL GLU PRO ASP GLN GLN ALA ALA LEU SEQRES 25 B 354 VAL ASN ALA ILE GLY GLN LEU SER SER LEU ASP ARG ALA SEQRES 26 B 354 TYR CYS ARG ALA GLN ALA GLU ALA ARG PHE SER LEU ALA SEQRES 27 B 354 ALA MSE GLY GLN ARG LEU GLU ALA TRP LEU LEU PRO LEU SEQRES 28 B 354 LEU SER ARG MODRES 5ZER MSE A 128 MET MODIFIED RESIDUE MODRES 5ZER MSE A 135 MET MODIFIED RESIDUE MODRES 5ZER MSE A 262 MET MODIFIED RESIDUE MODRES 5ZER MSE A 341 MET MODIFIED RESIDUE MODRES 5ZER MSE B 128 MET MODIFIED RESIDUE MODRES 5ZER MSE B 135 MET MODIFIED RESIDUE MODRES 5ZER MSE B 262 MET MODIFIED RESIDUE MODRES 5ZER MSE B 341 MET MODIFIED RESIDUE HET MSE A 128 8 HET MSE A 135 8 HET MSE A 262 8 HET MSE A 341 8 HET MSE B 128 8 HET MSE B 135 8 HET MSE B 262 8 HET MSE B 341 8 HET HBI A 401 17 HET GOL A 402 6 HET HBI B 401 17 HETNAM MSE SELENOMETHIONINE HETNAM HBI 7,8-DIHYDROBIOPTERIN HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 HBI 2(C9 H13 N5 O3) FORMUL 4 GOL C3 H8 O3 FORMUL 6 HOH *159(H2 O) HELIX 1 AA1 GLY A 23 GLN A 37 1 15 HELIX 2 AA2 THR A 67 HIS A 71 5 5 HELIX 3 AA3 SER A 83 GLN A 95 1 13 HELIX 4 AA4 GLN A 96 PHE A 99 5 4 HELIX 5 AA5 ASP A 108 LEU A 114 1 7 HELIX 6 AA6 THR A 115 PHE A 118 5 4 HELIX 7 AA7 SER A 132 TYR A 146 1 15 HELIX 8 AA8 SER A 154 ALA A 159 1 6 HELIX 9 AA9 PHE A 163 CYS A 167 5 5 HELIX 10 AB1 ASP A 175 TYR A 179 5 5 HELIX 11 AB2 GLY A 200 GLY A 212 1 13 HELIX 12 AB3 GLU A 223 PHE A 234 1 12 HELIX 13 AB4 THR A 247 ARG A 256 1 10 HELIX 14 AB5 ASN A 272 CYS A 280 1 9 HELIX 15 AB6 GLY A 291 ILE A 296 1 6 HELIX 16 AB7 GLN A 309 GLY A 318 1 10 HELIX 17 AB8 GLN A 319 LEU A 323 5 5 HELIX 18 AB9 ASP A 324 PHE A 336 1 13 HELIX 19 AC1 SER A 337 LEU A 353 1 17 HELIX 20 AC2 GLY B 23 GLN B 37 1 15 HELIX 21 AC3 THR B 67 HIS B 71 5 5 HELIX 22 AC4 SER B 83 GLN B 95 1 13 HELIX 23 AC5 GLN B 96 PHE B 99 5 4 HELIX 24 AC6 ASP B 108 LEU B 114 1 7 HELIX 25 AC7 THR B 115 PHE B 118 5 4 HELIX 26 AC8 SER B 132 TYR B 146 1 15 HELIX 27 AC9 SER B 154 ALA B 159 1 6 HELIX 28 AD1 PHE B 163 CYS B 167 5 5 HELIX 29 AD2 ASP B 175 TYR B 179 5 5 HELIX 30 AD3 ALA B 207 GLY B 212 5 6 HELIX 31 AD4 SER B 246 ARG B 256 1 11 HELIX 32 AD5 VAL B 273 CYS B 280 1 8 HELIX 33 AD6 GLY B 291 ILE B 296 1 6 HELIX 34 AD7 ALA B 311 GLY B 318 1 8 HELIX 35 AD8 GLN B 319 LEU B 323 5 5 HELIX 36 AD9 ASP B 324 SER B 337 1 14 HELIX 37 AE1 SER B 337 LEU B 350 1 14 HELIX 38 AE2 PRO B 351 SER B 354 5 4 SHEET 1 AA1 7 LEU A 57 VAL A 60 0 SHEET 2 AA1 7 GLN A 41 PRO A 47 1 N VAL A 44 O GLU A 58 SHEET 3 AA1 7 ARG A 5 VAL A 9 1 N PHE A 8 O SER A 43 SHEET 4 AA1 7 LEU A 101 ASN A 104 1 O LEU A 103 N LEU A 7 SHEET 5 AA1 7 VAL A 122 LEU A 125 1 O ALA A 123 N ASN A 104 SHEET 6 AA1 7 ILE A 150 VAL A 152 1 O ALA A 151 N HIS A 124 SHEET 7 AA1 7 LEU A 168 CYS A 169 1 O LEU A 168 N VAL A 152 SHEET 1 AA2 6 VAL A 239 TYR A 241 0 SHEET 2 AA2 6 LEU A 215 TRP A 218 1 N VAL A 217 O SER A 240 SHEET 3 AA2 6 LEU A 189 VAL A 192 1 N LEU A 189 O ARG A 216 SHEET 4 AA2 6 GLY A 259 MSE A 262 1 O GLY A 259 N GLY A 190 SHEET 5 AA2 6 VAL A 284 TYR A 287 1 O ILE A 285 N MSE A 262 SHEET 6 AA2 6 GLY A 302 VAL A 305 1 O VAL A 305 N ALA A 286 SHEET 1 AA3 7 LEU B 57 VAL B 60 0 SHEET 2 AA3 7 GLN B 41 PRO B 47 1 N ALA B 46 O GLU B 58 SHEET 3 AA3 7 ARG B 5 VAL B 9 1 N PHE B 8 O SER B 43 SHEET 4 AA3 7 LEU B 101 ASN B 104 1 O LEU B 103 N VAL B 9 SHEET 5 AA3 7 VAL B 122 LEU B 125 1 O LEU B 125 N ASN B 104 SHEET 6 AA3 7 ILE B 150 VAL B 152 1 O ALA B 151 N HIS B 124 SHEET 7 AA3 7 LEU B 168 CYS B 169 1 O LEU B 168 N ILE B 150 SHEET 1 AA4 2 GLY B 190 VAL B 192 0 SHEET 2 AA4 2 ARG B 216 TRP B 218 1 O TRP B 218 N TRP B 191 SHEET 1 AA5 3 LEU B 260 LEU B 261 0 SHEET 2 AA5 3 VAL B 284 TYR B 287 1 O ILE B 285 N LEU B 260 SHEET 3 AA5 3 GLY B 302 VAL B 305 1 O TRP B 303 N ALA B 286 LINK C SER A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N GLY A 129 1555 1555 1.33 LINK C VAL A 134 N MSE A 135 1555 1555 1.33 LINK C MSE A 135 N ASP A 136 1555 1555 1.33 LINK C LEU A 261 N MSE A 262 1555 1555 1.33 LINK C MSE A 262 N THR A 263 1555 1555 1.33 LINK C ALA A 340 N MSE A 341 1555 1555 1.33 LINK C MSE A 341 N GLY A 342 1555 1555 1.33 LINK C SER B 127 N MSE B 128 1555 1555 1.33 LINK C MSE B 128 N GLY B 129 1555 1555 1.33 LINK C VAL B 134 N MSE B 135 1555 1555 1.33 LINK C MSE B 135 N ASP B 136 1555 1555 1.34 LINK C LEU B 261 N MSE B 262 1555 1555 1.33 LINK C MSE B 262 N THR B 263 1555 1555 1.33 LINK C ALA B 340 N MSE B 341 1555 1555 1.34 LINK C MSE B 341 N GLY B 342 1555 1555 1.33 CISPEP 1 PHE A 270 GLY A 271 0 -7.22 CISPEP 2 GLU B 202 ASP B 203 0 12.46 CISPEP 3 PHE B 270 GLY B 271 0 2.44 SITE 1 AC1 17 THR A 11 VAL A 13 GLY A 21 GLY A 22 SITE 2 AC1 17 GLY A 23 VAL A 24 SER A 66 THR A 67 SITE 3 AC1 17 ALA A 68 ALA A 106 TYR A 107 ASP A 108 SITE 4 AC1 17 SER A 127 MSE A 128 GOL A 402 HOH A 503 SITE 5 AC1 17 HOH A 580 SITE 1 AC2 8 GLN A 65 ALA A 68 ALA A 77 TYR A 107 SITE 2 AC2 8 ASP A 108 SER A 132 HBI A 401 HOH A 538 SITE 1 AC3 12 THR B 11 VAL B 13 GLY B 23 VAL B 24 SITE 2 AC3 12 SER B 66 ALA B 68 GLN B 69 ALA B 106 SITE 3 AC3 12 TYR B 107 ASP B 108 SER B 127 HOH B 516 CRYST1 167.130 80.000 53.380 90.00 91.27 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005983 0.000000 0.000133 0.00000 SCALE2 0.000000 0.012500 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018738 0.00000