HEADER STRUCTURAL PROTEIN 28-FEB-18 5ZEW TITLE A UBIQUITIN-LIKE PROTEIN FROM THE HYPERTHERMOPHILIC ARCHAEA TITLE 2 CALDIARCHAEUM SUBTERRANEUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-77; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDATUS CALDIARCHAEUM SUBTERRANEUM; SOURCE 3 ORGANISM_TAXID: 311458; SOURCE 4 GENE: CSUB_C1474, HGMM_F04B03C03, HGMM_F21D07C21, HGMM_F30C12C33; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITIN-LIKE PROTEIN, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.MI,K.Q.YE REVDAT 2 01-MAY-24 5ZEW 1 REMARK REVDAT 1 27-FEB-19 5ZEW 0 JRNL AUTH J.MI,K.Q.YE,J.NI,J.H.ZHANG,S.H.LIAO,X.M.TU JRNL TITL THE HYDROPHOBIC EFFECT AND ELECTROSTATIC INTERACTIONS JRNL TITL 2 CONTRIBUTE TO THE THERMOSTABILITY OF THE UBIQUITIN-LIKE JRNL TITL 3 PROTEIN FROM THE HYPERTHERMOPHILIC ARCHAEA CALDIARCHAEUM JRNL TITL 4 SUBTERRANEUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 14 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZEW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300006572. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 UBIQUITIN-LIKE PROTEIN, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D C(CO)NH; 3D 1H-15N REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, SPARKY, NMRDRAW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 5 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 53 -48.99 -154.51 REMARK 500 1 ASP A 54 39.13 -83.52 REMARK 500 1 GLU A 56 -54.09 63.36 REMARK 500 2 ALA A 8 35.86 -77.19 REMARK 500 2 LYS A 37 12.97 57.79 REMARK 500 2 GLU A 56 -23.45 61.42 REMARK 500 3 ALA A 8 35.70 -77.29 REMARK 500 3 LYS A 37 17.43 58.59 REMARK 500 3 GLU A 56 -64.79 58.09 REMARK 500 4 ALA A 8 36.49 -76.46 REMARK 500 4 GLU A 56 -56.10 62.67 REMARK 500 4 THR A 75 -51.11 -129.61 REMARK 500 5 ALA A 8 23.29 -77.62 REMARK 500 5 LYS A 53 -51.05 -158.07 REMARK 500 5 ASP A 54 40.25 -84.53 REMARK 500 5 GLU A 56 -61.92 62.00 REMARK 500 6 ALA A 8 41.47 -76.70 REMARK 500 6 GLU A 56 -43.85 61.04 REMARK 500 7 ALA A 8 37.23 -78.10 REMARK 500 7 GLU A 56 -46.52 59.49 REMARK 500 8 ALA A 8 40.65 -76.18 REMARK 500 8 GLU A 56 -54.15 63.60 REMARK 500 9 ALA A 8 29.95 -76.23 REMARK 500 9 ASN A 22 33.35 -82.95 REMARK 500 9 GLU A 56 -52.85 61.63 REMARK 500 10 ALA A 8 35.17 -78.05 REMARK 500 10 GLU A 56 -56.01 60.53 REMARK 500 11 ALA A 8 34.38 -75.34 REMARK 500 11 LYS A 53 -48.83 -161.08 REMARK 500 11 GLU A 56 -63.43 64.50 REMARK 500 11 THR A 75 50.06 -101.28 REMARK 500 12 ALA A 8 41.10 -74.83 REMARK 500 12 GLU A 56 -56.00 63.65 REMARK 500 13 ALA A 8 39.22 -75.96 REMARK 500 13 GLU A 56 -40.15 63.79 REMARK 500 14 ALA A 8 28.76 -77.32 REMARK 500 14 GLU A 56 -56.09 61.64 REMARK 500 14 THR A 75 -34.81 -134.07 REMARK 500 15 ALA A 8 41.53 -75.00 REMARK 500 15 ASN A 22 37.57 -80.51 REMARK 500 15 GLU A 56 -70.84 59.40 REMARK 500 15 VAL A 76 -39.26 -136.36 REMARK 500 16 ALA A 8 31.91 -75.25 REMARK 500 16 GLU A 56 -53.26 62.34 REMARK 500 17 ALA A 8 48.36 -77.17 REMARK 500 17 GLU A 56 -36.59 62.24 REMARK 500 18 ALA A 8 40.31 -74.98 REMARK 500 18 GLU A 56 -46.70 64.04 REMARK 500 18 THR A 75 -53.55 -140.49 REMARK 500 19 ALA A 8 41.07 -75.44 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36169 RELATED DB: BMRB REMARK 900 A UBIQUITIN-LIKE PROTEIN FROM THE HYPERTHERMOPHILIC ARCHAEA REMARK 900 CALDIARCHAEUM SUBTERRANEUM DBREF 5ZEW A 1 77 UNP E6N8B8 E6N8B8_9ARCH 1 77 SEQRES 1 A 77 MET LYS ILE LYS ILE VAL PRO ALA VAL GLY GLY GLY SER SEQRES 2 A 77 PRO LEU GLU LEU GLU VAL ALA PRO ASN ALA THR VAL GLY SEQRES 3 A 77 ALA VAL ARG THR LYS VAL CYS ALA MET LYS LYS LEU PRO SEQRES 4 A 77 PRO ASP THR THR ARG LEU THR TYR LYS GLY ARG ALA LEU SEQRES 5 A 77 LYS ASP THR GLU THR LEU GLU SER LEU GLY VAL ALA ASP SEQRES 6 A 77 GLY ASP LYS PHE VAL LEU ILE THR ARG THR VAL GLY HELIX 1 AA1 THR A 24 LYS A 37 1 14 SHEET 1 AA1 4 LEU A 15 GLU A 18 0 SHEET 2 AA1 4 LYS A 2 PRO A 7 -1 N ILE A 3 O LEU A 17 SHEET 3 AA1 4 ASP A 67 THR A 73 1 O ASP A 67 N LYS A 4 SHEET 4 AA1 4 THR A 43 TYR A 47 -1 N ARG A 44 O ILE A 72 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1