HEADER TRANSPORT PROTEIN 07-MAR-18 5ZG1 TITLE CRYSTAL STRUCTURE OF THE GLUA2O LBD IN COMPLEX WITH GLUTAMATE AND TITLE 2 COMPOUND-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 413-527,UNP RESIDUES 653-796; COMPND 5 SYNONYM: GLUR-2,AMPA-SELECTIVE GLUTAMATE RECEPTOR 2,GLUR-B,GLUR-K2, COMPND 6 GLUTAMATE RECEPTOR IONOTROPIC,AMPA 2,GLUA2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GLUR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMPA RECEPTOR LIGAND-BINDING DOMAIN, ALLOSTERIC MODULATION COMPLEX, KEYWDS 2 MEMBRANE PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SOGABE,S.IGAKI,A.HIROKAWA,Y.ZAMA,W.LANE,G.SNELL REVDAT 3 22-NOV-23 5ZG1 1 REMARK REVDAT 2 27-MAR-19 5ZG1 1 JRNL REVDAT 1 16-JAN-19 5ZG1 0 JRNL AUTH A.KUNUGI,M.TANAKA,A.SUZUKI,Y.TAJIMA,N.SUZUKI,M.SUZUKI, JRNL AUTH 2 S.NAKAMURA,H.KUNO,A.YOKOTA,S.SOGABE,Y.KOSUGI,Y.AWASAKI, JRNL AUTH 3 T.KAKU,H.KIMURA JRNL TITL TAK-137, AN AMPA-R POTENTIATOR WITH LITTLE AGONISTIC EFFECT, JRNL TITL 2 HAS A WIDE THERAPEUTIC WINDOW. JRNL REF NEUROPSYCHOPHARMACOLOGY V. 44 961 2019 JRNL REFN ISSN 1740-634X JRNL PMID 30209408 JRNL DOI 10.1038/S41386-018-0213-7 REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 116541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6148 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6408 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 322 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4050 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 562 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.051 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.473 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4339 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5848 ; 1.467 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 544 ; 6.018 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;31.553 ;24.152 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 830 ;12.475 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.131 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 644 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3145 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2098 ; 1.460 ; 1.478 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2623 ; 2.367 ; 2.214 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2241 ; 2.621 ; 1.747 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6841 ; 5.614 ;21.443 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 414 A 794 REMARK 3 RESIDUE RANGE : A 901 A 901 REMARK 3 RESIDUE RANGE : B 414 B 794 REMARK 3 RESIDUE RANGE : B 901 B 901 REMARK 3 RESIDUE RANGE : A 1001 A 1001 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4439 0.0765 22.5738 REMARK 3 T TENSOR REMARK 3 T11: 0.0007 T22: 0.0159 REMARK 3 T33: 0.0045 T12: -0.0002 REMARK 3 T13: 0.0007 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.2681 L22: 0.4440 REMARK 3 L33: 0.1233 L12: 0.0030 REMARK 3 L13: 0.0003 L23: 0.0331 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: 0.0005 S13: -0.0002 REMARK 3 S21: 0.0014 S22: 0.0034 S23: 0.0071 REMARK 3 S31: 0.0007 S32: -0.0028 S33: -0.0144 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZG1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300007009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976486 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 122835 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.320 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41500 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1FTJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.1M SODIUM ACETATE, REMARK 280 0.1M ZINC ACETATE, PH 4.9, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.31150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 411 REMARK 465 SER A 412 REMARK 465 ASN A 413 REMARK 465 GLY A 795 REMARK 465 SER A 796 REMARK 465 GLY B 411 REMARK 465 SER B 412 REMARK 465 ASN B 413 REMARK 465 GLY B 795 REMARK 465 SER B 796 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 681 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 681 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 681 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 681 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 713 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 713 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 793 33.20 -143.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLU A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9C0 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLU B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 907 DBREF 5ZG1 A 413 526 UNP P42262 GRIA2_HUMAN 413 526 DBREF 5ZG1 A 653 796 UNP P42262 GRIA2_HUMAN 653 796 DBREF 5ZG1 B 413 526 UNP P42262 GRIA2_HUMAN 413 526 DBREF 5ZG1 B 653 796 UNP P42262 GRIA2_HUMAN 653 796 SEQADV 5ZG1 GLY A 411 UNP P42262 EXPRESSION TAG SEQADV 5ZG1 SER A 412 UNP P42262 EXPRESSION TAG SEQADV 5ZG1 LYS A 527 UNP P42262 LINKER SEQADV 5ZG1 GLY A 641 UNP P42262 LINKER SEQADV 5ZG1 THR A 642 UNP P42262 LINKER SEQADV 5ZG1 GLY B 411 UNP P42262 EXPRESSION TAG SEQADV 5ZG1 SER B 412 UNP P42262 EXPRESSION TAG SEQADV 5ZG1 LYS B 527 UNP P42262 LINKER SEQADV 5ZG1 GLY B 641 UNP P42262 LINKER SEQADV 5ZG1 THR B 642 UNP P42262 LINKER SEQRES 1 A 263 GLY SER ASN LYS THR VAL VAL VAL THR THR ILE LEU GLU SEQRES 2 A 263 SER PRO TYR VAL MET MET LYS LYS ASN HIS GLU MET LEU SEQRES 3 A 263 GLU GLY ASN GLU ARG TYR GLU GLY TYR CYS VAL ASP LEU SEQRES 4 A 263 ALA ALA GLU ILE ALA LYS HIS CYS GLY PHE LYS TYR LYS SEQRES 5 A 263 LEU THR ILE VAL GLY ASP GLY LYS TYR GLY ALA ARG ASP SEQRES 6 A 263 ALA ASP THR LYS ILE TRP ASN GLY MET VAL GLY GLU LEU SEQRES 7 A 263 VAL TYR GLY LYS ALA ASP ILE ALA ILE ALA PRO LEU THR SEQRES 8 A 263 ILE THR LEU VAL ARG GLU GLU VAL ILE ASP PHE SER LYS SEQRES 9 A 263 PRO PHE MET SER LEU GLY ILE SER ILE MET ILE LYS LYS SEQRES 10 A 263 GLY THR PRO ILE GLU SER ALA GLU ASP LEU SER LYS GLN SEQRES 11 A 263 THR GLU ILE ALA TYR GLY THR LEU ASP SER GLY SER THR SEQRES 12 A 263 LYS GLU PHE PHE ARG ARG SER LYS ILE ALA VAL PHE ASP SEQRES 13 A 263 LYS MET TRP THR TYR MET ARG SER ALA GLU PRO SER VAL SEQRES 14 A 263 PHE VAL ARG THR THR ALA GLU GLY VAL ALA ARG VAL ARG SEQRES 15 A 263 LYS SER LYS GLY LYS TYR ALA TYR LEU LEU GLU SER THR SEQRES 16 A 263 MET ASN GLU TYR ILE GLU GLN ARG LYS PRO CYS ASP THR SEQRES 17 A 263 MET LYS VAL GLY GLY ASN LEU ASP SER LYS GLY TYR GLY SEQRES 18 A 263 ILE ALA THR PRO LYS GLY SER SER LEU ARG ASN ALA VAL SEQRES 19 A 263 ASN LEU ALA VAL LEU LYS LEU ASN GLU GLN GLY LEU LEU SEQRES 20 A 263 ASP LYS LEU LYS ASN LYS TRP TRP TYR ASP LYS GLY GLU SEQRES 21 A 263 CYS GLY SER SEQRES 1 B 263 GLY SER ASN LYS THR VAL VAL VAL THR THR ILE LEU GLU SEQRES 2 B 263 SER PRO TYR VAL MET MET LYS LYS ASN HIS GLU MET LEU SEQRES 3 B 263 GLU GLY ASN GLU ARG TYR GLU GLY TYR CYS VAL ASP LEU SEQRES 4 B 263 ALA ALA GLU ILE ALA LYS HIS CYS GLY PHE LYS TYR LYS SEQRES 5 B 263 LEU THR ILE VAL GLY ASP GLY LYS TYR GLY ALA ARG ASP SEQRES 6 B 263 ALA ASP THR LYS ILE TRP ASN GLY MET VAL GLY GLU LEU SEQRES 7 B 263 VAL TYR GLY LYS ALA ASP ILE ALA ILE ALA PRO LEU THR SEQRES 8 B 263 ILE THR LEU VAL ARG GLU GLU VAL ILE ASP PHE SER LYS SEQRES 9 B 263 PRO PHE MET SER LEU GLY ILE SER ILE MET ILE LYS LYS SEQRES 10 B 263 GLY THR PRO ILE GLU SER ALA GLU ASP LEU SER LYS GLN SEQRES 11 B 263 THR GLU ILE ALA TYR GLY THR LEU ASP SER GLY SER THR SEQRES 12 B 263 LYS GLU PHE PHE ARG ARG SER LYS ILE ALA VAL PHE ASP SEQRES 13 B 263 LYS MET TRP THR TYR MET ARG SER ALA GLU PRO SER VAL SEQRES 14 B 263 PHE VAL ARG THR THR ALA GLU GLY VAL ALA ARG VAL ARG SEQRES 15 B 263 LYS SER LYS GLY LYS TYR ALA TYR LEU LEU GLU SER THR SEQRES 16 B 263 MET ASN GLU TYR ILE GLU GLN ARG LYS PRO CYS ASP THR SEQRES 17 B 263 MET LYS VAL GLY GLY ASN LEU ASP SER LYS GLY TYR GLY SEQRES 18 B 263 ILE ALA THR PRO LYS GLY SER SER LEU ARG ASN ALA VAL SEQRES 19 B 263 ASN LEU ALA VAL LEU LYS LEU ASN GLU GLN GLY LEU LEU SEQRES 20 B 263 ASP LYS LEU LYS ASN LYS TRP TRP TYR ASP LYS GLY GLU SEQRES 21 B 263 CYS GLY SER HET GLU A 901 10 HET 9C0 A 902 44 HET SO4 A 903 5 HET SO4 A 904 5 HET GOL A 905 6 HET GOL A 906 6 HET GLU B 901 10 HET SO4 B 902 5 HET SO4 B 903 5 HET GOL B 904 6 HET GOL B 905 6 HET GOL B 906 6 HET GOL B 907 6 HETNAM GLU GLUTAMIC ACID HETNAM 9C0 9-(4-~{TERT}-BUTYLPHENYL)-3,4-DIHYDROPYRIDO[2,1-C][1,2, HETNAM 2 9C0 4]THIADIAZINE 2,2-DIOXIDE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GLU 2(C5 H9 N O4) FORMUL 4 9C0 C17 H20 N2 O2 S FORMUL 5 SO4 4(O4 S 2-) FORMUL 7 GOL 6(C3 H8 O3) FORMUL 16 HOH *562(H2 O) HELIX 1 AA1 ASN A 432 LEU A 436 5 5 HELIX 2 AA2 GLU A 437 GLU A 440 5 4 HELIX 3 AA3 GLY A 444 GLY A 458 1 15 HELIX 4 AA4 ASN A 482 TYR A 490 1 9 HELIX 5 AA5 THR A 503 GLU A 508 1 6 HELIX 6 AA6 SER A 656 LYS A 662 1 7 HELIX 7 AA7 GLY A 674 SER A 683 1 10 HELIX 8 AA8 ILE A 685 ALA A 698 1 14 HELIX 9 AA9 THR A 706 SER A 717 1 12 HELIX 10 AB1 SER A 727 GLN A 735 1 9 HELIX 11 AB2 LEU A 763 GLN A 777 1 15 HELIX 12 AB3 GLY A 778 TYR A 789 1 12 HELIX 13 AB4 ASN B 432 LEU B 436 5 5 HELIX 14 AB5 GLU B 437 GLU B 440 5 4 HELIX 15 AB6 GLY B 444 GLY B 458 1 15 HELIX 16 AB7 ASN B 482 TYR B 490 1 9 HELIX 17 AB8 THR B 503 GLU B 508 1 6 HELIX 18 AB9 SER B 656 LYS B 662 1 7 HELIX 19 AC1 GLY B 674 SER B 683 1 10 HELIX 20 AC2 ILE B 685 ALA B 698 1 14 HELIX 21 AC3 THR B 706 SER B 717 1 12 HELIX 22 AC4 SER B 727 GLN B 735 1 9 HELIX 23 AC5 LEU B 763 GLN B 777 1 15 HELIX 24 AC6 GLY B 778 TYR B 789 1 12 SHEET 1 AA1 3 TYR A 461 ILE A 465 0 SHEET 2 AA1 3 VAL A 416 THR A 420 1 N VAL A 418 O LYS A 462 SHEET 3 AA1 3 ILE A 495 ALA A 496 1 O ILE A 495 N THR A 419 SHEET 1 AA2 2 MET A 428 MET A 429 0 SHEET 2 AA2 2 TYR A 442 GLU A 443 -1 O GLU A 443 N MET A 428 SHEET 1 AA3 2 ILE A 510 PHE A 512 0 SHEET 2 AA3 2 ALA A 756 PRO A 758 -1 O THR A 757 N ASP A 511 SHEET 1 AA4 2 MET A 517 LEU A 519 0 SHEET 2 AA4 2 LYS A 751 TYR A 753 -1 O LYS A 751 N LEU A 519 SHEET 1 AA5 4 ALA A 667 GLY A 669 0 SHEET 2 AA5 4 TYR A 721 GLU A 726 1 O LEU A 724 N GLY A 669 SHEET 3 AA5 4 ILE A 521 LYS A 526 -1 N MET A 524 O TYR A 723 SHEET 4 AA5 4 THR A 741 VAL A 744 -1 O MET A 742 N ILE A 525 SHEET 1 AA6 3 TYR B 461 ILE B 465 0 SHEET 2 AA6 3 VAL B 416 THR B 420 1 N VAL B 418 O LYS B 462 SHEET 3 AA6 3 ILE B 495 ALA B 496 1 O ILE B 495 N THR B 419 SHEET 1 AA7 2 MET B 428 MET B 429 0 SHEET 2 AA7 2 TYR B 442 GLU B 443 -1 O GLU B 443 N MET B 428 SHEET 1 AA8 2 ILE B 510 PHE B 512 0 SHEET 2 AA8 2 ALA B 756 PRO B 758 -1 O THR B 757 N ASP B 511 SHEET 1 AA9 2 MET B 517 LEU B 519 0 SHEET 2 AA9 2 LYS B 751 TYR B 753 -1 O LYS B 751 N LEU B 519 SHEET 1 AB1 4 ALA B 667 GLY B 669 0 SHEET 2 AB1 4 TYR B 721 GLU B 726 1 O LEU B 724 N GLY B 669 SHEET 3 AB1 4 ILE B 521 LYS B 526 -1 N MET B 524 O TYR B 723 SHEET 4 AB1 4 THR B 741 VAL B 744 -1 O MET B 742 N ILE B 525 SSBOND 1 CYS A 739 CYS A 794 1555 1555 2.04 SSBOND 2 CYS B 739 CYS B 794 1555 1555 2.04 CISPEP 1 SER A 424 PRO A 425 0 1.30 CISPEP 2 GLU A 699 PRO A 700 0 -6.19 CISPEP 3 LYS A 737 PRO A 738 0 8.68 CISPEP 4 SER B 424 PRO B 425 0 -0.73 CISPEP 5 GLU B 699 PRO B 700 0 -6.95 CISPEP 6 LYS B 737 PRO B 738 0 9.24 SITE 1 AC1 13 TYR A 471 PRO A 499 LEU A 500 THR A 501 SITE 2 AC1 13 ARG A 506 GLY A 674 SER A 675 THR A 676 SITE 3 AC1 13 GLU A 726 TYR A 753 HOH A1040 HOH A1061 SITE 4 AC1 13 HOH A1074 SITE 1 AC2 26 ILE A 502 LYS A 514 PRO A 515 PHE A 516 SITE 2 AC2 26 MET A 517 SER A 518 SER A 750 LYS A 751 SITE 3 AC2 26 GLY A 752 ASN A 775 HOH A1001 HOH A1002 SITE 4 AC2 26 HOH A1150 HOH A1181 ILE B 502 LYS B 514 SITE 5 AC2 26 PRO B 515 PHE B 516 MET B 517 SER B 518 SITE 6 AC2 26 SER B 750 LYS B 751 GLY B 752 ASN B 775 SITE 7 AC2 26 HOH B1159 HOH B1169 SITE 1 AC3 5 ARG A 441 HOH A1004 HOH A1032 HOH A1050 SITE 2 AC3 5 HOH A1095 SITE 1 AC4 8 ALA A 473 SER A 673 LYS A 677 ARG A 681 SITE 2 AC4 8 HOH A1025 HOH A1043 HOH A1053 HOH A1117 SITE 1 AC5 9 GLY A 472 ALA A 473 TRP A 481 THR A 503 SITE 2 AC5 9 VAL A 505 ARG A 506 HOH A1011 HOH A1014 SITE 3 AC5 9 HOH A1025 SITE 1 AC6 3 ARG A 681 TRP A 692 ARG A 696 SITE 1 AC7 13 TYR B 471 PRO B 499 LEU B 500 THR B 501 SITE 2 AC7 13 ARG B 506 GLY B 674 SER B 675 THR B 676 SITE 3 AC7 13 GLU B 726 TYR B 753 HOH B1038 HOH B1048 SITE 4 AC7 13 HOH B1073 SITE 1 AC8 8 ALA B 473 SER B 673 LYS B 677 ARG B 681 SITE 2 AC8 8 HOH B1023 HOH B1029 HOH B1059 HOH B1136 SITE 1 AC9 5 HIS B 456 LYS B 773 GLN B 777 HOH B1032 SITE 2 AC9 5 HOH B1063 SITE 1 AD1 10 GLY B 472 ALA B 473 TRP B 481 THR B 503 SITE 2 AD1 10 VAL B 505 ARG B 506 GLU B 678 HOH B1008 SITE 3 AD1 10 HOH B1016 HOH B1023 SITE 1 AD2 5 ASN A 747 ASP A 749 SER A 750 ASP B 781 SITE 2 AD2 5 HOH B1014 SITE 1 AD3 3 ARG B 681 TRP B 692 ARG B 696 SITE 1 AD4 4 ASP A 781 ASN B 747 ASP B 749 SER B 750 CRYST1 47.105 64.623 90.291 90.00 90.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021229 0.000000 0.000005 0.00000 SCALE2 0.000000 0.015474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011075 0.00000