HEADER TRANSFERASE 13-MAR-18 5ZHI TITLE APO CRYSTAL STRUCTURE OF TRMD FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN CDC 1551 / SOURCE 3 OSHKOSH); SOURCE 4 ORGANISM_TAXID: 83331; SOURCE 5 STRAIN: CDC 1551 / OSHKOSH; SOURCE 6 GENE: TRMD; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRNA METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHONG,K.K.PASUNOOTI,S.BALAMKUNDU,Y.W.WONG,Q.NAH,C.F.LIU,J.LESCAR, AUTHOR 2 P.C.DEDON REVDAT 5 03-APR-24 5ZHI 1 REMARK REVDAT 4 27-MAR-24 5ZHI 1 REMARK REVDAT 3 25-SEP-19 5ZHI 1 JRNL REVDAT 2 04-SEP-19 5ZHI 1 JRNL REVDAT 1 06-MAR-19 5ZHI 0 JRNL AUTH W.ZHONG,K.K.PASUNOOTI,S.BALAMKUNDU,Y.H.WONG,Q.NAH,V.GADI, JRNL AUTH 2 S.GNANAKALAI,Y.H.CHIONH,M.E.MCBEE,P.GOPAL,S.H.LIM,N.OLIVIER, JRNL AUTH 3 E.T.BUURMAN,T.DICK,C.F.LIU,J.LESCAR,P.C.DEDON JRNL TITL THIENOPYRIMIDINONE DERIVATIVES THAT INHIBIT BACTERIAL TRNA JRNL TITL 2 (GUANINE37-N1)-METHYLTRANSFERASE (TRMD) BY RESTRUCTURING THE JRNL TITL 3 ACTIVE SITE WITH A TYROSINE-FLIPPING MECHANISM. JRNL REF J.MED.CHEM. V. 62 7788 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31442049 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00582 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 18708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 983 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1249 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.1670 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3245 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.73000 REMARK 3 B22 (A**2) : 13.05000 REMARK 3 B33 (A**2) : -5.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.041 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.622 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3322 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3152 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4521 ; 1.304 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7248 ; 0.762 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 6.376 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;35.249 ;22.109 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 536 ;16.303 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;22.544 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 513 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3706 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 698 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1681 ; 1.899 ; 1.881 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1680 ; 1.896 ; 1.881 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2096 ; 2.929 ; 2.806 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2097 ; 2.928 ; 2.807 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1641 ; 2.017 ; 2.080 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1642 ; 2.016 ; 2.081 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2426 ; 3.157 ; 3.043 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 13026 ; 5.718 ;34.906 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 13008 ; 5.707 ;34.913 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 226 B 1 226 12306 0.10 0.05 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.544 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -L, -K, -H REMARK 3 TWIN FRACTION : 0.456 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZHI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300007057. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19717 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 41.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.22600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: HOMOLOGY MODELING FROM I-TASSER SERVER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS-TRIS AT PH 6.5, 20%(W/V) REMARK 280 PEG3350, 0.1M AMMONIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.53500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 159 REMARK 465 LEU A 160 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 PRO A 163 REMARK 465 ALA A 164 REMARK 465 SER A 165 REMARK 465 HIS A 166 REMARK 465 GLN A 167 REMARK 465 ASP A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 THR A 173 REMARK 465 GLY A 174 REMARK 465 LEU A 175 REMARK 465 ASP A 176 REMARK 465 SER A 227 REMARK 465 HIS A 228 REMARK 465 PRO A 229 REMARK 465 ASP A 230 REMARK 465 GLY A 231 REMARK 465 SER A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 PRO B 163 REMARK 465 ALA B 164 REMARK 465 SER B 165 REMARK 465 HIS B 166 REMARK 465 GLN B 167 REMARK 465 ASP B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 THR B 173 REMARK 465 GLY B 174 REMARK 465 LEU B 175 REMARK 465 ASP B 176 REMARK 465 SER B 227 REMARK 465 HIS B 228 REMARK 465 PRO B 229 REMARK 465 ASP B 230 REMARK 465 GLY B 231 REMARK 465 SER B 232 REMARK 465 HIS B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 465 HIS B 237 REMARK 465 HIS B 238 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 330 O HOH B 339 2.05 REMARK 500 OE1 GLN A 96 O HOH A 301 2.07 REMARK 500 O HOH A 332 O HOH A 342 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N MET A 1 OE1 GLU A 221 1556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 85 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 19 -133.82 49.91 REMARK 500 TYR A 111 -134.01 61.05 REMARK 500 ASP A 115 124.72 -34.06 REMARK 500 SER B 19 -121.91 35.47 REMARK 500 TYR B 111 -133.77 59.31 REMARK 500 ASP B 115 124.70 -34.64 REMARK 500 REMARK 500 REMARK: NULL DBREF 5ZHI A 1 230 UNP P9WFY6 TRMD_MYCTO 1 230 DBREF 5ZHI B 1 230 UNP P9WFY6 TRMD_MYCTO 1 230 SEQADV 5ZHI GLY A 231 UNP P9WFY6 EXPRESSION TAG SEQADV 5ZHI SER A 232 UNP P9WFY6 EXPRESSION TAG SEQADV 5ZHI HIS A 233 UNP P9WFY6 EXPRESSION TAG SEQADV 5ZHI HIS A 234 UNP P9WFY6 EXPRESSION TAG SEQADV 5ZHI HIS A 235 UNP P9WFY6 EXPRESSION TAG SEQADV 5ZHI HIS A 236 UNP P9WFY6 EXPRESSION TAG SEQADV 5ZHI HIS A 237 UNP P9WFY6 EXPRESSION TAG SEQADV 5ZHI HIS A 238 UNP P9WFY6 EXPRESSION TAG SEQADV 5ZHI GLY B 231 UNP P9WFY6 EXPRESSION TAG SEQADV 5ZHI SER B 232 UNP P9WFY6 EXPRESSION TAG SEQADV 5ZHI HIS B 233 UNP P9WFY6 EXPRESSION TAG SEQADV 5ZHI HIS B 234 UNP P9WFY6 EXPRESSION TAG SEQADV 5ZHI HIS B 235 UNP P9WFY6 EXPRESSION TAG SEQADV 5ZHI HIS B 236 UNP P9WFY6 EXPRESSION TAG SEQADV 5ZHI HIS B 237 UNP P9WFY6 EXPRESSION TAG SEQADV 5ZHI HIS B 238 UNP P9WFY6 EXPRESSION TAG SEQRES 1 A 238 MET ARG ILE ASP ILE VAL THR ILE PHE PRO ALA CYS LEU SEQRES 2 A 238 ASP PRO LEU ARG GLN SER LEU PRO GLY LYS ALA ILE GLU SEQRES 3 A 238 SER GLY LEU VAL ASP LEU ASN VAL HIS ASP LEU ARG ARG SEQRES 4 A 238 TRP THR HIS ASP VAL HIS HIS SER VAL ASP ASP ALA PRO SEQRES 5 A 238 TYR GLY GLY GLY PRO GLY MET VAL MET LYS ALA PRO VAL SEQRES 6 A 238 TRP GLY GLU ALA LEU ASP GLU ILE CYS SER SER GLU THR SEQRES 7 A 238 LEU LEU ILE VAL PRO THR PRO ALA GLY VAL LEU PHE THR SEQRES 8 A 238 GLN ALA THR ALA GLN ARG TRP THR THR GLU SER HIS LEU SEQRES 9 A 238 VAL PHE ALA CYS GLY ARG TYR GLU GLY ILE ASP GLN ARG SEQRES 10 A 238 VAL VAL GLN ASP ALA ALA ARG ARG MET ARG VAL GLU GLU SEQRES 11 A 238 VAL SER ILE GLY ASP TYR VAL LEU PRO GLY GLY GLU SER SEQRES 12 A 238 ALA ALA VAL VAL MET VAL GLU ALA VAL LEU ARG LEU LEU SEQRES 13 A 238 ALA GLY VAL LEU GLY ASN PRO ALA SER HIS GLN ASP ASP SEQRES 14 A 238 SER HIS SER THR GLY LEU ASP GLY LEU LEU GLU GLY PRO SEQRES 15 A 238 SER TYR THR ARG PRO ALA SER TRP ARG GLY LEU ASP VAL SEQRES 16 A 238 PRO GLU VAL LEU LEU SER GLY ASP HIS ALA ARG ILE ALA SEQRES 17 A 238 ALA TRP ARG ARG GLU VAL SER LEU GLN ARG THR ARG GLU SEQRES 18 A 238 ARG ARG PRO ASP LEU SER HIS PRO ASP GLY SER HIS HIS SEQRES 19 A 238 HIS HIS HIS HIS SEQRES 1 B 238 MET ARG ILE ASP ILE VAL THR ILE PHE PRO ALA CYS LEU SEQRES 2 B 238 ASP PRO LEU ARG GLN SER LEU PRO GLY LYS ALA ILE GLU SEQRES 3 B 238 SER GLY LEU VAL ASP LEU ASN VAL HIS ASP LEU ARG ARG SEQRES 4 B 238 TRP THR HIS ASP VAL HIS HIS SER VAL ASP ASP ALA PRO SEQRES 5 B 238 TYR GLY GLY GLY PRO GLY MET VAL MET LYS ALA PRO VAL SEQRES 6 B 238 TRP GLY GLU ALA LEU ASP GLU ILE CYS SER SER GLU THR SEQRES 7 B 238 LEU LEU ILE VAL PRO THR PRO ALA GLY VAL LEU PHE THR SEQRES 8 B 238 GLN ALA THR ALA GLN ARG TRP THR THR GLU SER HIS LEU SEQRES 9 B 238 VAL PHE ALA CYS GLY ARG TYR GLU GLY ILE ASP GLN ARG SEQRES 10 B 238 VAL VAL GLN ASP ALA ALA ARG ARG MET ARG VAL GLU GLU SEQRES 11 B 238 VAL SER ILE GLY ASP TYR VAL LEU PRO GLY GLY GLU SER SEQRES 12 B 238 ALA ALA VAL VAL MET VAL GLU ALA VAL LEU ARG LEU LEU SEQRES 13 B 238 ALA GLY VAL LEU GLY ASN PRO ALA SER HIS GLN ASP ASP SEQRES 14 B 238 SER HIS SER THR GLY LEU ASP GLY LEU LEU GLU GLY PRO SEQRES 15 B 238 SER TYR THR ARG PRO ALA SER TRP ARG GLY LEU ASP VAL SEQRES 16 B 238 PRO GLU VAL LEU LEU SER GLY ASP HIS ALA ARG ILE ALA SEQRES 17 B 238 ALA TRP ARG ARG GLU VAL SER LEU GLN ARG THR ARG GLU SEQRES 18 B 238 ARG ARG PRO ASP LEU SER HIS PRO ASP GLY SER HIS HIS SEQRES 19 B 238 HIS HIS HIS HIS FORMUL 3 HOH *87(H2 O) HELIX 1 AA1 PHE A 9 ARG A 17 5 9 HELIX 2 AA2 GLN A 18 SER A 27 1 10 HELIX 3 AA3 ARG A 38 THR A 41 5 4 HELIX 4 AA4 LYS A 62 CYS A 74 1 13 HELIX 5 AA5 THR A 91 THR A 99 1 9 HELIX 6 AA6 GLN A 116 ALA A 123 1 8 HELIX 7 AA7 GLY A 141 GLY A 158 1 18 HELIX 8 AA8 PRO A 196 SER A 201 1 6 HELIX 9 AA9 ASP A 203 ARG A 223 1 21 HELIX 10 AB1 PHE B 9 ARG B 17 5 9 HELIX 11 AB2 GLN B 18 SER B 27 1 10 HELIX 12 AB3 ARG B 38 THR B 41 5 4 HELIX 13 AB4 LYS B 62 CYS B 74 1 13 HELIX 14 AB5 THR B 91 THR B 99 1 9 HELIX 15 AB6 GLN B 116 ALA B 123 1 8 HELIX 16 AB7 GLY B 141 GLY B 158 1 18 HELIX 17 AB8 PRO B 196 SER B 201 5 6 HELIX 18 AB9 ASP B 203 ARG B 223 1 21 SHEET 1 AA1 6 ASP A 31 ASP A 36 0 SHEET 2 AA1 6 ARG A 2 THR A 7 1 N ILE A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O PHE A 106 N VAL A 6 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N ILE A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 127 N LEU A 80 SHEET 6 AA1 6 VAL A 88 LEU A 89 1 N VAL A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 LEU A 193 ASP A 194 -1 O LEU A 193 N TRP A 190 SHEET 1 AA4 6 ASP B 31 ASP B 36 0 SHEET 2 AA4 6 ARG B 2 THR B 7 1 N ILE B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O PHE B 106 N VAL B 6 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N ILE B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O GLU B 129 N LEU B 80 SHEET 6 AA4 6 VAL B 88 LEU B 89 1 N VAL B 88 O SER B 132 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 LEU B 193 ASP B 194 -1 O LEU B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 7.15 CISPEP 2 ARG B 186 PRO B 187 0 -4.92 CRYST1 44.170 113.070 44.210 90.00 110.75 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022640 0.000000 0.008577 0.00000 SCALE2 0.000000 0.008844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024188 0.00000