HEADER MEMBRANE PROTEIN 15-MAR-18 5ZIH TITLE CRYSTAL STRUCTURE OF THE RED LIGHT-ACTIVATED CHANNELRHODOPSIN TITLE 2 CHRIMSON. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSORY OPSIN A,CHRIMSON; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: CHRIMSON WITH SUBSTITUTED N-TERMINAL CRCHR1 SEQUENCE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII, CHLAMYDOMONAS SOURCE 3 NOCTIGAMA; SOURCE 4 ORGANISM_COMMON: CHLAMYDOMONAS SMITHII; SOURCE 5 ORGANISM_TAXID: 3055, 28456; SOURCE 6 GENE: CSOA; SOURCE 7 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS MEMBRANE PROTEIN, RHODOPSIN, ION CHANNEL EXPDTA X-RAY DIFFRACTION AUTHOR K.ODA,J.VIEROCK,S.OISHI,R.TANIGUCHI,K.YAMASHITA,T.NISHIZAWA, AUTHOR 2 P.HEGEMANN,O.NUREKI REVDAT 3 22-NOV-23 5ZIH 1 REMARK REVDAT 2 28-NOV-18 5ZIH 1 REMARK REVDAT 1 21-NOV-18 5ZIH 0 JRNL AUTH K.ODA,J.VIEROCK,S.OISHI,S.RODRIGUEZ-ROZADA,R.TANIGUCHI, JRNL AUTH 2 K.YAMASHITA,J.S.WIEGERT,T.NISHIZAWA,P.HEGEMANN,O.NUREKI JRNL TITL CRYSTAL STRUCTURE OF THE RED LIGHT-ACTIVATED JRNL TITL 2 CHANNELRHODOPSIN CHRIMSON. JRNL REF NAT COMMUN V. 9 3949 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30258177 JRNL DOI 10.1038/S41467-018-06421-9 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 26751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8265 - 6.9317 0.98 1369 151 0.2186 0.2607 REMARK 3 2 6.9317 - 5.5044 1.00 1306 144 0.2281 0.2929 REMARK 3 3 5.5044 - 4.8093 1.00 1300 146 0.2111 0.2370 REMARK 3 4 4.8093 - 4.3699 1.00 1276 140 0.1860 0.2506 REMARK 3 5 4.3699 - 4.0568 1.00 1269 143 0.1878 0.2486 REMARK 3 6 4.0568 - 3.8177 1.00 1277 140 0.1927 0.2501 REMARK 3 7 3.8177 - 3.6266 1.00 1258 139 0.2060 0.2480 REMARK 3 8 3.6266 - 3.4688 1.00 1275 142 0.2202 0.2646 REMARK 3 9 3.4688 - 3.3353 1.00 1263 140 0.2341 0.2701 REMARK 3 10 3.3353 - 3.2202 0.99 1249 140 0.2268 0.2932 REMARK 3 11 3.2202 - 3.1195 1.00 1255 140 0.2281 0.2819 REMARK 3 12 3.1195 - 3.0304 1.00 1253 139 0.2339 0.3094 REMARK 3 13 3.0304 - 2.9506 0.99 1238 137 0.2531 0.2809 REMARK 3 14 2.9506 - 2.8786 1.00 1256 138 0.2623 0.3262 REMARK 3 15 2.8786 - 2.8132 1.00 1241 139 0.2840 0.2950 REMARK 3 16 2.8132 - 2.7533 1.00 1240 138 0.2737 0.3470 REMARK 3 17 2.7533 - 2.6983 1.00 1270 140 0.2764 0.3479 REMARK 3 18 2.6983 - 2.6473 1.00 1235 137 0.3044 0.3455 REMARK 3 19 2.6473 - 2.6001 0.99 1250 138 0.3144 0.3686 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZIH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300007141. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30180 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3UG9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG500DME, NA CITRATE, NA MALONATE, REMARK 280 SARCOSINE, PH 7.0, LIPIDIC CUBIC PHASE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.49500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.07000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.72000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.07000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.49500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.72000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 4 REMARK 465 SER A 5 REMARK 465 ARG A 6 REMARK 465 ARG A 7 REMARK 465 PRO A 8 REMARK 465 TRP A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 ALA A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 VAL A 17 REMARK 465 ALA A 18 REMARK 465 LEU A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 ALA A 24 REMARK 465 GLY A 25 REMARK 465 ALA A 26 REMARK 465 SER A 27 REMARK 465 THR A 28 REMARK 465 GLY A 29 REMARK 465 SER A 30 REMARK 465 ASP A 31 REMARK 465 ALA A 32 REMARK 465 THR A 33 REMARK 465 VAL A 34 REMARK 465 PRO A 35 REMARK 465 VAL A 36 REMARK 465 ALA A 37 REMARK 465 THR A 38 REMARK 465 GLN A 39 REMARK 465 ASP A 40 REMARK 465 GLY A 41 REMARK 465 PRO A 42 REMARK 465 ASP A 43 REMARK 465 TYR A 44 REMARK 465 VAL A 45 REMARK 465 PHE A 46 REMARK 465 HIS A 47 REMARK 465 ARG A 48 REMARK 465 ALA A 49 REMARK 465 HIS A 50 REMARK 465 GLU A 51 REMARK 465 ARG A 52 REMARK 465 MET A 53 REMARK 465 LEU A 54 REMARK 465 PHE A 55 REMARK 465 GLN A 56 REMARK 465 THR A 57 REMARK 465 SER A 115 REMARK 465 ALA A 116 REMARK 465 TRP A 117 REMARK 465 LYS A 118 REMARK 465 ALA A 119 REMARK 465 VAL A 342 REMARK 465 GLU A 343 REMARK 465 GLU A 344 REMARK 465 GLU A 345 REMARK 465 ASP A 346 REMARK 465 GLU A 347 REMARK 465 ASP A 348 REMARK 465 THR A 349 REMARK 465 VAL A 350 REMARK 465 MET B 4 REMARK 465 SER B 5 REMARK 465 ARG B 6 REMARK 465 ARG B 7 REMARK 465 PRO B 8 REMARK 465 TRP B 9 REMARK 465 LEU B 10 REMARK 465 LEU B 11 REMARK 465 ALA B 12 REMARK 465 LEU B 13 REMARK 465 ALA B 14 REMARK 465 LEU B 15 REMARK 465 ALA B 16 REMARK 465 VAL B 17 REMARK 465 ALA B 18 REMARK 465 LEU B 19 REMARK 465 ALA B 20 REMARK 465 ALA B 21 REMARK 465 GLY B 22 REMARK 465 SER B 23 REMARK 465 ALA B 24 REMARK 465 GLY B 25 REMARK 465 ALA B 26 REMARK 465 SER B 27 REMARK 465 THR B 28 REMARK 465 GLY B 29 REMARK 465 SER B 30 REMARK 465 ASP B 31 REMARK 465 ALA B 32 REMARK 465 THR B 33 REMARK 465 VAL B 34 REMARK 465 PRO B 35 REMARK 465 VAL B 36 REMARK 465 ALA B 37 REMARK 465 THR B 38 REMARK 465 GLN B 39 REMARK 465 ASP B 40 REMARK 465 GLY B 41 REMARK 465 PRO B 42 REMARK 465 ASP B 43 REMARK 465 TYR B 44 REMARK 465 VAL B 45 REMARK 465 PHE B 46 REMARK 465 HIS B 47 REMARK 465 ARG B 48 REMARK 465 ALA B 49 REMARK 465 HIS B 50 REMARK 465 GLU B 51 REMARK 465 ARG B 52 REMARK 465 MET B 53 REMARK 465 ALA B 116 REMARK 465 TRP B 117 REMARK 465 LYS B 118 REMARK 465 VAL B 342 REMARK 465 GLU B 343 REMARK 465 GLU B 344 REMARK 465 GLU B 345 REMARK 465 ASP B 346 REMARK 465 GLU B 347 REMARK 465 ASP B 348 REMARK 465 THR B 349 REMARK 465 VAL B 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 ASN A 64 CG OD1 ND2 REMARK 470 ILE A 70 CG1 CG2 CD1 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 ASP A 186 CG OD1 OD2 REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 THR A 326 OG1 CG2 REMARK 470 THR A 327 OG1 CG2 REMARK 470 LYS A 328 CG CD CE NZ REMARK 470 GLU A 330 CG CD OE1 OE2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 GLU A 335 CG CD OE1 OE2 REMARK 470 GLU A 337 CG CD OE1 OE2 REMARK 470 GLU A 340 CG CD OE1 OE2 REMARK 470 LEU B 54 CG CD1 CD2 REMARK 470 LEU B 183 CG CD1 CD2 REMARK 470 LYS B 184 CG CD CE NZ REMARK 470 ASN B 185 CG OD1 ND2 REMARK 470 SER B 188 OG REMARK 470 LYS B 189 CG CD CE NZ REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 LEU B 318 CG CD1 CD2 REMARK 470 THR B 326 OG1 CG2 REMARK 470 THR B 327 OG1 CG2 REMARK 470 LYS B 328 CG CD CE NZ REMARK 470 GLU B 330 CG CD OE1 OE2 REMARK 470 GLU B 337 CG CD OE1 OE2 REMARK 470 VAL B 338 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 63 -122.88 54.41 REMARK 500 TYR A 159 76.17 -105.30 REMARK 500 SER A 181 -165.29 -77.64 REMARK 500 LEU A 183 106.65 -48.75 REMARK 500 ASP A 213 -137.01 60.62 REMARK 500 ILE A 331 -66.29 -123.69 REMARK 500 ASN B 63 -141.87 60.16 REMARK 500 LYS B 142 38.89 -140.01 REMARK 500 SER B 181 -169.58 -76.31 REMARK 500 LEU B 183 -176.88 64.74 REMARK 500 TYR B 187 -70.79 -77.90 REMARK 500 SER B 188 -139.82 70.66 REMARK 500 ASP B 213 -144.18 61.14 REMARK 500 LYS B 247 16.79 -69.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 401 REMARK 610 OLC A 404 REMARK 610 OLC A 406 REMARK 610 OLC A 407 REMARK 610 OLC B 403 REMARK 610 OLC B 404 REMARK 610 OLC B 405 REMARK 610 OLC B 406 REMARK 610 OLC B 407 REMARK 610 OLC B 408 REMARK 610 OLC B 409 REMARK 610 OLC B 410 REMARK 610 OLC B 411 REMARK 610 OLC B 412 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 412 DBREF 5ZIH A 4 82 UNP Q8L435 Q8L435_CHLRE 1 79 DBREF 5ZIH A 83 350 PDB 5ZIH 5ZIH 83 350 DBREF 5ZIH B 4 82 UNP Q8L435 Q8L435_CHLRE 1 79 DBREF 5ZIH B 83 350 PDB 5ZIH 5ZIH 83 350 SEQRES 1 A 347 MET SER ARG ARG PRO TRP LEU LEU ALA LEU ALA LEU ALA SEQRES 2 A 347 VAL ALA LEU ALA ALA GLY SER ALA GLY ALA SER THR GLY SEQRES 3 A 347 SER ASP ALA THR VAL PRO VAL ALA THR GLN ASP GLY PRO SEQRES 4 A 347 ASP TYR VAL PHE HIS ARG ALA HIS GLU ARG MET LEU PHE SEQRES 5 A 347 GLN THR SER TYR THR LEU GLU ASN ASN GLY SER VAL ILE SEQRES 6 A 347 CYS ILE PRO ASN ASN GLY GLN CYS PHE CYS LEU ALA TRP SEQRES 7 A 347 LEU HIS SER ARG GLY THR PRO GLY GLU LYS ILE GLY ALA SEQRES 8 A 347 GLN VAL CYS GLN TRP ILE ALA PHE SER ILE ALA ILE ALA SEQRES 9 A 347 LEU LEU THR PHE TYR GLY PHE SER ALA TRP LYS ALA THR SEQRES 10 A 347 CYS GLY TRP GLU GLU VAL TYR VAL CYS CYS VAL GLU VAL SEQRES 11 A 347 LEU PHE VAL THR LEU GLU ILE PHE LYS GLU PHE SER SER SEQRES 12 A 347 PRO ALA THR VAL TYR LEU SER THR GLY ASN HIS ALA TYR SEQRES 13 A 347 CYS LEU ARG TYR PHE GLU TRP LEU LEU SER CYS PRO VAL SEQRES 14 A 347 ILE LEU ILE LYS LEU SER ASN LEU SER GLY LEU LYS ASN SEQRES 15 A 347 ASP TYR SER LYS ARG THR MET GLY LEU ILE VAL SER CYS SEQRES 16 A 347 VAL GLY MET ILE VAL PHE GLY MET ALA ALA GLY LEU ALA SEQRES 17 A 347 THR ASP TRP LEU LYS TRP LEU LEU TYR ILE VAL SER CYS SEQRES 18 A 347 ILE TYR GLY GLY TYR MET TYR PHE GLN ALA ALA LYS CYS SEQRES 19 A 347 TYR VAL GLU ALA ASN HIS SER VAL PRO LYS GLY HIS CYS SEQRES 20 A 347 ARG MET VAL VAL LYS LEU MET ALA TYR ALA TYR PHE ALA SEQRES 21 A 347 SER TRP GLY SER TYR PRO ILE LEU TRP ALA VAL GLY PRO SEQRES 22 A 347 GLU GLY LEU LEU LYS LEU SER PRO TYR ALA ASN SER ILE SEQRES 23 A 347 GLY HIS SER ILE CYS ASP ILE ILE ALA LYR GLU PHE TRP SEQRES 24 A 347 THR PHE LEU ALA HIS HIS LEU ARG ILE LYS ILE HIS GLU SEQRES 25 A 347 HIS ILE LEU ILE HIS GLY ASP ILE ARG LYS THR THR LYS SEQRES 26 A 347 MET GLU ILE GLY GLY GLU GLU VAL GLU VAL GLU GLU PHE SEQRES 27 A 347 VAL GLU GLU GLU ASP GLU ASP THR VAL SEQRES 1 B 347 MET SER ARG ARG PRO TRP LEU LEU ALA LEU ALA LEU ALA SEQRES 2 B 347 VAL ALA LEU ALA ALA GLY SER ALA GLY ALA SER THR GLY SEQRES 3 B 347 SER ASP ALA THR VAL PRO VAL ALA THR GLN ASP GLY PRO SEQRES 4 B 347 ASP TYR VAL PHE HIS ARG ALA HIS GLU ARG MET LEU PHE SEQRES 5 B 347 GLN THR SER TYR THR LEU GLU ASN ASN GLY SER VAL ILE SEQRES 6 B 347 CYS ILE PRO ASN ASN GLY GLN CYS PHE CYS LEU ALA TRP SEQRES 7 B 347 LEU HIS SER ARG GLY THR PRO GLY GLU LYS ILE GLY ALA SEQRES 8 B 347 GLN VAL CYS GLN TRP ILE ALA PHE SER ILE ALA ILE ALA SEQRES 9 B 347 LEU LEU THR PHE TYR GLY PHE SER ALA TRP LYS ALA THR SEQRES 10 B 347 CYS GLY TRP GLU GLU VAL TYR VAL CYS CYS VAL GLU VAL SEQRES 11 B 347 LEU PHE VAL THR LEU GLU ILE PHE LYS GLU PHE SER SER SEQRES 12 B 347 PRO ALA THR VAL TYR LEU SER THR GLY ASN HIS ALA TYR SEQRES 13 B 347 CYS LEU ARG TYR PHE GLU TRP LEU LEU SER CYS PRO VAL SEQRES 14 B 347 ILE LEU ILE LYS LEU SER ASN LEU SER GLY LEU LYS ASN SEQRES 15 B 347 ASP TYR SER LYS ARG THR MET GLY LEU ILE VAL SER CYS SEQRES 16 B 347 VAL GLY MET ILE VAL PHE GLY MET ALA ALA GLY LEU ALA SEQRES 17 B 347 THR ASP TRP LEU LYS TRP LEU LEU TYR ILE VAL SER CYS SEQRES 18 B 347 ILE TYR GLY GLY TYR MET TYR PHE GLN ALA ALA LYS CYS SEQRES 19 B 347 TYR VAL GLU ALA ASN HIS SER VAL PRO LYS GLY HIS CYS SEQRES 20 B 347 ARG MET VAL VAL LYS LEU MET ALA TYR ALA TYR PHE ALA SEQRES 21 B 347 SER TRP GLY SER TYR PRO ILE LEU TRP ALA VAL GLY PRO SEQRES 22 B 347 GLU GLY LEU LEU LYS LEU SER PRO TYR ALA ASN SER ILE SEQRES 23 B 347 GLY HIS SER ILE CYS ASP ILE ILE ALA LYR GLU PHE TRP SEQRES 24 B 347 THR PHE LEU ALA HIS HIS LEU ARG ILE LYS ILE HIS GLU SEQRES 25 B 347 HIS ILE LEU ILE HIS GLY ASP ILE ARG LYS THR THR LYS SEQRES 26 B 347 MET GLU ILE GLY GLY GLU GLU VAL GLU VAL GLU GLU PHE SEQRES 27 B 347 VAL GLU GLU GLU ASP GLU ASP THR VAL MODRES 5ZIH LYR A 299 MODIFIED RESIDUE MODRES 5ZIH LYR B 299 MODIFIED RESIDUE HET LYR A 299 29 HET LYR B 299 29 HET OLC A 401 19 HET OLC A 402 25 HET OLC A 403 25 HET OLC A 404 18 HET OLC A 405 25 HET OLC A 406 20 HET OLC A 407 15 HET OLC B 401 25 HET OLC B 402 25 HET OLC B 403 20 HET OLC B 404 14 HET OLC B 405 23 HET OLC B 406 20 HET OLC B 407 20 HET OLC B 408 15 HET OLC B 409 14 HET OLC B 410 21 HET OLC B 411 16 HET OLC B 412 14 HETNAM LYR N~6~-[(2Z,4E,6E,8E)-3,7-DIMETHYL-9-(2,6,6- HETNAM 2 LYR TRIMETHYLCYCLOHEX-1-EN-1-YL)NONA-2,4,6,8- HETNAM 3 LYR TETRAENYL]LYSINE HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 1 LYR 2(C26 H42 N2 O2) FORMUL 3 OLC 19(C21 H40 O4) FORMUL 22 HOH *37(H2 O) HELIX 1 AA1 CYS A 78 HIS A 83 5 6 HELIX 2 AA2 THR A 87 GLY A 113 1 27 HELIX 3 AA3 GLY A 122 GLU A 143 1 22 HELIX 4 AA4 TYR A 159 SER A 178 1 20 HELIX 5 AA5 SER A 188 ALA A 211 1 24 HELIX 6 AA6 ASP A 213 SER A 244 1 32 HELIX 7 AA7 GLY A 248 GLY A 275 1 28 HELIX 8 AA8 SER A 283 GLU A 300 1 18 HELIX 9 AA9 GLU A 300 GLY A 321 1 22 HELIX 10 AB1 CYS B 78 HIS B 83 5 6 HELIX 11 AB2 THR B 87 GLY B 113 1 27 HELIX 12 AB3 GLY B 122 GLU B 143 1 22 HELIX 13 AB4 TYR B 159 ASN B 179 1 21 HELIX 14 AB5 TYR B 187 ALA B 211 1 25 HELIX 15 AB6 THR B 212 HIS B 243 1 32 HELIX 16 AB7 GLY B 248 GLY B 266 1 19 HELIX 17 AB8 GLY B 266 GLY B 275 1 10 HELIX 18 AB9 SER B 283 LYR B 299 1 17 HELIX 19 AC1 GLU B 300 GLY B 321 1 22 SHEET 1 AA1 4 THR A 60 GLU A 62 0 SHEET 2 AA1 4 VAL A 67 PRO A 71 -1 O CYS A 69 N THR A 60 SHEET 3 AA1 4 VAL B 67 PRO B 71 -1 O ILE B 68 N ILE A 70 SHEET 4 AA1 4 THR B 60 GLU B 62 -1 N THR B 60 O CYS B 69 SHEET 1 AA2 2 VAL A 150 TYR A 151 0 SHEET 2 AA2 2 HIS A 157 ALA A 158 -1 O ALA A 158 N VAL A 150 SHEET 1 AA3 2 LYS A 325 GLU A 330 0 SHEET 2 AA3 2 GLU A 335 GLU A 340 -1 O VAL A 336 N MET A 329 SHEET 1 AA4 2 VAL B 150 TYR B 151 0 SHEET 2 AA4 2 HIS B 157 ALA B 158 -1 O ALA B 158 N VAL B 150 SHEET 1 AA5 2 LYS B 325 GLU B 330 0 SHEET 2 AA5 2 GLU B 335 GLU B 340 -1 O VAL B 336 N MET B 329 SSBOND 1 CYS A 69 CYS B 69 1555 1555 2.06 SSBOND 2 CYS A 76 CYS B 78 1555 1555 2.10 SSBOND 3 CYS A 78 CYS B 76 1555 1555 2.16 LINK C ALA A 298 N LYR A 299 1555 1555 1.33 LINK C LYR A 299 N GLU A 300 1555 1555 1.32 LINK C ALA B 298 N LYR B 299 1555 1555 1.33 LINK C LYR B 299 N GLU B 300 1555 1555 1.32 CISPEP 1 SER A 146 PRO A 147 0 7.58 CISPEP 2 SER B 146 PRO B 147 0 2.60 SITE 1 AC1 10 GLN A 95 VAL A 96 ILE A 100 OLC A 405 SITE 2 AC1 10 TYR B 220 CYS B 224 GLY B 228 PHE B 232 SITE 3 AC1 10 ALA B 235 PRO B 269 SITE 1 AC2 2 TYR A 229 OLC A 406 SITE 1 AC3 4 ILE A 104 PHE A 301 PHE A 304 TRP B 217 SITE 1 AC4 3 TRP A 217 LEU A 279 PHE B 304 SITE 1 AC5 9 GLN A 95 TRP A 99 SER A 103 ILE A 106 SITE 2 AC5 9 OLC A 401 PHE B 262 SER B 267 ILE B 270 SITE 3 AC5 9 OLC B 408 SITE 1 AC6 7 LYS A 189 GLY A 193 OLC A 402 ALA B 119 SITE 2 AC6 7 TRP B 123 TYR B 127 LEU B 134 SITE 1 AC7 4 TYR A 259 TRP B 99 PHE B 141 OLC B 402 SITE 1 AC8 11 TYR A 220 CYS A 224 GLY A 228 TYR A 231 SITE 2 AC8 11 PHE A 232 VAL A 239 GLN B 95 VAL B 96 SITE 3 AC8 11 ILE B 100 SER B 103 ALA B 107 SITE 1 AC9 8 PHE A 262 ALA A 263 GLY A 266 SER A 267 SITE 2 AC9 8 OLC A 407 TRP B 99 PHE B 102 THR B 110 SITE 1 AD1 6 GLY A 228 TYR A 229 PHE A 232 VAL B 96 SITE 2 AD1 6 ILE B 100 OLC B 410 SITE 1 AD2 7 PHE A 135 LEU A 138 SER A 146 LEU A 161 SITE 2 AD2 7 LEU A 168 ALA B 207 LEU B 219 SITE 1 AD3 2 ILE A 100 PHE B 232 SITE 1 AD4 7 TRP A 123 TYR A 127 CYS A 130 LYS B 189 SITE 2 AD4 7 TYR B 226 TYR B 229 OLC B 407 SITE 1 AD5 3 LEU A 134 TYR B 229 OLC B 406 SITE 1 AD6 3 OLC A 405 ALA B 258 TYR B 259 SITE 1 AD7 6 PHE A 204 ALA A 207 SER B 146 PHE B 164 SITE 2 AD7 6 GLU B 165 LEU B 168 SITE 1 AD8 4 GLY B 89 ILE B 293 OLC B 403 OLC B 412 SITE 1 AD9 6 ALA B 263 ILE B 289 GLY B 290 CYS B 294 SITE 2 AD9 6 ILE B 297 OLC B 412 SITE 1 AE1 5 THR B 87 GLY B 89 GLU B 90 OLC B 410 SITE 2 AE1 5 OLC B 411 CRYST1 60.990 81.440 170.140 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016396 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005878 0.00000