HEADER TRANSFERASE 19-MAR-18 5ZJ5 TITLE GUANINE-SPECIFIC ADP-RIBOSYLTRANSFERASE WITH NADH AND GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SCARP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR A3(2); SOURCE 3 ORGANISM_TAXID: 100226; SOURCE 4 STRAIN: ATCC BAA-471 / A3(2) / M145; SOURCE 5 GENE: SCO5461; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR(DE3) KEYWDS ADP-RIBOSYLTRANSFERASE, TOXIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.YOSHIDA,H.TSUGE REVDAT 4 22-NOV-23 5ZJ5 1 REMARK REVDAT 3 19-SEP-18 5ZJ5 1 JRNL REVDAT 2 05-SEP-18 5ZJ5 1 JRNL REVDAT 1 08-AUG-18 5ZJ5 0 JRNL AUTH T.YOSHIDA,H.TSUGE JRNL TITL SUBSTRATE N2ATOM RECOGNITION MECHANISM IN PIERISIN FAMILY JRNL TITL 2 DNA-TARGETING, GUANINE-SPECIFIC ADP-RIBOSYLTRANSFERASE JRNL TITL 3 SCARP. JRNL REF J. BIOL. CHEM. V. 293 13768 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30072382 JRNL DOI 10.1074/JBC.AC118.004412 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.347 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 45602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.386 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.1534 - 3.7762 1.00 3245 149 0.1491 0.1838 REMARK 3 2 3.7762 - 2.9985 1.00 3152 145 0.1802 0.2061 REMARK 3 3 2.9985 - 2.6199 1.00 3147 144 0.1930 0.2039 REMARK 3 4 2.6199 - 2.3805 1.00 3138 144 0.1886 0.2331 REMARK 3 5 2.3805 - 2.2099 1.00 3111 142 0.1762 0.2110 REMARK 3 6 2.2099 - 2.0797 1.00 3132 144 0.1809 0.2284 REMARK 3 7 2.0797 - 1.9756 1.00 3107 143 0.1778 0.2228 REMARK 3 8 1.9756 - 1.8896 1.00 3109 142 0.1659 0.2207 REMARK 3 9 1.8896 - 1.8169 1.00 3088 142 0.1675 0.2230 REMARK 3 10 1.8169 - 1.7542 1.00 3115 143 0.1670 0.1936 REMARK 3 11 1.7542 - 1.6993 1.00 3100 142 0.1765 0.2138 REMARK 3 12 1.6993 - 1.6508 1.00 3133 144 0.1704 0.2196 REMARK 3 13 1.6508 - 1.6073 1.00 3044 139 0.1763 0.1923 REMARK 3 14 1.6073 - 1.5681 0.95 2981 137 0.1921 0.2213 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.147 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.447 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2769 REMARK 3 ANGLE : 1.444 3803 REMARK 3 CHIRALITY : 0.080 388 REMARK 3 PLANARITY : 0.010 486 REMARK 3 DIHEDRAL : 12.383 1898 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A):-123.8368 10.7349 16.9194 REMARK 3 T TENSOR REMARK 3 T11: 0.3437 T22: 0.2383 REMARK 3 T33: 0.3291 T12: -0.0696 REMARK 3 T13: -0.1098 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 3.2097 L22: 7.2637 REMARK 3 L33: 7.5807 L12: -4.1688 REMARK 3 L13: -4.3419 L23: 3.9285 REMARK 3 S TENSOR REMARK 3 S11: 0.0523 S12: 0.4036 S13: -0.8560 REMARK 3 S21: -0.3926 S22: -0.0960 S23: 0.4159 REMARK 3 S31: 0.5628 S32: -0.3726 S33: 0.0030 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A):-128.1737 19.3912 15.0551 REMARK 3 T TENSOR REMARK 3 T11: 0.1464 T22: 0.1848 REMARK 3 T33: 0.2341 T12: -0.0276 REMARK 3 T13: -0.0057 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 2.1842 L22: 2.2277 REMARK 3 L33: 2.7181 L12: -0.2327 REMARK 3 L13: 1.2847 L23: 0.2462 REMARK 3 S TENSOR REMARK 3 S11: 0.0961 S12: 0.0576 S13: -0.3176 REMARK 3 S21: -0.0076 S22: -0.0284 S23: 0.4456 REMARK 3 S31: 0.2032 S32: -0.3947 S33: -0.1011 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A):-119.1162 27.8196 30.5139 REMARK 3 T TENSOR REMARK 3 T11: 0.1056 T22: 0.0937 REMARK 3 T33: 0.1176 T12: 0.0214 REMARK 3 T13: -0.0149 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 4.5064 L22: 6.5117 REMARK 3 L33: 5.2103 L12: -1.6385 REMARK 3 L13: -1.1521 L23: 1.0327 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: -0.2089 S13: 0.0766 REMARK 3 S21: 0.4875 S22: 0.0458 S23: 0.1243 REMARK 3 S31: -0.2770 S32: -0.3358 S33: -0.0277 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A):-133.0564 28.1983 21.1518 REMARK 3 T TENSOR REMARK 3 T11: 0.1576 T22: 0.3169 REMARK 3 T33: 0.2829 T12: 0.0573 REMARK 3 T13: 0.0310 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 3.4359 L22: 1.0151 REMARK 3 L33: 4.7677 L12: -1.7290 REMARK 3 L13: 3.9879 L23: -1.8882 REMARK 3 S TENSOR REMARK 3 S11: 0.0605 S12: -0.1438 S13: -0.3118 REMARK 3 S21: 0.0935 S22: 0.2363 S23: 0.5193 REMARK 3 S31: -0.1779 S32: -0.7162 S33: -0.2625 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A):-127.6692 31.7553 15.1999 REMARK 3 T TENSOR REMARK 3 T11: 0.1304 T22: 0.1958 REMARK 3 T33: 0.1343 T12: 0.0703 REMARK 3 T13: -0.0041 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 5.0754 L22: 4.1698 REMARK 3 L33: 1.0256 L12: -2.9405 REMARK 3 L13: 2.1810 L23: -1.7027 REMARK 3 S TENSOR REMARK 3 S11: 0.0450 S12: 0.0582 S13: 0.0115 REMARK 3 S21: -0.0185 S22: -0.0060 S23: 0.2546 REMARK 3 S31: -0.1831 S32: -0.3478 S33: -0.0414 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A):-114.2440 29.6492 21.5536 REMARK 3 T TENSOR REMARK 3 T11: 0.1331 T22: 0.0688 REMARK 3 T33: 0.1209 T12: 0.0232 REMARK 3 T13: 0.0085 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.1968 L22: 0.4621 REMARK 3 L33: 1.2881 L12: 0.4052 REMARK 3 L13: 0.4885 L23: -0.5197 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: 0.0111 S13: 0.0755 REMARK 3 S21: 0.1588 S22: -0.0090 S23: 0.0552 REMARK 3 S31: -0.1533 S32: -0.0438 S33: -0.0240 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A):-119.8183 27.3191 16.3083 REMARK 3 T TENSOR REMARK 3 T11: 0.1131 T22: 0.0906 REMARK 3 T33: 0.1293 T12: 0.0375 REMARK 3 T13: 0.0184 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.4646 L22: 0.7314 REMARK 3 L33: 3.6630 L12: -0.1566 REMARK 3 L13: 0.8832 L23: -0.4808 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: 0.0885 S13: -0.0125 REMARK 3 S21: 0.0161 S22: 0.0519 S23: 0.0895 REMARK 3 S31: -0.1460 S32: -0.2852 S33: -0.0416 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A):-105.6330 36.3505 28.9940 REMARK 3 T TENSOR REMARK 3 T11: 0.2266 T22: 0.0943 REMARK 3 T33: 0.1597 T12: -0.0079 REMARK 3 T13: -0.0266 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.7942 L22: 5.0466 REMARK 3 L33: 0.9199 L12: -1.9774 REMARK 3 L13: 0.2446 L23: -1.8031 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: -0.0143 S13: 0.2293 REMARK 3 S21: 0.0351 S22: 0.0380 S23: -0.0429 REMARK 3 S31: -0.4215 S32: 0.1332 S33: -0.0300 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A):-114.6023 16.5455 30.6057 REMARK 3 T TENSOR REMARK 3 T11: 0.1366 T22: 0.0624 REMARK 3 T33: 0.1426 T12: 0.0191 REMARK 3 T13: 0.0158 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 3.3280 L22: 0.4883 REMARK 3 L33: 4.9050 L12: 0.0541 REMARK 3 L13: 0.9902 L23: -1.0653 REMARK 3 S TENSOR REMARK 3 S11: 0.1171 S12: -0.0884 S13: -0.0983 REMARK 3 S21: 0.1330 S22: -0.0275 S23: 0.1924 REMARK 3 S31: 0.2941 S32: -0.2514 S33: -0.0981 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -86.3543 33.7497 9.7308 REMARK 3 T TENSOR REMARK 3 T11: 0.2852 T22: 0.4634 REMARK 3 T33: 0.2497 T12: -0.0682 REMARK 3 T13: 0.0549 T23: 0.1035 REMARK 3 L TENSOR REMARK 3 L11: 6.2630 L22: 2.4902 REMARK 3 L33: 6.1998 L12: 0.9756 REMARK 3 L13: -5.2556 L23: 1.1684 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: 0.5853 S13: 0.5358 REMARK 3 S21: -0.0862 S22: -0.1362 S23: -0.3622 REMARK 3 S31: -0.8102 S32: 0.9336 S33: -0.2770 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -88.7188 22.0181 13.9614 REMARK 3 T TENSOR REMARK 3 T11: 0.1653 T22: 0.2749 REMARK 3 T33: 0.1454 T12: 0.0780 REMARK 3 T13: 0.0076 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 2.2706 L22: 0.8573 REMARK 3 L33: 2.0626 L12: -0.4295 REMARK 3 L13: -0.8593 L23: 0.4059 REMARK 3 S TENSOR REMARK 3 S11: 0.0772 S12: 0.3637 S13: 0.0024 REMARK 3 S21: -0.1117 S22: -0.0835 S23: -0.1392 REMARK 3 S31: 0.1764 S32: 0.4460 S33: 0.0135 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -97.9705 23.1826 19.4894 REMARK 3 T TENSOR REMARK 3 T11: 0.1183 T22: 0.0833 REMARK 3 T33: 0.1122 T12: 0.0445 REMARK 3 T13: -0.0070 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.0907 L22: 0.6335 REMARK 3 L33: 3.2728 L12: 0.2948 REMARK 3 L13: -0.2648 L23: -0.0886 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: 0.1726 S13: -0.0596 REMARK 3 S21: -0.0556 S22: -0.0197 S23: -0.0341 REMARK 3 S31: 0.1841 S32: 0.1485 S33: 0.0076 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZJ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300007165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45603 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.568 REMARK 200 RESOLUTION RANGE LOW (A) : 27.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DAZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM ACETATE, PEG 10000, PH 5.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.09850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.02450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.09850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.02450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 43 REMARK 465 PRO A 44 REMARK 465 ALA B 43 REMARK 465 PRO B 44 REMARK 465 TRP B 132 REMARK 465 TYR B 133 REMARK 465 LYS B 134 REMARK 465 SER B 135 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 125 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 68 -170.66 -67.47 REMARK 500 CYS A 76 29.61 -140.38 REMARK 500 ASP A 99 85.21 -150.72 REMARK 500 TRP A 159 3.03 81.26 REMARK 500 VAL A 163 61.55 37.32 REMARK 500 PRO B 68 -173.36 -68.11 REMARK 500 CYS B 76 37.27 -145.20 REMARK 500 ASN B 102 34.47 -145.04 REMARK 500 VAL B 163 63.13 36.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAI A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAI B 301 DBREF 5ZJ5 A 43 204 UNP Q9L1E4 Q9L1E4_STRCO 43 204 DBREF 5ZJ5 B 43 204 UNP Q9L1E4 Q9L1E4_STRCO 43 204 SEQRES 1 A 162 ALA PRO ALA CYS PRO GLN PHE ASP ASP ARG THR LYS ALA SEQRES 2 A 162 ALA ALA ASP ARG GLY VAL ASP VAL ASP ARG ILE THR PRO SEQRES 3 A 162 GLU PRO VAL TRP ARG THR THR CYS GLY THR LEU TYR ARG SEQRES 4 A 162 SER ASP SER ARG GLY PRO GLN VAL VAL PHE GLU GLU GLY SEQRES 5 A 162 PHE HIS ALA LYS ASP VAL GLN ASN GLY GLN TYR ASP VAL SEQRES 6 A 162 GLU LYS TYR VAL LEU VAL ASN GLN PRO SER PRO TYR VAL SEQRES 7 A 162 SER THR SER TYR ASP HIS ASP LEU TYR LYS THR TRP TYR SEQRES 8 A 162 LYS SER GLY TYR ASN TYR TYR VAL ASP ALA PRO GLY GLY SEQRES 9 A 162 ILE ASP VAL ASN LYS THR ILE GLY ASP THR HIS LYS TRP SEQRES 10 A 162 ALA ASP GLN VAL GLU VAL ALA PHE PRO GLY GLY ILE GLN SEQRES 11 A 162 ARG LYS TYR ILE ILE GLY VAL CYS PRO VAL ASP ARG GLN SEQRES 12 A 162 THR LYS THR GLU ILE MET SER ASP CYS GLU SER ASN PRO SEQRES 13 A 162 HIS TYR GLN PRO TRP HIS SEQRES 1 B 162 ALA PRO ALA CYS PRO GLN PHE ASP ASP ARG THR LYS ALA SEQRES 2 B 162 ALA ALA ASP ARG GLY VAL ASP VAL ASP ARG ILE THR PRO SEQRES 3 B 162 GLU PRO VAL TRP ARG THR THR CYS GLY THR LEU TYR ARG SEQRES 4 B 162 SER ASP SER ARG GLY PRO GLN VAL VAL PHE GLU GLU GLY SEQRES 5 B 162 PHE HIS ALA LYS ASP VAL GLN ASN GLY GLN TYR ASP VAL SEQRES 6 B 162 GLU LYS TYR VAL LEU VAL ASN GLN PRO SER PRO TYR VAL SEQRES 7 B 162 SER THR SER TYR ASP HIS ASP LEU TYR LYS THR TRP TYR SEQRES 8 B 162 LYS SER GLY TYR ASN TYR TYR VAL ASP ALA PRO GLY GLY SEQRES 9 B 162 ILE ASP VAL ASN LYS THR ILE GLY ASP THR HIS LYS TRP SEQRES 10 B 162 ALA ASP GLN VAL GLU VAL ALA PHE PRO GLY GLY ILE GLN SEQRES 11 B 162 ARG LYS TYR ILE ILE GLY VAL CYS PRO VAL ASP ARG GLN SEQRES 12 B 162 THR LYS THR GLU ILE MET SER ASP CYS GLU SER ASN PRO SEQRES 13 B 162 HIS TYR GLN PRO TRP HIS HET NAI A 301 44 HET GDP A 302 28 HET NAI B 301 44 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETSYN NAI NADH FORMUL 3 NAI 2(C21 H29 N7 O14 P2) FORMUL 4 GDP C10 H15 N5 O11 P2 FORMUL 6 HOH *225(H2 O) HELIX 1 AA1 ASP A 62 ILE A 66 5 5 HELIX 2 AA2 GLY A 86 GLY A 94 1 9 HELIX 3 AA3 ASP A 106 VAL A 113 1 8 HELIX 4 AA4 ASP A 127 TRP A 132 5 6 HELIX 5 AA5 VAL A 149 GLY A 154 1 6 HELIX 6 AA6 TRP A 159 GLN A 162 5 4 HELIX 7 AA7 GLN A 172 LYS A 174 5 3 HELIX 8 AA8 MET A 191 CYS A 194 5 4 HELIX 9 AA9 ASP B 62 ILE B 66 5 5 HELIX 10 AB1 GLY B 86 GLY B 94 1 9 HELIX 11 AB2 ASP B 106 VAL B 113 1 8 HELIX 12 AB3 ASP B 127 THR B 131 5 5 HELIX 13 AB4 VAL B 149 GLY B 154 1 6 HELIX 14 AB5 TRP B 159 GLN B 162 5 4 HELIX 15 AB6 GLN B 172 LYS B 174 5 3 HELIX 16 AB7 MET B 191 CYS B 194 5 4 SHEET 1 AA1 4 LEU A 79 ASP A 83 0 SHEET 2 AA1 4 TYR A 137 VAL A 141 -1 O VAL A 141 N LEU A 79 SHEET 3 AA1 4 ILE A 176 ASP A 183 -1 O CYS A 180 N ASN A 138 SHEET 4 AA1 4 THR A 188 GLU A 189 -1 O THR A 188 N ASP A 183 SHEET 1 AA2 4 LEU A 79 ASP A 83 0 SHEET 2 AA2 4 TYR A 137 VAL A 141 -1 O VAL A 141 N LEU A 79 SHEET 3 AA2 4 ILE A 176 ASP A 183 -1 O CYS A 180 N ASN A 138 SHEET 4 AA2 4 GLU A 195 SER A 196 -1 O GLU A 195 N VAL A 179 SHEET 1 AA3 3 TYR A 119 SER A 123 0 SHEET 2 AA3 3 GLU A 164 PRO A 168 -1 O PHE A 167 N VAL A 120 SHEET 3 AA3 3 ILE A 147 ASP A 148 -1 N ILE A 147 O ALA A 166 SHEET 1 AA4 4 LEU B 79 ASP B 83 0 SHEET 2 AA4 4 TYR B 137 VAL B 141 -1 O VAL B 141 N LEU B 79 SHEET 3 AA4 4 ILE B 176 ASP B 183 -1 O CYS B 180 N ASN B 138 SHEET 4 AA4 4 THR B 188 GLU B 189 -1 O THR B 188 N ASP B 183 SHEET 1 AA5 4 LEU B 79 ASP B 83 0 SHEET 2 AA5 4 TYR B 137 VAL B 141 -1 O VAL B 141 N LEU B 79 SHEET 3 AA5 4 ILE B 176 ASP B 183 -1 O CYS B 180 N ASN B 138 SHEET 4 AA5 4 GLU B 195 SER B 196 -1 O GLU B 195 N VAL B 179 SHEET 1 AA6 3 TYR B 119 SER B 123 0 SHEET 2 AA6 3 GLU B 164 PRO B 168 -1 O PHE B 167 N VAL B 120 SHEET 3 AA6 3 ILE B 147 ASP B 148 -1 N ILE B 147 O ALA B 166 SSBOND 1 CYS A 46 CYS A 76 1555 1555 2.03 SSBOND 2 CYS A 180 CYS A 194 1555 1555 2.02 SSBOND 3 CYS B 46 CYS B 76 1555 1555 2.06 SSBOND 4 CYS B 180 CYS B 194 1555 1555 2.05 CISPEP 1 THR A 67 PRO A 68 0 -14.96 CISPEP 2 THR B 67 PRO B 68 0 -14.15 SITE 1 AC1 25 ARG A 81 SER A 82 ASP A 83 SER A 84 SITE 2 AC1 25 ARG A 85 HIS A 96 LYS A 98 TYR A 110 SITE 3 AC1 25 ASN A 114 SER A 121 THR A 122 TRP A 132 SITE 4 AC1 25 GLN A 162 GLU A 164 GDP A 302 HOH A 401 SITE 5 AC1 25 HOH A 403 HOH A 404 HOH A 407 HOH A 408 SITE 6 AC1 25 HOH A 430 HOH A 467 HOH A 471 HOH A 483 SITE 7 AC1 25 HOH A 486 SITE 1 AC2 16 VAL A 111 LEU A 112 VAL A 113 ASN A 114 SITE 2 AC2 16 THR A 131 TRP A 132 TYR A 133 LYS A 134 SITE 3 AC2 16 TRP A 159 GLN A 162 NAI A 301 HOH A 402 SITE 4 AC2 16 HOH A 403 HOH A 407 HOH A 417 HOH A 420 SITE 1 AC3 19 ARG B 81 SER B 82 ASP B 83 SER B 84 SITE 2 AC3 19 ARG B 85 HIS B 96 LYS B 98 TYR B 110 SITE 3 AC3 19 VAL B 111 ASN B 114 SER B 121 THR B 122 SITE 4 AC3 19 LEU B 128 GLN B 162 GLU B 164 HOH B 408 SITE 5 AC3 19 HOH B 412 HOH B 416 HOH B 418 CRYST1 116.197 40.049 77.054 90.00 113.97 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008606 0.000000 0.003826 0.00000 SCALE2 0.000000 0.024969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014202 0.00000