HEADER TRANSCRIPTION/DNA 22-MAR-18 5ZJT TITLE STRUCTURE OF ABDB/EXD COMPLEX BOUND TO A 'BLACK14' DNA SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX PROTEIN ABDOMINAL-B; COMPND 3 CHAIN: A, E; COMPND 4 SYNONYM: INFRAABDOMINAL 7,IAB-7,P3,PH189; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HOMEOBOX PROTEIN EXTRADENTICLE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: DPBX; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*GP*TP*CP*AP*TP*TP*TP*AP*TP*CP*AP*TP*GP*C)-3'); COMPND 13 CHAIN: C, H; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'-D(*GP*CP*AP*TP*GP*AP*TP*AP*AP*AP*TP*GP*AP*C)-3'); COMPND 17 CHAIN: D, G; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: ABD-B, CG10291; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 10 ORGANISM_COMMON: FRUIT FLY; SOURCE 11 ORGANISM_TAXID: 7227; SOURCE 12 GENE: EXD, CG8933; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 18 ORGANISM_TAXID: 7227; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 22 ORGANISM_TAXID: 7227 KEYWDS ABDB, EXD, DNA, SHAPE, SPECIFICITY, HOX, HOMEODOMAIN, TRANSCRIPTION, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.ZEISKE,N.BABURAJENDRAN,A.KACZYNSKA,R.MANN,B.HONIG,L.SHAPIRO, AUTHOR 2 A.G.PALMER REVDAT 4 27-MAR-24 5ZJT 1 REMARK REVDAT 3 19-SEP-18 5ZJT 1 AUTHOR JRNL REVDAT 2 12-SEP-18 5ZJT 1 JRNL REVDAT 1 29-AUG-18 5ZJT 0 JRNL AUTH T.ZEISKE,N.BABURAJENDRAN,A.KACZYNSKA,J.BRASCH,A.G.PALMER, JRNL AUTH 2 L.SHAPIRO,B.HONIG,R.S.MANN JRNL TITL INTRINSIC DNA SHAPE ACCOUNTS FOR AFFINITY DIFFERENCES JRNL TITL 2 BETWEEN HOX-COFACTOR BINDING SITES. JRNL REF CELL REP V. 24 2221 2018 JRNL REFN ESSN 2211-1247 JRNL PMID 30157419 JRNL DOI 10.1016/J.CELREP.2018.07.100 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 16909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.5732 - 5.4936 0.94 1278 148 0.2387 0.2607 REMARK 3 2 5.4936 - 4.3607 0.92 1257 135 0.2161 0.2481 REMARK 3 3 4.3607 - 3.8096 0.94 1267 139 0.2061 0.2495 REMARK 3 4 3.8096 - 3.4613 0.93 1287 146 0.2071 0.2467 REMARK 3 5 3.4613 - 3.2132 0.92 1258 144 0.1905 0.2437 REMARK 3 6 3.2132 - 3.0238 0.93 1259 135 0.2268 0.2911 REMARK 3 7 3.0238 - 2.8723 0.94 1288 134 0.2687 0.3473 REMARK 3 8 2.8723 - 2.7473 0.94 1298 148 0.2699 0.2875 REMARK 3 9 2.7473 - 2.6415 0.93 1262 133 0.2631 0.3077 REMARK 3 10 2.6415 - 2.5504 0.93 1238 148 0.2824 0.3374 REMARK 3 11 2.5504 - 2.4706 0.93 1277 140 0.2772 0.3402 REMARK 3 12 2.4706 - 2.4000 0.92 1258 132 0.2947 0.3539 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2942 REMARK 3 ANGLE : 0.468 4188 REMARK 3 CHIRALITY : 0.020 443 REMARK 3 PLANARITY : 0.001 340 REMARK 3 DIHEDRAL : 23.664 1186 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 22.3594 -15.1651-131.3541 REMARK 3 T TENSOR REMARK 3 T11: 0.1143 T22: 0.1048 REMARK 3 T33: 0.2204 T12: 0.0156 REMARK 3 T13: -0.0104 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 1.9095 L22: 1.2338 REMARK 3 L33: 2.9800 L12: 0.4603 REMARK 3 L13: -0.3351 L23: -0.2012 REMARK 3 S TENSOR REMARK 3 S11: -0.0645 S12: 0.3122 S13: -0.1480 REMARK 3 S21: -0.0797 S22: 0.0255 S23: -0.2161 REMARK 3 S31: -0.0650 S32: 0.2927 S33: 0.0362 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 6.1308 -8.1690-107.9387 REMARK 3 T TENSOR REMARK 3 T11: 0.3213 T22: 0.3755 REMARK 3 T33: 0.2183 T12: -0.0057 REMARK 3 T13: 0.0547 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.7250 L22: 2.8797 REMARK 3 L33: 3.4509 L12: -0.2980 REMARK 3 L13: 0.9767 L23: 0.2779 REMARK 3 S TENSOR REMARK 3 S11: 0.1250 S12: -0.1264 S13: -0.0426 REMARK 3 S21: 0.5190 S22: -0.1813 S23: 0.6728 REMARK 3 S31: -0.2443 S32: -0.7508 S33: 0.1101 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 13.6768 -7.8716-120.5942 REMARK 3 T TENSOR REMARK 3 T11: 0.3736 T22: 0.1981 REMARK 3 T33: 0.3766 T12: 0.1233 REMARK 3 T13: -0.0517 T23: 0.0525 REMARK 3 L TENSOR REMARK 3 L11: 0.4529 L22: 0.9694 REMARK 3 L33: 1.5420 L12: 0.5781 REMARK 3 L13: -0.0857 L23: 0.4859 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: 0.1500 S13: 0.2470 REMARK 3 S21: 0.1781 S22: -0.2922 S23: 0.2082 REMARK 3 S31: -0.2731 S32: -0.0832 S33: -0.3187 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 15.4305 -7.6100-118.7888 REMARK 3 T TENSOR REMARK 3 T11: 0.3114 T22: 0.2065 REMARK 3 T33: 0.4493 T12: 0.0305 REMARK 3 T13: -0.0810 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 2.0088 L22: 1.8239 REMARK 3 L33: 2.1351 L12: 0.3488 REMARK 3 L13: -0.6372 L23: 0.6458 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: -0.1207 S13: 0.2264 REMARK 3 S21: 0.3823 S22: -0.2100 S23: -0.2475 REMARK 3 S31: -0.2690 S32: -0.1342 S33: 0.2010 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): -9.2773 4.7237-136.0819 REMARK 3 T TENSOR REMARK 3 T11: 0.1529 T22: 0.1510 REMARK 3 T33: 0.2608 T12: -0.0383 REMARK 3 T13: -0.0198 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.8029 L22: 4.3531 REMARK 3 L33: 3.3443 L12: 0.9000 REMARK 3 L13: -0.3753 L23: 0.0922 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: -0.0848 S13: 0.0130 REMARK 3 S21: 0.2140 S22: 0.0035 S23: 0.4574 REMARK 3 S31: -0.0031 S32: 0.0177 S33: -0.0284 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN G REMARK 3 ORIGIN FOR THE GROUP (A): -4.3474 1.4591-148.8043 REMARK 3 T TENSOR REMARK 3 T11: 0.1544 T22: 0.3853 REMARK 3 T33: 0.2787 T12: -0.0282 REMARK 3 T13: 0.0036 T23: -0.0437 REMARK 3 L TENSOR REMARK 3 L11: 3.9807 L22: 1.1785 REMARK 3 L33: 0.4494 L12: 0.4907 REMARK 3 L13: 0.4404 L23: -0.2821 REMARK 3 S TENSOR REMARK 3 S11: -0.2778 S12: 0.1577 S13: 0.0310 REMARK 3 S21: -0.1769 S22: 0.1832 S23: 0.1778 REMARK 3 S31: 0.1356 S32: 0.3169 S33: -0.0137 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN H REMARK 3 ORIGIN FOR THE GROUP (A): -4.6643 0.7380-151.2029 REMARK 3 T TENSOR REMARK 3 T11: 0.2326 T22: 0.4403 REMARK 3 T33: 0.3620 T12: 0.0002 REMARK 3 T13: 0.0209 T23: -0.0657 REMARK 3 L TENSOR REMARK 3 L11: 1.4361 L22: 2.5516 REMARK 3 L33: 2.0145 L12: -0.4446 REMARK 3 L13: -0.4173 L23: -0.7862 REMARK 3 S TENSOR REMARK 3 S11: -0.4630 S12: 0.6988 S13: -0.2106 REMARK 3 S21: -0.1415 S22: 0.3245 S23: -0.2707 REMARK 3 S31: 0.3464 S32: 0.2622 S33: 0.0819 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZJT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16923 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 63.551 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE PH 5.3, 25% PEG REMARK 280 3350, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 CYS A 4 REMARK 465 THR A 5 REMARK 465 PRO A 6 REMARK 465 ASN A 7 REMARK 465 PRO A 8 REMARK 465 GLY A 9 REMARK 465 GLN A 16 REMARK 465 VAL A 17 REMARK 465 SER A 18 REMARK 465 VAL A 19 REMARK 465 ARG A 20 REMARK 465 SER A 78 REMARK 465 GLN A 79 REMARK 465 ARG A 80 REMARK 465 GLN A 81 REMARK 465 ALA A 82 REMARK 465 ASN A 83 REMARK 465 GLN A 84 REMARK 465 ASP B 1 REMARK 465 ALA B 2 REMARK 465 VAL E 1 REMARK 465 GLY E 2 REMARK 465 PRO E 3 REMARK 465 CYS E 4 REMARK 465 THR E 5 REMARK 465 PRO E 6 REMARK 465 ASN E 7 REMARK 465 PRO E 8 REMARK 465 GLY E 9 REMARK 465 LEU E 10 REMARK 465 HIS E 11 REMARK 465 GLU E 12 REMARK 465 TRP E 13 REMARK 465 THR E 14 REMARK 465 GLY E 15 REMARK 465 GLN E 16 REMARK 465 VAL E 17 REMARK 465 SER E 18 REMARK 465 VAL E 19 REMARK 465 ARG E 20 REMARK 465 GLN E 79 REMARK 465 ARG E 80 REMARK 465 GLN E 81 REMARK 465 ALA E 82 REMARK 465 ASN E 83 REMARK 465 GLN E 84 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 10 CG CD1 CD2 REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 ARG B 3 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 ARG B 7 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 GLU B 69 CG CD OE1 OE2 REMARK 470 LEU B 73 CG CD1 CD2 REMARK 470 LYS E 21 CG CD CE NZ REMARK 470 LYS E 22 CG CD CE NZ REMARK 470 LYS E 24 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 28 45.44 -79.19 REMARK 500 LYS B 66 -79.36 -117.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 108 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH B 109 DISTANCE = 7.09 ANGSTROMS DBREF 5ZJT A 1 84 UNP P09087 ABDB_DROME 369 452 DBREF 5ZJT B 1 74 UNP P40427 EXD_DROME 237 310 DBREF 5ZJT C 1 14 PDB 5ZJT 5ZJT 1 14 DBREF 5ZJT D 1 14 PDB 5ZJT 5ZJT 1 14 DBREF 5ZJT E 1 84 UNP P09087 ABDB_DROME 369 452 DBREF 5ZJT G -1 12 PDB 5ZJT 5ZJT -1 12 DBREF 5ZJT H 3 16 PDB 5ZJT 5ZJT 3 16 SEQRES 1 A 84 VAL GLY PRO CYS THR PRO ASN PRO GLY LEU HIS GLU TRP SEQRES 2 A 84 THR GLY GLN VAL SER VAL ARG LYS LYS ARG LYS PRO TYR SEQRES 3 A 84 SER LYS PHE GLN THR LEU GLU LEU GLU LYS GLU PHE LEU SEQRES 4 A 84 PHE ASN ALA TYR VAL SER LYS GLN LYS ARG TRP GLU LEU SEQRES 5 A 84 ALA ARG ASN LEU GLN LEU THR GLU ARG GLN VAL LYS ILE SEQRES 6 A 84 TRP PHE GLN ASN ARG ARG MET LYS ASN LYS LYS ASN SER SEQRES 7 A 84 GLN ARG GLN ALA ASN GLN SEQRES 1 B 74 ASP ALA ARG ARG LYS ARG ARG ASN PHE SER LYS GLN ALA SEQRES 2 B 74 SER GLU ILE LEU ASN GLU TYR PHE TYR SER HIS LEU SER SEQRES 3 B 74 ASN PRO TYR PRO SER GLU GLU ALA LYS GLU GLU LEU ALA SEQRES 4 B 74 ARG LYS CYS GLY ILE THR VAL SER GLN VAL SER ASN TRP SEQRES 5 B 74 PHE GLY ASN LYS ARG ILE ARG TYR LYS LYS ASN ILE GLY SEQRES 6 B 74 LYS ALA GLN GLU GLU ALA ASN LEU TYR SEQRES 1 C 14 DG DT DC DA DT DT DT DA DT DC DA DT DG SEQRES 2 C 14 DC SEQRES 1 D 14 DG DC DA DT DG DA DT DA DA DA DT DG DA SEQRES 2 D 14 DC SEQRES 1 E 84 VAL GLY PRO CYS THR PRO ASN PRO GLY LEU HIS GLU TRP SEQRES 2 E 84 THR GLY GLN VAL SER VAL ARG LYS LYS ARG LYS PRO TYR SEQRES 3 E 84 SER LYS PHE GLN THR LEU GLU LEU GLU LYS GLU PHE LEU SEQRES 4 E 84 PHE ASN ALA TYR VAL SER LYS GLN LYS ARG TRP GLU LEU SEQRES 5 E 84 ALA ARG ASN LEU GLN LEU THR GLU ARG GLN VAL LYS ILE SEQRES 6 E 84 TRP PHE GLN ASN ARG ARG MET LYS ASN LYS LYS ASN SER SEQRES 7 E 84 GLN ARG GLN ALA ASN GLN SEQRES 1 G 14 DG DC DA DT DG DA DT DA DA DA DT DG DA SEQRES 2 G 14 DC SEQRES 1 H 14 DG DT DC DA DT DT DT DA DT DC DA DT DG SEQRES 2 H 14 DC FORMUL 8 HOH *80(H2 O) HELIX 1 AA1 HIS A 11 GLY A 15 5 5 HELIX 2 AA2 SER A 27 ASN A 41 1 15 HELIX 3 AA3 SER A 45 LEU A 56 1 12 HELIX 4 AA4 THR A 59 ASN A 77 1 19 HELIX 5 AA5 SER B 10 HIS B 24 1 15 HELIX 6 AA6 SER B 31 GLY B 43 1 13 HELIX 7 AA7 THR B 45 ASN B 63 1 19 HELIX 8 AA8 GLU B 69 TYR B 74 5 6 HELIX 9 AA9 SER E 27 ASN E 41 1 15 HELIX 10 AB1 SER E 45 LEU E 56 1 12 HELIX 11 AB2 THR E 59 ASN E 77 1 19 CISPEP 1 LYS A 21 LYS A 22 0 -1.42 CISPEP 2 ILE B 64 GLY B 65 0 -0.61 CRYST1 45.440 45.630 66.860 99.05 100.37 114.18 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022007 0.009881 0.006800 0.00000 SCALE2 0.000000 0.024023 0.006400 0.00000 SCALE3 0.000000 0.000000 0.015735 0.00000