HEADER LYASE 23-MAR-18 5ZKA TITLE CRYSTAL STRUCTURE OF N-ACETYLNEURAMINATE LYASE FROM FUSOBACTERIUM TITLE 2 NUCLEATUM COMPLEXED WITH PYRUVATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLNEURAMINATE LYASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NEU5AC LYASE,N-ACETYLNEURAMINATE PYRUVATE-LYASE,N- COMPND 5 ACETYLNEURAMINIC ACID ALDOLASE,SIALATE LYASE,SIALIC ACID ALDOLASE, COMPND 6 SIALIC ACID LYASE; COMPND 7 EC: 4.1.3.3; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: PYRUVATE COVALENTLY BOUND THROUGH A SCHIFF BASE TO COMPND 10 LYS161; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: N-ACETYLNEURAMINATE LYASE; COMPND 13 CHAIN: B; COMPND 14 FRAGMENT: UNP RESIDUES 1-289; COMPND 15 SYNONYM: NEU5AC LYASE,N-ACETYLNEURAMINATE PYRUVATE-LYASE,N- COMPND 16 ACETYLNEURAMINIC ACID ALDOLASE,SIALATE LYASE,SIALIC ACID ALDOLASE, COMPND 17 SIALIC ACID LYASE; COMPND 18 EC: 4.1.3.3; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FUSOBACTERIUM NUCLEATUM SUBSP. NUCLEATUM ATCC SOURCE 3 25586; SOURCE 4 ORGANISM_TAXID: 190304; SOURCE 5 STRAIN: ATCC 25586; SOURCE 6 GENE: NANA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET300/NT-DEST; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: FUSOBACTERIUM NUCLEATUM SUBSP. NUCLEATUM ATCC SOURCE 14 25586; SOURCE 15 ORGANISM_TAXID: 190304; SOURCE 16 STRAIN: ATCC 25586; SOURCE 17 GENE: NANA; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PET300/NT-DEST KEYWDS N-ACETYLNEURAMINATE LYASE, SIALIC ACID CATABOLISM, TIM-BARREL, SCHIFF KEYWDS 2 BASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.P.KUMAR,H.RAO,V.NAYAK,S.RAMASWAMY REVDAT 2 22-NOV-23 5ZKA 1 REMARK REVDAT 1 05-DEC-18 5ZKA 0 JRNL AUTH J.P.KUMAR,H.RAO,V.NAYAK,S.RAMASWAMY JRNL TITL CRYSTAL STRUCTURES AND KINETICS OF N-ACETYLNEURAMINATE LYASE JRNL TITL 2 FROM FUSOBACTERIUM NUCLEATUM JRNL REF ACTA CRYSTALLOGR F STRUCT V. 74 725 2018 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 30387778 JRNL DOI 10.1107/S2053230X18012992 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.HUYNH,A.AYE,Y.LI,H.YU,H.CAO,V.K.TIWARI,D.W.SHIN,X.CHEN, REMARK 1 AUTH 2 A.J.FISHER REMARK 1 TITL STRUCTURAL BASIS FOR SUBSTRATE SPECIFICITY AND MECHANISM OF REMARK 1 TITL 2 N-ACETYL-D-NEURAMINIC ACID LYASE FROM PASTEURELLA MULTOCIDA. REMARK 1 REF BIOCHEMISTRY V. 52 8570 2013 REMARK 1 REFN ISSN 1520-4995 REMARK 1 PMID 24152047 REMARK 1 DOI 10.1021/BI4011754 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 63183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.210 REMARK 3 FREE R VALUE TEST SET COUNT : 2028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.9180 - 4.2415 0.96 4556 146 0.1473 0.1610 REMARK 3 2 4.2415 - 3.3666 0.97 4397 143 0.1649 0.1778 REMARK 3 3 3.3666 - 2.9411 0.98 4422 150 0.1957 0.2285 REMARK 3 4 2.9411 - 2.6722 0.97 4369 137 0.2106 0.2500 REMARK 3 5 2.6722 - 2.4807 0.98 4394 156 0.1947 0.2403 REMARK 3 6 2.4807 - 2.3344 0.98 4388 141 0.1963 0.2527 REMARK 3 7 2.3344 - 2.2175 0.98 4326 151 0.1934 0.2335 REMARK 3 8 2.2175 - 2.1209 0.97 4308 138 0.2005 0.2461 REMARK 3 9 2.1209 - 2.0393 0.98 4372 144 0.2100 0.2291 REMARK 3 10 2.0393 - 1.9689 0.99 4355 152 0.2172 0.2528 REMARK 3 11 1.9689 - 1.9073 0.98 4365 153 0.2289 0.2815 REMARK 3 12 1.9073 - 1.8528 0.98 4310 145 0.2561 0.3070 REMARK 3 13 1.8528 - 1.8040 0.97 4280 125 0.2954 0.3639 REMARK 3 14 1.8040 - 1.7600 0.98 4313 147 0.3258 0.3769 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID -2 THROUGH 289) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9323 32.3326 41.2824 REMARK 3 T TENSOR REMARK 3 T11: 0.2588 T22: 0.2597 REMARK 3 T33: 0.2330 T12: -0.0285 REMARK 3 T13: 0.0228 T23: 0.0509 REMARK 3 L TENSOR REMARK 3 L11: 1.3084 L22: 0.8897 REMARK 3 L33: 1.0458 L12: -0.4593 REMARK 3 L13: 0.3252 L23: 0.3009 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: -0.2409 S13: -0.0378 REMARK 3 S21: 0.1685 S22: 0.0159 S23: 0.0038 REMARK 3 S31: 0.0662 S32: -0.0564 S33: -0.0187 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID -6 THROUGH 289) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7480 28.2877 3.6539 REMARK 3 T TENSOR REMARK 3 T11: 0.2222 T22: 0.3191 REMARK 3 T33: 0.2293 T12: -0.0663 REMARK 3 T13: -0.0195 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.7683 L22: 0.8653 REMARK 3 L33: 1.2495 L12: -0.7539 REMARK 3 L13: 0.2381 L23: -0.0096 REMARK 3 S TENSOR REMARK 3 S11: -0.0386 S12: 0.4204 S13: 0.1037 REMARK 3 S21: -0.0822 S22: -0.0679 S23: -0.0538 REMARK 3 S31: -0.0985 S32: 0.0864 S33: 0.0972 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZKA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300007195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976251 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63236 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 86.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.84700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4IMC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CHES, PH 9.5 , 10% W/V PEG 3000 REMARK 280 AND 2.85 MM SODIUM PYRUVATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.33800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.28400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.33800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.28400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 ILE A -9 REMARK 465 THR A -8 REMARK 465 SER A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 LYS A -3 REMARK 465 ASN A 290 REMARK 465 TYR B 108 REMARK 465 LYS B 109 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CD CE NZ REMARK 470 ASP A 69 CG OD1 OD2 REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 LYS A 270 CG CD CE NZ REMARK 470 LYS A 271 CD CE NZ REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 ASN B 48 OD1 ND2 REMARK 470 MET B 50 CG SD CE REMARK 470 PHE B 106 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 107 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR B 139 OG1 CG2 REMARK 470 LYS B 267 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 68 -132.47 56.03 REMARK 500 TYR A 107 -73.88 70.74 REMARK 500 ALA B 7 99.36 -69.52 REMARK 500 THR B 45 -157.60 -128.01 REMARK 500 PHE B 49 -70.72 -59.95 REMARK 500 MET B 50 49.71 -98.86 REMARK 500 LYS B 68 -128.24 53.89 REMARK 500 PHE B 106 43.54 -80.74 REMARK 500 THR B 139 28.57 -74.91 REMARK 500 LYS B 267 -170.70 63.10 REMARK 500 PRO B 268 25.58 -79.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 303 REMARK 999 REMARK 999 SEQUENCE REMARK 999 LYS 161 IS MODIFIED TO KPI IN SUBUNIT A. DBREF 5ZKA A 1 290 UNP Q8RDN6 NANA_FUSNN 1 290 DBREF 5ZKA B 1 289 UNP Q8RDN6 NANA_FUSNN 1 289 SEQADV 5ZKA MET A -16 UNP Q8RDN6 INITIATING METHIONINE SEQADV 5ZKA HIS A -15 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA HIS A -14 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA HIS A -13 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA HIS A -12 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA HIS A -11 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA HIS A -10 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA ILE A -9 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA THR A -8 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA SER A -7 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA LEU A -6 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA TYR A -5 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA LYS A -4 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA LYS A -3 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA ALA A -2 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA GLY A -1 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA PHE A 0 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA LEU B -6 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA TYR B -5 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA LYS B -4 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA LYS B -3 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA ALA B -2 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA GLY B -1 UNP Q8RDN6 EXPRESSION TAG SEQADV 5ZKA PHE B 0 UNP Q8RDN6 EXPRESSION TAG SEQRES 1 A 307 MET HIS HIS HIS HIS HIS HIS ILE THR SER LEU TYR LYS SEQRES 2 A 307 LYS ALA GLY PHE MET LYS GLY ILE TYR SER ALA LEU MET SEQRES 3 A 307 VAL PRO TYR ASN GLU ASP GLY SER ILE ASN GLU LYS GLY SEQRES 4 A 307 LEU ARG GLU ILE ILE ARG TYR ASN ILE ASP LYS MET LYS SEQRES 5 A 307 VAL ASP GLY LEU TYR VAL GLY GLY SER THR GLY GLU ASN SEQRES 6 A 307 PHE MET ILE SER THR GLU GLU LYS LYS ARG VAL PHE GLU SEQRES 7 A 307 ILE ALA ILE ASP GLU ALA LYS ASP SER VAL ASN LEU ILE SEQRES 8 A 307 ALA GLN VAL GLY SER ILE ASN LEU ASN GLU ALA VAL GLU SEQRES 9 A 307 LEU GLY LYS TYR VAL THR LYS LEU GLY TYR LYS CYS LEU SEQRES 10 A 307 SER ALA VAL THR PRO PHE TYR TYR LYS PHE ASP PHE SER SEQRES 11 A 307 GLU ILE LYS ASP TYR TYR GLU THR ILE VAL ARG GLU THR SEQRES 12 A 307 GLY ASN TYR MET ILE ILE TYR SER ILE PRO PHE LEU THR SEQRES 13 A 307 GLY VAL ASN MET SER LEU SER GLN PHE GLY GLU LEU PHE SEQRES 14 A 307 GLU ASN GLU LYS ILE ILE GLY VAL KPI PHE THR ALA GLY SEQRES 15 A 307 ASP PHE TYR LEU LEU GLU ARG VAL ARG LYS ALA PHE PRO SEQRES 16 A 307 ASP LYS LEU ILE PHE ALA GLY PHE ASP GLU MET LEU LEU SEQRES 17 A 307 PRO ALA THR VAL LEU GLY VAL ASP GLY ALA ILE GLY SER SEQRES 18 A 307 THR TYR ASN ILE ASN GLY ILE ARG ALA LYS GLN ILE PHE SEQRES 19 A 307 GLU LEU ALA LYS ASN SER LYS ILE ASP GLU ALA LEU LYS SEQRES 20 A 307 ILE GLN HIS THR THR ASN ASP LEU ILE GLU GLY ILE LEU SEQRES 21 A 307 SER ASN GLY LEU TYR GLN THR ILE LYS GLU ILE LEU LYS SEQRES 22 A 307 LEU GLU GLY VAL ASP ALA GLY TYR CYS ARG LYS PRO MET SEQRES 23 A 307 LYS LYS ILE SER GLN LYS GLN ILE GLU PHE ALA LYS GLU SEQRES 24 A 307 LEU HIS LYS LYS PHE LEU LYS ASN SEQRES 1 B 296 LEU TYR LYS LYS ALA GLY PHE MET LYS GLY ILE TYR SER SEQRES 2 B 296 ALA LEU MET VAL PRO TYR ASN GLU ASP GLY SER ILE ASN SEQRES 3 B 296 GLU LYS GLY LEU ARG GLU ILE ILE ARG TYR ASN ILE ASP SEQRES 4 B 296 LYS MET LYS VAL ASP GLY LEU TYR VAL GLY GLY SER THR SEQRES 5 B 296 GLY GLU ASN PHE MET ILE SER THR GLU GLU LYS LYS ARG SEQRES 6 B 296 VAL PHE GLU ILE ALA ILE ASP GLU ALA LYS ASP SER VAL SEQRES 7 B 296 ASN LEU ILE ALA GLN VAL GLY SER ILE ASN LEU ASN GLU SEQRES 8 B 296 ALA VAL GLU LEU GLY LYS TYR VAL THR LYS LEU GLY TYR SEQRES 9 B 296 LYS CYS LEU SER ALA VAL THR PRO PHE TYR TYR LYS PHE SEQRES 10 B 296 ASP PHE SER GLU ILE LYS ASP TYR TYR GLU THR ILE VAL SEQRES 11 B 296 ARG GLU THR GLY ASN TYR MET ILE ILE TYR SER ILE PRO SEQRES 12 B 296 PHE LEU THR GLY VAL ASN MET SER LEU SER GLN PHE GLY SEQRES 13 B 296 GLU LEU PHE GLU ASN GLU LYS ILE ILE GLY VAL LYS PHE SEQRES 14 B 296 THR ALA GLY ASP PHE TYR LEU LEU GLU ARG VAL ARG LYS SEQRES 15 B 296 ALA PHE PRO ASP LYS LEU ILE PHE ALA GLY PHE ASP GLU SEQRES 16 B 296 MET LEU LEU PRO ALA THR VAL LEU GLY VAL ASP GLY ALA SEQRES 17 B 296 ILE GLY SER THR TYR ASN ILE ASN GLY ILE ARG ALA LYS SEQRES 18 B 296 GLN ILE PHE GLU LEU ALA LYS ASN SER LYS ILE ASP GLU SEQRES 19 B 296 ALA LEU LYS ILE GLN HIS THR THR ASN ASP LEU ILE GLU SEQRES 20 B 296 GLY ILE LEU SER ASN GLY LEU TYR GLN THR ILE LYS GLU SEQRES 21 B 296 ILE LEU LYS LEU GLU GLY VAL ASP ALA GLY TYR CYS ARG SEQRES 22 B 296 LYS PRO MET LYS LYS ILE SER GLN LYS GLN ILE GLU PHE SEQRES 23 B 296 ALA LYS GLU LEU HIS LYS LYS PHE LEU LYS MODRES 5ZKA KPI A 161 LYS MODIFIED RESIDUE HET KPI A 161 14 HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO B 301 4 HET EDO B 302 4 HET PGE B 303 10 HETNAM KPI (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE) HETNAM 2 KPI AMINO]HEXANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 KPI C9 H16 N2 O4 FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 PGE C6 H14 O4 FORMUL 9 HOH *166(H2 O) HELIX 1 AA1 ALA A -2 LYS A 2 5 5 HELIX 2 AA2 ASN A 19 LYS A 33 1 15 HELIX 3 AA3 GLY A 43 ILE A 51 5 9 HELIX 4 AA4 SER A 52 LYS A 68 1 17 HELIX 5 AA5 ASN A 81 GLY A 96 1 16 HELIX 6 AA6 ASP A 111 GLY A 127 1 17 HELIX 7 AA7 ILE A 135 GLY A 140 1 6 HELIX 8 AA8 SER A 144 GLU A 153 1 10 HELIX 9 AA9 ASP A 166 PHE A 177 1 12 HELIX 10 AB1 PHE A 186 GLU A 188 5 3 HELIX 11 AB2 MET A 189 LEU A 196 1 8 HELIX 12 AB3 THR A 205 LYS A 221 1 17 HELIX 13 AB4 LYS A 224 GLY A 246 1 23 HELIX 14 AB5 GLY A 246 GLU A 258 1 13 HELIX 15 AB6 SER A 273 LEU A 288 1 16 HELIX 16 AB7 ALA B -2 LYS B 2 5 5 HELIX 17 AB8 ASN B 19 LYS B 33 1 15 HELIX 18 AB9 SER B 52 LYS B 68 1 17 HELIX 19 AC1 ASN B 81 GLY B 96 1 16 HELIX 20 AC2 ASP B 111 GLY B 127 1 17 HELIX 21 AC3 SER B 144 GLU B 153 1 10 HELIX 22 AC4 ASP B 166 PHE B 177 1 12 HELIX 23 AC5 PHE B 186 GLU B 188 5 3 HELIX 24 AC6 MET B 189 LEU B 196 1 8 HELIX 25 AC7 THR B 205 ASN B 222 1 18 HELIX 26 AC8 LYS B 224 GLY B 246 1 23 HELIX 27 AC9 GLY B 246 GLU B 258 1 13 HELIX 28 AD1 SER B 273 LEU B 288 1 16 SHEET 1 AA1 9 GLY A 3 ALA A 7 0 SHEET 2 AA1 9 GLY A 38 VAL A 41 1 O TYR A 40 N SER A 6 SHEET 3 AA1 9 ASN A 72 GLN A 76 1 O GLN A 76 N VAL A 41 SHEET 4 AA1 9 LEU A 100 VAL A 103 1 O SER A 101 N ALA A 75 SHEET 5 AA1 9 MET A 130 SER A 134 1 O TYR A 133 N ALA A 102 SHEET 6 AA1 9 ILE A 157 PHE A 162 1 O KPI A 161 N ILE A 132 SHEET 7 AA1 9 LEU A 181 ALA A 184 1 O PHE A 183 N PHE A 162 SHEET 8 AA1 9 GLY A 200 GLY A 203 1 O ILE A 202 N ALA A 184 SHEET 9 AA1 9 GLY A 3 ALA A 7 1 N TYR A 5 O ALA A 201 SHEET 1 AA2 9 GLY B 3 ALA B 7 0 SHEET 2 AA2 9 GLY B 38 VAL B 41 1 O TYR B 40 N SER B 6 SHEET 3 AA2 9 ASN B 72 GLN B 76 1 O GLN B 76 N VAL B 41 SHEET 4 AA2 9 LEU B 100 ALA B 102 1 O SER B 101 N ALA B 75 SHEET 5 AA2 9 MET B 130 TYR B 133 1 O ILE B 131 N LEU B 100 SHEET 6 AA2 9 ILE B 157 PHE B 162 1 O LYS B 161 N ILE B 132 SHEET 7 AA2 9 LEU B 181 ALA B 184 1 O PHE B 183 N PHE B 162 SHEET 8 AA2 9 GLY B 200 GLY B 203 1 O ILE B 202 N ALA B 184 SHEET 9 AA2 9 GLY B 3 ALA B 7 1 N TYR B 5 O ALA B 201 LINK C VAL A 160 N KPI A 161 1555 1555 1.33 LINK C KPI A 161 N PHE A 162 1555 1555 1.33 CISPEP 1 LYS A 267 PRO A 268 0 7.46 SITE 1 AC1 2 GLY A -1 ALA A -2 SITE 1 AC2 1 LYS A 289 SITE 1 AC3 3 ASP A 187 GLU A 188 HOH A 428 SITE 1 AC4 6 PHE B 0 LYS B 98 CYS B 99 GLN B 274 SITE 2 AC4 6 HOH B 411 HOH B 434 SITE 1 AC5 3 ASP B 187 GLU B 188 HOH B 427 SITE 1 AC6 4 PHE B 152 ALA B 176 PRO B 178 ASP B 179 CRYST1 82.676 86.568 89.987 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012095 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011552 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011113 0.00000