HEADER LIGASE 23-MAR-18 5ZKF TITLE CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF PLASMODIUM VIVAX P43 IN TITLE 2 SPACE GROUP P21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOACYL TRNA SYNTHETASE COMPLEX-INTERACTING COMPND 3 MULTIFUNCTIONAL PROTEIN P43; COMPND 4 CHAIN: B, A, C, D; COMPND 5 FRAGMENT: N-TERMINAL DOMAIN; COMPND 6 SYNONYM: TRNA IMPORT PROTEIN TRIP,PUTATIVE,METHIONINE-TRNA LIGASE, COMPND 7 PUTATIVE; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. VIVAX; SOURCE 4 ORGANISM_TAXID: 5855; SOURCE 5 GENE: PVC01_120068600, PVP01_1264700, PVT01_120069000; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM-11 KEYWDS GST-LIKE DOMAIN, AIMP1, PLASMODIUM, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GUPTA,M.SHARMA,K.HARLOS,Y.MANICKAM,A.SHARMA REVDAT 2 11-MAR-20 5ZKF 1 JRNL REVDAT 1 24-APR-19 5ZKF 0 JRNL AUTH S.GUPTA,J.CHHIBBER-GOEL,M.SHARMA,S.PARVEZ,K.HARLOS,A.SHARMA, JRNL AUTH 2 M.YOGAVEL JRNL TITL CRYSTAL STRUCTURES OF THE TWO DOMAINS THAT CONSTITUTE THE JRNL TITL 2 PLASMODIUM VIVAX P43 PROTEIN. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 76 135 2020 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 32038044 JRNL DOI 10.1107/S2059798319016413 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 16565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1850 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1113 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.4190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5748 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -32.49000 REMARK 3 B22 (A**2) : 3.35000 REMARK 3 B33 (A**2) : 29.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -32.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.353 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 40.205 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5882 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7911 ; 1.160 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 5.527 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 283 ;36.113 ;24.912 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1146 ;16.255 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;23.601 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 884 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4292 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 174 REMARK 3 ORIGIN FOR THE GROUP (A): 18.991 -3.380 36.216 REMARK 3 T TENSOR REMARK 3 T11: 0.0676 T22: 0.0680 REMARK 3 T33: 0.0586 T12: 0.0056 REMARK 3 T13: 0.0581 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.5316 L22: 1.6805 REMARK 3 L33: 0.7325 L12: -0.0311 REMARK 3 L13: 0.5777 L23: 0.2644 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: 0.1656 S13: 0.0744 REMARK 3 S21: 0.0823 S22: -0.0060 S23: 0.0306 REMARK 3 S31: -0.0143 S32: 0.0464 S33: 0.0375 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 43.716 -12.349 44.569 REMARK 3 T TENSOR REMARK 3 T11: 0.0281 T22: 0.0937 REMARK 3 T33: 0.0664 T12: -0.0204 REMARK 3 T13: 0.0030 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.3507 L22: 0.8106 REMARK 3 L33: 0.7548 L12: -0.6045 REMARK 3 L13: -0.1416 L23: -0.0069 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: 0.0014 S13: -0.1222 REMARK 3 S21: -0.0172 S22: -0.0587 S23: -0.0899 REMARK 3 S31: -0.1248 S32: -0.0164 S33: 0.0179 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 173 REMARK 3 ORIGIN FOR THE GROUP (A): 15.373 -17.600 73.006 REMARK 3 T TENSOR REMARK 3 T11: 0.0827 T22: 0.1268 REMARK 3 T33: 0.0156 T12: 0.0030 REMARK 3 T13: 0.0248 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.9052 L22: 0.8971 REMARK 3 L33: 1.1040 L12: 0.6444 REMARK 3 L13: 0.9096 L23: -0.2193 REMARK 3 S TENSOR REMARK 3 S11: -0.0377 S12: 0.1458 S13: 0.0620 REMARK 3 S21: 0.0506 S22: -0.0116 S23: 0.0602 REMARK 3 S31: 0.0652 S32: 0.0746 S33: 0.0493 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 174 REMARK 3 ORIGIN FOR THE GROUP (A): 43.863 -26.533 81.586 REMARK 3 T TENSOR REMARK 3 T11: 0.0296 T22: 0.1005 REMARK 3 T33: 0.0034 T12: 0.0134 REMARK 3 T13: 0.0012 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.4407 L22: 1.2411 REMARK 3 L33: 1.2251 L12: -0.0382 REMARK 3 L13: -0.6519 L23: 0.2574 REMARK 3 S TENSOR REMARK 3 S11: -0.0151 S12: -0.0696 S13: -0.0498 REMARK 3 S21: 0.0700 S22: 0.0193 S23: -0.0190 REMARK 3 S31: 0.0561 S32: 0.0094 S33: -0.0043 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5ZKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18633 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.748 REMARK 200 RESOLUTION RANGE LOW (A) : 45.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CITRATE, 20 % W/V PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.47100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -53.18100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 VAL B 175 REMARK 465 ARG B 176 REMARK 465 ASP B 177 REMARK 465 SER B 178 REMARK 465 LEU B 179 REMARK 465 GLU B 180 REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 LYS A 29 REMARK 465 ASP A 30 REMARK 465 ASP A 31 REMARK 465 GLU A 32 REMARK 465 LYS A 33 REMARK 465 VAL A 34 REMARK 465 VAL A 175 REMARK 465 ARG A 176 REMARK 465 ASP A 177 REMARK 465 SER A 178 REMARK 465 LEU A 179 REMARK 465 GLU A 180 REMARK 465 GLY C -3 REMARK 465 ALA C -2 REMARK 465 MET C -1 REMARK 465 ALA C 0 REMARK 465 GLU C 32 REMARK 465 LYS C 33 REMARK 465 VAL C 34 REMARK 465 GLU C 174 REMARK 465 VAL C 175 REMARK 465 ARG C 176 REMARK 465 ASP C 177 REMARK 465 SER C 178 REMARK 465 LEU C 179 REMARK 465 GLU C 180 REMARK 465 GLY D -3 REMARK 465 ALA D -2 REMARK 465 MET D -1 REMARK 465 ALA D 0 REMARK 465 VAL D 175 REMARK 465 ARG D 176 REMARK 465 ASP D 177 REMARK 465 SER D 178 REMARK 465 LEU D 179 REMARK 465 GLU D 180 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 LYS C 144 CG CD CE NZ REMARK 470 LYS D 50 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 29 -87.83 -127.95 REMARK 500 GLU B 42 -136.20 -129.58 REMARK 500 LYS B 50 -133.10 55.52 REMARK 500 GLU B 56 -176.51 75.07 REMARK 500 ARG B 121 -70.26 -134.26 REMARK 500 GLU A 42 -139.62 -126.96 REMARK 500 LYS A 50 -127.49 54.71 REMARK 500 GLU A 56 -179.38 75.92 REMARK 500 ASP A 95 28.60 -73.18 REMARK 500 ARG A 121 -65.45 -137.86 REMARK 500 GLU C 42 -124.73 -134.47 REMARK 500 LYS C 50 -121.40 53.16 REMARK 500 GLU C 56 -179.63 75.34 REMARK 500 ARG C 121 -68.92 -129.30 REMARK 500 GLU D 42 -140.86 -134.73 REMARK 500 LYS D 50 -118.63 53.50 REMARK 500 GLU D 56 178.50 78.85 REMARK 500 ASP D 95 20.32 -73.45 REMARK 500 ARG D 121 -61.27 -131.56 REMARK 500 REMARK 500 REMARK: NULL DBREF1 5ZKF B 1 180 UNP A0A1G4HHT8_PLAVI DBREF2 5ZKF B A0A1G4HHT8 1 180 DBREF1 5ZKF A 1 180 UNP A0A1G4HHT8_PLAVI DBREF2 5ZKF A A0A1G4HHT8 1 180 DBREF1 5ZKF C 1 180 UNP A0A1G4HHT8_PLAVI DBREF2 5ZKF C A0A1G4HHT8 1 180 DBREF1 5ZKF D 1 180 UNP A0A1G4HHT8_PLAVI DBREF2 5ZKF D A0A1G4HHT8 1 180 SEQADV 5ZKF GLY B -3 UNP A0A1G4HHT EXPRESSION TAG SEQADV 5ZKF ALA B -2 UNP A0A1G4HHT EXPRESSION TAG SEQADV 5ZKF MET B -1 UNP A0A1G4HHT EXPRESSION TAG SEQADV 5ZKF ALA B 0 UNP A0A1G4HHT EXPRESSION TAG SEQADV 5ZKF GLY A -3 UNP A0A1G4HHT EXPRESSION TAG SEQADV 5ZKF ALA A -2 UNP A0A1G4HHT EXPRESSION TAG SEQADV 5ZKF MET A -1 UNP A0A1G4HHT EXPRESSION TAG SEQADV 5ZKF ALA A 0 UNP A0A1G4HHT EXPRESSION TAG SEQADV 5ZKF GLY C -3 UNP A0A1G4HHT EXPRESSION TAG SEQADV 5ZKF ALA C -2 UNP A0A1G4HHT EXPRESSION TAG SEQADV 5ZKF MET C -1 UNP A0A1G4HHT EXPRESSION TAG SEQADV 5ZKF ALA C 0 UNP A0A1G4HHT EXPRESSION TAG SEQADV 5ZKF GLY D -3 UNP A0A1G4HHT EXPRESSION TAG SEQADV 5ZKF ALA D -2 UNP A0A1G4HHT EXPRESSION TAG SEQADV 5ZKF MET D -1 UNP A0A1G4HHT EXPRESSION TAG SEQADV 5ZKF ALA D 0 UNP A0A1G4HHT EXPRESSION TAG SEQRES 1 B 184 GLY ALA MET ALA MET YCM VAL LEU THR LEU VAL GLN ASP SEQRES 2 B 184 ASP VAL LYS SER ASP ILE LEU LYS LEU VAL LEU ASP PHE SEQRES 3 B 184 ILE LYS ALA VAL VAL VAL LYS ASP ASP GLU LYS VAL ALA SEQRES 4 B 184 PHE PRO GLU VAL ARG HIS GLU LYS LYS ILE SER PHE GLN SEQRES 5 B 184 TYR LYS ASP LYS GLN TYR LYS GLU LEU PHE CYS THR LEU SEQRES 6 B 184 TYR ALA ILE ILE ASP ILE TYR ASP CYS TYR ASN GLU LEU SEQRES 7 B 184 PHE ASN GLU ASP GLU GLY LYS VAL SER GLU ASN GLU GLU SEQRES 8 B 184 PHE ILE PHE HIS LEU ALA SER ASP LYS PHE LYS LEU LYS SEQRES 9 B 184 GLN LEU ASP MET LYS HIS LEU ASN ASP LEU LEU CYS GLU SEQRES 10 B 184 LYS SER TYR ILE VAL SER ASN ARG HIS ALA SER ILE VAL SEQRES 11 B 184 ASP ILE PHE TYR PHE CYS SER VAL TYR LYS PRO LEU SER SEQRES 12 B 184 GLU MET PRO ALA LYS GLU ARG VAL GLU ILE SER HIS ILE SEQRES 13 B 184 TYR ARG TRP PHE LEU HIS ILE GLN GLU THR LEU VAL GLY SEQRES 14 B 184 LYS PHE THR THR LEU LYS LYS LEU GLU VAL ARG ASP SER SEQRES 15 B 184 LEU GLU SEQRES 1 A 184 GLY ALA MET ALA MET YCM VAL LEU THR LEU VAL GLN ASP SEQRES 2 A 184 ASP VAL LYS SER ASP ILE LEU LYS LEU VAL LEU ASP PHE SEQRES 3 A 184 ILE LYS ALA VAL VAL VAL LYS ASP ASP GLU LYS VAL ALA SEQRES 4 A 184 PHE PRO GLU VAL ARG HIS GLU LYS LYS ILE SER PHE GLN SEQRES 5 A 184 TYR LYS ASP LYS GLN TYR LYS GLU LEU PHE CYS THR LEU SEQRES 6 A 184 TYR ALA ILE ILE ASP ILE TYR ASP CYS TYR ASN GLU LEU SEQRES 7 A 184 PHE ASN GLU ASP GLU GLY LYS VAL SER GLU ASN GLU GLU SEQRES 8 A 184 PHE ILE PHE HIS LEU ALA SER ASP LYS PHE LYS LEU LYS SEQRES 9 A 184 GLN LEU ASP MET LYS HIS LEU ASN ASP LEU LEU CYS GLU SEQRES 10 A 184 LYS SER TYR ILE VAL SER ASN ARG HIS ALA SER ILE VAL SEQRES 11 A 184 ASP ILE PHE TYR PHE CYS SER VAL TYR LYS PRO LEU SER SEQRES 12 A 184 GLU MET PRO ALA LYS GLU ARG VAL GLU ILE SER HIS ILE SEQRES 13 A 184 TYR ARG TRP PHE LEU HIS ILE GLN GLU THR LEU VAL GLY SEQRES 14 A 184 LYS PHE THR THR LEU LYS LYS LEU GLU VAL ARG ASP SER SEQRES 15 A 184 LEU GLU SEQRES 1 C 184 GLY ALA MET ALA MET YCM VAL LEU THR LEU VAL GLN ASP SEQRES 2 C 184 ASP VAL LYS SER ASP ILE LEU LYS LEU VAL LEU ASP PHE SEQRES 3 C 184 ILE LYS ALA VAL VAL VAL LYS ASP ASP GLU LYS VAL ALA SEQRES 4 C 184 PHE PRO GLU VAL ARG HIS GLU LYS LYS ILE SER PHE GLN SEQRES 5 C 184 TYR LYS ASP LYS GLN TYR LYS GLU LEU PHE CYS THR LEU SEQRES 6 C 184 TYR ALA ILE ILE ASP ILE TYR ASP CYS TYR ASN GLU LEU SEQRES 7 C 184 PHE ASN GLU ASP GLU GLY LYS VAL SER GLU ASN GLU GLU SEQRES 8 C 184 PHE ILE PHE HIS LEU ALA SER ASP LYS PHE LYS LEU LYS SEQRES 9 C 184 GLN LEU ASP MET LYS HIS LEU ASN ASP LEU LEU CYS GLU SEQRES 10 C 184 LYS SER TYR ILE VAL SER ASN ARG HIS ALA SER ILE VAL SEQRES 11 C 184 ASP ILE PHE TYR PHE CYS SER VAL TYR LYS PRO LEU SER SEQRES 12 C 184 GLU MET PRO ALA LYS GLU ARG VAL GLU ILE SER HIS ILE SEQRES 13 C 184 TYR ARG TRP PHE LEU HIS ILE GLN GLU THR LEU VAL GLY SEQRES 14 C 184 LYS PHE THR THR LEU LYS LYS LEU GLU VAL ARG ASP SER SEQRES 15 C 184 LEU GLU SEQRES 1 D 184 GLY ALA MET ALA MET YCM VAL LEU THR LEU VAL GLN ASP SEQRES 2 D 184 ASP VAL LYS SER ASP ILE LEU LYS LEU VAL LEU ASP PHE SEQRES 3 D 184 ILE LYS ALA VAL VAL VAL LYS ASP ASP GLU LYS VAL ALA SEQRES 4 D 184 PHE PRO GLU VAL ARG HIS GLU LYS LYS ILE SER PHE GLN SEQRES 5 D 184 TYR LYS ASP LYS GLN TYR LYS GLU LEU PHE CYS THR LEU SEQRES 6 D 184 TYR ALA ILE ILE ASP ILE TYR ASP CYS TYR ASN GLU LEU SEQRES 7 D 184 PHE ASN GLU ASP GLU GLY LYS VAL SER GLU ASN GLU GLU SEQRES 8 D 184 PHE ILE PHE HIS LEU ALA SER ASP LYS PHE LYS LEU LYS SEQRES 9 D 184 GLN LEU ASP MET LYS HIS LEU ASN ASP LEU LEU CYS GLU SEQRES 10 D 184 LYS SER TYR ILE VAL SER ASN ARG HIS ALA SER ILE VAL SEQRES 11 D 184 ASP ILE PHE TYR PHE CYS SER VAL TYR LYS PRO LEU SER SEQRES 12 D 184 GLU MET PRO ALA LYS GLU ARG VAL GLU ILE SER HIS ILE SEQRES 13 D 184 TYR ARG TRP PHE LEU HIS ILE GLN GLU THR LEU VAL GLY SEQRES 14 D 184 LYS PHE THR THR LEU LYS LYS LEU GLU VAL ARG ASP SER SEQRES 15 D 184 LEU GLU MODRES 5ZKF YCM B 2 CYS MODIFIED RESIDUE MODRES 5ZKF YCM A 2 CYS MODIFIED RESIDUE MODRES 5ZKF YCM C 2 CYS MODIFIED RESIDUE MODRES 5ZKF YCM D 2 CYS MODIFIED RESIDUE HET YCM B 2 10 HET YCM A 2 10 HET YCM C 2 10 HET YCM D 2 10 HETNAM YCM S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE HETSYN YCM CYSTEINE-S-ACETAMIDE FORMUL 1 YCM 4(C5 H10 N2 O3 S) FORMUL 5 HOH *30(H2 O) HELIX 1 AA1 ASP B 10 VAL B 27 1 18 HELIX 2 AA2 GLU B 56 TYR B 68 1 13 HELIX 3 AA3 CYS B 70 ASN B 76 1 7 HELIX 4 AA4 GLU B 77 GLY B 80 5 4 HELIX 5 AA5 LYS B 81 ASP B 95 1 15 HELIX 6 AA6 LYS B 100 LEU B 111 1 12 HELIX 7 AA7 SER B 124 GLU B 140 1 17 HELIX 8 AA8 PRO B 142 VAL B 147 1 6 HELIX 9 AA9 ILE B 149 LEU B 163 1 15 HELIX 10 AB1 ASP A 10 VAL A 27 1 18 HELIX 11 AB2 GLU A 56 ASP A 69 1 14 HELIX 12 AB3 CYS A 70 ASN A 76 1 7 HELIX 13 AB4 LYS A 81 ASP A 95 1 15 HELIX 14 AB5 LYS A 100 LEU A 111 1 12 HELIX 15 AB6 SER A 124 GLU A 140 1 17 HELIX 16 AB7 PRO A 142 GLU A 148 1 7 HELIX 17 AB8 ILE A 149 LEU A 163 1 15 HELIX 18 AB9 ASP C 10 VAL C 27 1 18 HELIX 19 AC1 GLU C 56 ASP C 69 1 14 HELIX 20 AC2 CYS C 70 ASN C 76 1 7 HELIX 21 AC3 GLU C 77 GLY C 80 5 4 HELIX 22 AC4 LYS C 81 ASP C 95 1 15 HELIX 23 AC5 LYS C 100 LYS C 114 1 15 HELIX 24 AC6 SER C 124 MET C 141 1 18 HELIX 25 AC7 PRO C 142 VAL C 147 1 6 HELIX 26 AC8 ILE C 149 VAL C 164 1 16 HELIX 27 AC9 ASP D 10 VAL D 27 1 18 HELIX 28 AD1 GLU D 56 ASP D 69 1 14 HELIX 29 AD2 CYS D 70 ASN D 76 1 7 HELIX 30 AD3 GLU D 77 GLY D 80 5 4 HELIX 31 AD4 LYS D 81 ASP D 95 1 15 HELIX 32 AD5 LYS D 100 LYS D 114 1 15 HELIX 33 AD6 SER D 124 GLU D 140 1 17 HELIX 34 AD7 PRO D 142 VAL D 147 1 6 HELIX 35 AD8 ILE D 149 VAL D 164 1 16 SHEET 1 AA1 4 GLU B 38 HIS B 41 0 SHEET 2 AA1 4 YCM B 2 LEU B 6 1 N LEU B 4 O GLU B 38 SHEET 3 AA1 4 SER B 46 TYR B 49 -1 O GLN B 48 N VAL B 3 SHEET 4 AA1 4 LYS B 52 LYS B 55 -1 O TYR B 54 N PHE B 47 SHEET 1 AA2 4 GLU A 38 GLU A 42 0 SHEET 2 AA2 4 VAL A 3 VAL A 7 1 N LEU A 6 O ARG A 40 SHEET 3 AA2 4 SER A 46 TYR A 49 -1 O SER A 46 N THR A 5 SHEET 4 AA2 4 LYS A 52 LYS A 55 -1 O LYS A 52 N TYR A 49 SHEET 1 AA3 4 GLU C 38 GLU C 42 0 SHEET 2 AA3 4 VAL C 3 VAL C 7 1 N LEU C 6 O GLU C 42 SHEET 3 AA3 4 SER C 46 TYR C 49 -1 O SER C 46 N THR C 5 SHEET 4 AA3 4 LYS C 52 LYS C 55 -1 O LYS C 52 N TYR C 49 SHEET 1 AA4 4 GLU D 38 HIS D 41 0 SHEET 2 AA4 4 YCM D 2 LEU D 6 1 N LEU D 4 O GLU D 38 SHEET 3 AA4 4 SER D 46 TYR D 49 -1 O GLN D 48 N VAL D 3 SHEET 4 AA4 4 LYS D 52 LYS D 55 -1 O LYS D 52 N TYR D 49 LINK C MET B 1 N YCM B 2 1555 1555 1.33 LINK C YCM B 2 N VAL B 3 1555 1555 1.33 LINK C MET A 1 N YCM A 2 1555 1555 1.33 LINK C YCM A 2 N VAL A 3 1555 1555 1.32 LINK C MET C 1 N YCM C 2 1555 1555 1.31 LINK C YCM C 2 N VAL C 3 1555 1555 1.31 LINK C MET D 1 N YCM D 2 1555 1555 1.34 LINK C YCM D 2 N VAL D 3 1555 1555 1.34 CRYST1 53.181 86.942 78.411 90.00 91.81 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018804 0.000000 0.000595 0.00000 SCALE2 0.000000 0.011502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012760 0.00000