HEADER HYDROLASE/RNA/DNA 24-MAR-18 5ZKJ TITLE HUMAN EXOG-H140A IN COMPLEX WITH RNA/DNA HYBRID DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEASE EXOG, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ENDONUCLEASE G-LIKE 1,ENDO G-LIKE 1; COMPND 5 EC: 3.1.30.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'-R(P*CP*GP*GP*GP*AP*UP*GP*UP*CP*AP*CP*G)-3'); COMPND 10 CHAIN: C, E; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*CP*GP*TP*GP*AP*CP*AP*TP*CP*CP*CP*G)-3'); COMPND 14 CHAIN: D, F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EXOG, ENDOGL1, ENDOGL2, ENGL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS ENZYME-SUBSTRATE COMPLEX, MITOCHONDRIAL EXONUCLEASE, HYDROLASE-RNA- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.C.WU,J.L.J.LIN,H.S.YUAN REVDAT 4 22-NOV-23 5ZKJ 1 LINK REVDAT 3 19-JUN-19 5ZKJ 1 JRNL REVDAT 2 17-APR-19 5ZKJ 1 JRNL REVDAT 1 03-APR-19 5ZKJ 0 JRNL AUTH C.C.WU,J.L.J.LIN,H.F.YANG-YEN,H.S.YUAN JRNL TITL A UNIQUE EXONUCLEASE EXOG CLEAVES BETWEEN RNA AND DNA IN JRNL TITL 2 MITOCHONDRIAL DNA REPLICATION. JRNL REF NUCLEIC ACIDS RES. V. 47 5405 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 30949702 JRNL DOI 10.1093/NAR/GKZ241 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 25986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4353 - 6.0106 0.89 2311 122 0.1584 0.1714 REMARK 3 2 6.0106 - 4.7782 0.93 2415 129 0.1566 0.2142 REMARK 3 3 4.7782 - 4.1763 0.93 2409 134 0.1497 0.2123 REMARK 3 4 4.1763 - 3.7954 0.95 2397 187 0.1716 0.2384 REMARK 3 5 3.7954 - 3.5239 0.97 2518 119 0.1927 0.2353 REMARK 3 6 3.5239 - 3.3165 0.97 2520 114 0.2088 0.2421 REMARK 3 7 3.3165 - 3.1506 0.98 2550 129 0.2241 0.2928 REMARK 3 8 3.1506 - 3.0136 0.99 2572 131 0.2363 0.3251 REMARK 3 9 3.0136 - 2.8977 0.98 2550 126 0.2635 0.3099 REMARK 3 10 2.8977 - 2.7978 0.94 2404 149 0.2894 0.3274 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6059 REMARK 3 ANGLE : 0.487 8419 REMARK 3 CHIRALITY : 0.040 935 REMARK 3 PLANARITY : 0.003 921 REMARK 3 DIHEDRAL : 13.770 3523 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZKJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300007178. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : LN2-COOLED, FIXED-EXIT DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25994 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.798 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.46800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.747 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5T4I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 22% PEG 400, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 83.78800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.37502 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.14600 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 83.78800 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 48.37502 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.14600 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 83.78800 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 48.37502 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.14600 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 96.75005 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 70.29200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 96.75005 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 70.29200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 96.75005 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 70.29200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -122.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 HIS A 28 REMARK 465 HIS A 29 REMARK 465 HIS A 30 REMARK 465 SER A 31 REMARK 465 SER A 32 REMARK 465 GLY A 33 REMARK 465 LEU A 34 REMARK 465 VAL A 35 REMARK 465 PRO A 36 REMARK 465 ARG A 37 REMARK 465 GLY A 38 REMARK 465 SER A 39 REMARK 465 HIS A 40 REMARK 465 MET A 41 REMARK 465 GLN A 42 REMARK 465 GLY A 43 REMARK 465 ALA A 44 REMARK 465 GLU A 45 REMARK 465 GLY A 46 REMARK 465 ALA A 47 REMARK 465 LEU A 48 REMARK 465 THR A 49 REMARK 465 GLY A 50 REMARK 465 LYS A 51 REMARK 465 GLN A 52 REMARK 465 PRO A 53 REMARK 465 ASP A 54 REMARK 465 GLY A 55 REMARK 465 GLU A 353 REMARK 465 LEU A 354 REMARK 465 LYS A 355 REMARK 465 ALA A 356 REMARK 465 LYS A 357 REMARK 465 GLU A 358 REMARK 465 GLN A 359 REMARK 465 SER A 360 REMARK 465 GLY A 361 REMARK 465 THR A 362 REMARK 465 GLN A 363 REMARK 465 ILE A 364 REMARK 465 ARG A 365 REMARK 465 LYS A 366 REMARK 465 PRO A 367 REMARK 465 SER A 368 REMARK 465 MET B 21 REMARK 465 GLY B 22 REMARK 465 SER B 23 REMARK 465 SER B 24 REMARK 465 HIS B 25 REMARK 465 HIS B 26 REMARK 465 HIS B 27 REMARK 465 HIS B 28 REMARK 465 HIS B 29 REMARK 465 HIS B 30 REMARK 465 SER B 31 REMARK 465 SER B 32 REMARK 465 GLY B 33 REMARK 465 LEU B 34 REMARK 465 VAL B 35 REMARK 465 PRO B 36 REMARK 465 ARG B 37 REMARK 465 GLY B 38 REMARK 465 SER B 39 REMARK 465 HIS B 40 REMARK 465 MET B 41 REMARK 465 GLN B 42 REMARK 465 GLY B 43 REMARK 465 ALA B 44 REMARK 465 GLU B 45 REMARK 465 GLY B 46 REMARK 465 ALA B 47 REMARK 465 LEU B 48 REMARK 465 THR B 49 REMARK 465 GLY B 50 REMARK 465 LYS B 51 REMARK 465 GLN B 52 REMARK 465 PRO B 53 REMARK 465 ASP B 54 REMARK 465 GLY B 55 REMARK 465 GLN B 359 REMARK 465 SER B 360 REMARK 465 GLY B 361 REMARK 465 THR B 362 REMARK 465 GLN B 363 REMARK 465 ILE B 364 REMARK 465 ARG B 365 REMARK 465 LYS B 366 REMARK 465 PRO B 367 REMARK 465 SER B 368 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 C C 1 P C C 1 OP3 -0.127 REMARK 500 C E 1 P C E 1 OP3 -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 79 29.59 -154.32 REMARK 500 HIS A 80 144.91 -173.49 REMARK 500 ILE A 256 -59.41 -127.00 REMARK 500 PHE A 281 74.09 47.16 REMARK 500 SER A 288 177.00 -58.75 REMARK 500 GLU A 336 -5.07 78.87 REMARK 500 PHE B 281 73.37 52.04 REMARK 500 SER B 288 -170.05 -69.49 REMARK 500 ASP B 297 -159.15 -112.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 171 OD1 REMARK 620 2 HOH A 507 O 168.2 REMARK 620 3 HOH A 508 O 101.1 90.5 REMARK 620 4 G E 2 O3' 78.8 91.1 159.7 REMARK 620 5 G E 3 OP1 72.9 107.2 100.9 59.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 171 OD1 REMARK 620 2 HOH B 508 O 78.3 REMARK 620 3 HOH B 513 O 173.8 95.5 REMARK 620 4 HOH B 522 O 101.4 98.1 80.3 REMARK 620 5 G C 2 O3' 84.1 99.2 96.0 162.6 REMARK 620 6 G C 3 OP1 94.5 159.9 90.9 101.7 61.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 101 DBREF 5ZKJ A 42 368 UNP Q9Y2C4 EXOG_HUMAN 42 368 DBREF 5ZKJ B 42 368 UNP Q9Y2C4 EXOG_HUMAN 42 368 DBREF 5ZKJ C 1 12 PDB 5ZKJ 5ZKJ 1 12 DBREF 5ZKJ D 1 12 PDB 5ZKJ 5ZKJ 1 12 DBREF 5ZKJ E 1 12 PDB 5ZKJ 5ZKJ 1 12 DBREF 5ZKJ F 1 12 PDB 5ZKJ 5ZKJ 1 12 SEQADV 5ZKJ MET A 21 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ GLY A 22 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ SER A 23 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ SER A 24 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ HIS A 25 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ HIS A 26 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ HIS A 27 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ HIS A 28 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ HIS A 29 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ HIS A 30 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ SER A 31 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ SER A 32 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ GLY A 33 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ LEU A 34 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ VAL A 35 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ PRO A 36 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ ARG A 37 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ GLY A 38 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ SER A 39 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ HIS A 40 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ MET A 41 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ ALA A 140 UNP Q9Y2C4 HIS 140 ENGINEERED MUTATION SEQADV 5ZKJ MET B 21 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ GLY B 22 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ SER B 23 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ SER B 24 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ HIS B 25 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ HIS B 26 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ HIS B 27 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ HIS B 28 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ HIS B 29 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ HIS B 30 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ SER B 31 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ SER B 32 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ GLY B 33 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ LEU B 34 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ VAL B 35 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ PRO B 36 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ ARG B 37 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ GLY B 38 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ SER B 39 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ HIS B 40 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ MET B 41 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5ZKJ ALA B 140 UNP Q9Y2C4 HIS 140 ENGINEERED MUTATION SEQRES 1 A 348 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 348 LEU VAL PRO ARG GLY SER HIS MET GLN GLY ALA GLU GLY SEQRES 3 A 348 ALA LEU THR GLY LYS GLN PRO ASP GLY SER ALA GLU LYS SEQRES 4 A 348 ALA VAL LEU GLU GLN PHE GLY PHE PRO LEU THR GLY THR SEQRES 5 A 348 GLU ALA ARG CYS TYR THR ASN HIS ALA LEU SER TYR ASP SEQRES 6 A 348 GLN ALA LYS ARG VAL PRO ARG TRP VAL LEU GLU HIS ILE SEQRES 7 A 348 SER LYS SER LYS ILE MET GLY ASP ALA ASP ARG LYS HIS SEQRES 8 A 348 CYS LYS PHE LYS PRO ASP PRO ASN ILE PRO PRO THR PHE SEQRES 9 A 348 SER ALA PHE ASN GLU ASP TYR VAL GLY SER GLY TRP SER SEQRES 10 A 348 ARG GLY ALA MET ALA PRO ALA GLY ASN ASN LYS PHE SER SEQRES 11 A 348 SER LYS ALA MET ALA GLU THR PHE TYR LEU SER ASN ILE SEQRES 12 A 348 VAL PRO GLN ASP PHE ASP ASN ASN SER GLY TYR TRP ASN SEQRES 13 A 348 ARG ILE GLU MET TYR CYS ARG GLU LEU THR GLU ARG PHE SEQRES 14 A 348 GLU ASP VAL TRP VAL VAL SER GLY PRO LEU THR LEU PRO SEQRES 15 A 348 GLN THR ARG GLY ASP GLY LYS LYS ILE VAL SER TYR GLN SEQRES 16 A 348 VAL ILE GLY GLU ASP ASN VAL ALA VAL PRO SER HIS LEU SEQRES 17 A 348 TYR LYS VAL ILE LEU ALA ARG ARG SER SER VAL SER THR SEQRES 18 A 348 GLU PRO LEU ALA LEU GLY ALA PHE VAL VAL PRO ASN GLU SEQRES 19 A 348 ALA ILE GLY PHE GLN PRO GLN LEU THR GLU PHE GLN VAL SEQRES 20 A 348 SER LEU GLN ASP LEU GLU LYS LEU SER GLY LEU VAL PHE SEQRES 21 A 348 PHE PRO HIS LEU ASP ARG THR SER ASP ILE ARG ASN ILE SEQRES 22 A 348 CYS SER VAL ASP THR CYS LYS LEU LEU ASP PHE GLN GLU SEQRES 23 A 348 PHE THR LEU TYR LEU SER THR ARG LYS ILE GLU GLY ALA SEQRES 24 A 348 ARG SER VAL LEU ARG LEU GLU LYS ILE MET GLU ASN LEU SEQRES 25 A 348 LYS ASN ALA GLU ILE GLU PRO ASP ASP TYR PHE MET SER SEQRES 26 A 348 ARG TYR GLU LYS LYS LEU GLU GLU LEU LYS ALA LYS GLU SEQRES 27 A 348 GLN SER GLY THR GLN ILE ARG LYS PRO SER SEQRES 1 B 348 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 348 LEU VAL PRO ARG GLY SER HIS MET GLN GLY ALA GLU GLY SEQRES 3 B 348 ALA LEU THR GLY LYS GLN PRO ASP GLY SER ALA GLU LYS SEQRES 4 B 348 ALA VAL LEU GLU GLN PHE GLY PHE PRO LEU THR GLY THR SEQRES 5 B 348 GLU ALA ARG CYS TYR THR ASN HIS ALA LEU SER TYR ASP SEQRES 6 B 348 GLN ALA LYS ARG VAL PRO ARG TRP VAL LEU GLU HIS ILE SEQRES 7 B 348 SER LYS SER LYS ILE MET GLY ASP ALA ASP ARG LYS HIS SEQRES 8 B 348 CYS LYS PHE LYS PRO ASP PRO ASN ILE PRO PRO THR PHE SEQRES 9 B 348 SER ALA PHE ASN GLU ASP TYR VAL GLY SER GLY TRP SER SEQRES 10 B 348 ARG GLY ALA MET ALA PRO ALA GLY ASN ASN LYS PHE SER SEQRES 11 B 348 SER LYS ALA MET ALA GLU THR PHE TYR LEU SER ASN ILE SEQRES 12 B 348 VAL PRO GLN ASP PHE ASP ASN ASN SER GLY TYR TRP ASN SEQRES 13 B 348 ARG ILE GLU MET TYR CYS ARG GLU LEU THR GLU ARG PHE SEQRES 14 B 348 GLU ASP VAL TRP VAL VAL SER GLY PRO LEU THR LEU PRO SEQRES 15 B 348 GLN THR ARG GLY ASP GLY LYS LYS ILE VAL SER TYR GLN SEQRES 16 B 348 VAL ILE GLY GLU ASP ASN VAL ALA VAL PRO SER HIS LEU SEQRES 17 B 348 TYR LYS VAL ILE LEU ALA ARG ARG SER SER VAL SER THR SEQRES 18 B 348 GLU PRO LEU ALA LEU GLY ALA PHE VAL VAL PRO ASN GLU SEQRES 19 B 348 ALA ILE GLY PHE GLN PRO GLN LEU THR GLU PHE GLN VAL SEQRES 20 B 348 SER LEU GLN ASP LEU GLU LYS LEU SER GLY LEU VAL PHE SEQRES 21 B 348 PHE PRO HIS LEU ASP ARG THR SER ASP ILE ARG ASN ILE SEQRES 22 B 348 CYS SER VAL ASP THR CYS LYS LEU LEU ASP PHE GLN GLU SEQRES 23 B 348 PHE THR LEU TYR LEU SER THR ARG LYS ILE GLU GLY ALA SEQRES 24 B 348 ARG SER VAL LEU ARG LEU GLU LYS ILE MET GLU ASN LEU SEQRES 25 B 348 LYS ASN ALA GLU ILE GLU PRO ASP ASP TYR PHE MET SER SEQRES 26 B 348 ARG TYR GLU LYS LYS LEU GLU GLU LEU LYS ALA LYS GLU SEQRES 27 B 348 GLN SER GLY THR GLN ILE ARG LYS PRO SER SEQRES 1 C 12 C G G G A U G U C A C G SEQRES 1 D 12 DC DG DT DG DA DC DA DT DC DC DC DG SEQRES 1 E 12 C G G G A U G U C A C G SEQRES 1 F 12 DC DG DT DG DA DC DA DT DC DC DC DG HET MG A 401 1 HET CL B 401 1 HET MG C 101 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 7 MG 2(MG 2+) FORMUL 8 CL CL 1- FORMUL 10 HOH *50(H2 O) HELIX 1 AA1 SER A 56 GLU A 63 1 8 HELIX 2 AA2 PHE A 127 VAL A 132 1 6 HELIX 3 AA3 PRO A 143 LYS A 148 5 6 HELIX 4 AA4 SER A 150 PHE A 158 1 9 HELIX 5 AA5 TYR A 159 SER A 161 5 3 HELIX 6 AA6 ASP A 167 GLY A 173 1 7 HELIX 7 AA7 GLY A 173 THR A 186 1 14 HELIX 8 AA8 GLN A 261 GLU A 264 5 4 HELIX 9 AA9 SER A 268 GLY A 277 1 10 HELIX 10 AB1 ASP A 303 GLY A 318 1 16 HELIX 11 AB2 SER A 321 ALA A 335 1 15 HELIX 12 AB3 ASP A 340 LYS A 349 1 10 HELIX 13 AB4 ALA B 57 VAL B 61 1 5 HELIX 14 AB5 LEU B 62 GLY B 66 5 5 HELIX 15 AB6 ASP B 108 CYS B 112 5 5 HELIX 16 AB7 PRO B 121 SER B 125 5 5 HELIX 17 AB8 PHE B 127 VAL B 132 1 6 HELIX 18 AB9 PRO B 143 LYS B 148 5 6 HELIX 19 AC1 SER B 150 THR B 157 1 8 HELIX 20 AC2 PHE B 158 SER B 161 5 4 HELIX 21 AC3 ASP B 167 GLY B 173 1 7 HELIX 22 AC4 GLY B 173 THR B 186 1 14 HELIX 23 AC5 GLN B 261 GLU B 264 5 4 HELIX 24 AC6 SER B 268 GLY B 277 1 10 HELIX 25 AC7 ILE B 293 ASP B 297 1 5 HELIX 26 AC8 ASP B 303 ALA B 319 1 17 HELIX 27 AC9 SER B 321 ALA B 335 1 15 HELIX 28 AD1 ASP B 340 GLU B 358 1 19 SHEET 1 AA1 7 ALA A 74 CYS A 76 0 SHEET 2 AA1 7 ALA A 81 ASP A 85 -1 O LEU A 82 N ARG A 75 SHEET 3 AA1 7 VAL A 90 ILE A 98 -1 O ARG A 92 N SER A 83 SHEET 4 AA1 7 ASP A 191 LEU A 199 -1 O VAL A 192 N ILE A 98 SHEET 5 AA1 7 HIS A 227 ARG A 235 -1 O LEU A 233 N TRP A 193 SHEET 6 AA1 7 LEU A 244 PRO A 252 -1 O GLY A 247 N ILE A 232 SHEET 7 AA1 7 GLN A 266 VAL A 267 -1 O VAL A 267 N ALA A 248 SHEET 1 AA2 7 ALA A 74 CYS A 76 0 SHEET 2 AA2 7 ALA A 81 ASP A 85 -1 O LEU A 82 N ARG A 75 SHEET 3 AA2 7 VAL A 90 ILE A 98 -1 O ARG A 92 N SER A 83 SHEET 4 AA2 7 ASP A 191 LEU A 199 -1 O VAL A 192 N ILE A 98 SHEET 5 AA2 7 HIS A 227 ARG A 235 -1 O LEU A 233 N TRP A 193 SHEET 6 AA2 7 LEU A 244 PRO A 252 -1 O GLY A 247 N ILE A 232 SHEET 7 AA2 7 ILE A 290 ASN A 292 1 O ARG A 291 N LEU A 244 SHEET 1 AA3 2 SER A 137 ALA A 140 0 SHEET 2 AA3 2 ILE A 163 GLN A 166 -1 O VAL A 164 N GLY A 139 SHEET 1 AA4 4 PRO A 202 THR A 204 0 SHEET 2 AA4 4 LYS A 210 ILE A 217 -1 O ILE A 211 N GLN A 203 SHEET 3 AA4 4 LYS B 210 ILE B 217 -1 O VAL B 212 N TYR A 214 SHEET 4 AA4 4 PRO B 202 THR B 204 -1 N GLN B 203 O ILE B 211 SHEET 1 AA5 4 VAL A 222 ALA A 223 0 SHEET 2 AA5 4 LYS A 210 ILE A 217 -1 N ILE A 217 O VAL A 222 SHEET 3 AA5 4 LYS B 210 ILE B 217 -1 O VAL B 212 N TYR A 214 SHEET 4 AA5 4 VAL B 222 ALA B 223 -1 O VAL B 222 N ILE B 217 SHEET 1 AA6 7 ALA B 74 CYS B 76 0 SHEET 2 AA6 7 HIS B 80 ASP B 85 -1 O LEU B 82 N ARG B 75 SHEET 3 AA6 7 VAL B 90 ILE B 98 -1 O ARG B 92 N SER B 83 SHEET 4 AA6 7 ASP B 191 LEU B 199 -1 O VAL B 194 N GLU B 96 SHEET 5 AA6 7 HIS B 227 ARG B 235 -1 O LEU B 233 N TRP B 193 SHEET 6 AA6 7 LEU B 244 PRO B 252 -1 O GLY B 247 N ILE B 232 SHEET 7 AA6 7 GLN B 266 VAL B 267 -1 O VAL B 267 N ALA B 248 SHEET 1 AA7 7 ALA B 74 CYS B 76 0 SHEET 2 AA7 7 HIS B 80 ASP B 85 -1 O LEU B 82 N ARG B 75 SHEET 3 AA7 7 VAL B 90 ILE B 98 -1 O ARG B 92 N SER B 83 SHEET 4 AA7 7 ASP B 191 LEU B 199 -1 O VAL B 194 N GLU B 96 SHEET 5 AA7 7 HIS B 227 ARG B 235 -1 O LEU B 233 N TRP B 193 SHEET 6 AA7 7 LEU B 244 PRO B 252 -1 O GLY B 247 N ILE B 232 SHEET 7 AA7 7 ILE B 290 ASN B 292 1 O ARG B 291 N LEU B 244 SHEET 1 AA8 2 SER B 137 ALA B 140 0 SHEET 2 AA8 2 ILE B 163 GLN B 166 -1 O GLN B 166 N SER B 137 SSBOND 1 CYS A 294 CYS A 299 1555 1555 2.03 SSBOND 2 CYS B 294 CYS B 299 1555 1555 2.03 LINK OD1 ASN A 171 MG MG A 401 1555 1555 2.44 LINK MG MG A 401 O HOH A 507 1555 1555 2.08 LINK MG MG A 401 O HOH A 508 1555 1555 2.09 LINK MG MG A 401 O3' G E 2 1555 1555 2.45 LINK MG MG A 401 OP1 G E 3 1555 1555 2.56 LINK OD1 ASN B 171 MG MG C 101 1555 1555 2.24 LINK O HOH B 508 MG MG C 101 1555 1555 2.08 LINK O HOH B 513 MG MG C 101 1555 1555 2.08 LINK O HOH B 522 MG MG C 101 1555 1555 2.07 LINK O3' G C 2 MG MG C 101 1555 1555 2.34 LINK OP1 G C 3 MG MG C 101 1555 1555 2.56 SITE 1 AC1 6 ASN A 171 GLU A 179 HOH A 507 HOH A 508 SITE 2 AC1 6 G E 2 G E 3 SITE 1 AC2 1 GLY B 133 SITE 1 AC3 6 ASN B 171 HOH B 508 HOH B 513 HOH B 522 SITE 2 AC3 6 G C 2 G C 3 CRYST1 167.576 167.576 105.438 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005967 0.003445 0.000000 0.00000 SCALE2 0.000000 0.006891 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009484 0.00000