HEADER HYDROLASE 24-MAR-18 5ZKK TITLE CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE FROM ENTAMOEBA TITLE 2 HISTOLYTICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOGLYCERATE MUTASE FAMILY PROTEIN, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHOSERINE PHOSPHATASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTAMOEBA HISTOLYTICA HM-1:IMSS-A; SOURCE 3 ORGANISM_TAXID: 885318; SOURCE 4 GENE: EHI7A_041450; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET 28B KEYWDS HISTIDINE PHOSPHATASE SUPERFAMILY MEMEBER, PHOSPHATASE, CYSTEINE KEYWDS 2 BIOSYNTHETIC PATHWAY, BIOSYNTHETIC PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.KUMARI,S.GOURINATH REVDAT 3 22-NOV-23 5ZKK 1 REMARK REVDAT 2 15-MAY-19 5ZKK 1 JRNL REVDAT 1 03-APR-19 5ZKK 0 JRNL AUTH P.KUMARI,M.BABUTA,A.BHATTACHARYA,S.GOURINATH JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERISATION OF PHOSPHOSERINE JRNL TITL 2 PHOSPHATASE, THAT PLAYS CRITICAL ROLE IN THE OXIDATIVE JRNL TITL 3 STRESS RESPONSE IN THE PARASITE ENTAMOEBA HISTOLYTICA. JRNL REF J.STRUCT.BIOL. V. 206 254 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 30935984 JRNL DOI 10.1016/J.JSB.2019.03.012 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 94.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 37779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1948 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2782 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3049 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 1.69000 REMARK 3 B12 (A**2) : -0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3203 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3072 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4305 ; 2.166 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7082 ; 3.685 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 392 ; 6.359 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;37.912 ;25.672 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 543 ;13.129 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;22.327 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 482 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3539 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 710 ; 0.022 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1573 ; 2.864 ; 2.866 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1572 ; 2.862 ; 2.863 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1963 ; 3.912 ; 4.273 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1964 ; 3.912 ; 4.276 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1630 ; 4.873 ; 3.411 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1630 ; 4.873 ; 3.411 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2343 ; 7.036 ; 4.871 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3701 ; 8.280 ;24.062 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3702 ; 8.283 ;24.068 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300006864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39785 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 94.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IJ5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PHOSPHATE CITRATE BUFFER, PH REMARK 280 4.2, 4% PEG 300, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.30367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.60733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.95550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 138.25917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.65183 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.30367 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 110.60733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 138.25917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 82.95550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.65183 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 198 REMARK 465 GLU A 199 REMARK 465 ASN A 200 REMARK 465 LYS A 201 REMARK 465 SER A 202 REMARK 465 LYS A 203 REMARK 465 THR A 204 REMARK 465 GLY A 205 REMARK 465 HIS A 206 REMARK 465 HIS A 207 REMARK 465 HIS A 208 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 HIS A 211 REMARK 465 THR B 198 REMARK 465 GLU B 199 REMARK 465 ASN B 200 REMARK 465 LYS B 201 REMARK 465 SER B 202 REMARK 465 LYS B 203 REMARK 465 THR B 204 REMARK 465 GLY B 205 REMARK 465 HIS B 206 REMARK 465 HIS B 207 REMARK 465 HIS B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 HIS B 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 ASP A 112 CG OD1 OD2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 ARG A 181 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 182 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 197 CG CD1 CD2 REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 GLU B 91 CG CD OE1 OE2 REMARK 470 HIS B 182 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 112 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 109 69.93 75.90 REMARK 500 ASP A 112 -129.52 44.29 REMARK 500 SER A 145 -154.01 -153.90 REMARK 500 THR A 173 17.05 59.60 REMARK 500 LYS B 44 55.09 30.18 REMARK 500 ASN B 46 55.54 -98.59 REMARK 500 CYS B 109 67.21 75.18 REMARK 500 ASP B 112 -130.70 53.58 REMARK 500 SER B 145 -152.83 -157.79 REMARK 500 THR B 173 18.35 56.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 144 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide BME B 301 and CYS B REMARK 800 23 DBREF 5ZKK A 1 205 UNP N9V397 N9V397_ENTHI 1 205 DBREF 5ZKK B 1 205 UNP N9V397 N9V397_ENTHI 1 205 SEQADV 5ZKK HIS A 206 UNP N9V397 EXPRESSION TAG SEQADV 5ZKK HIS A 207 UNP N9V397 EXPRESSION TAG SEQADV 5ZKK HIS A 208 UNP N9V397 EXPRESSION TAG SEQADV 5ZKK HIS A 209 UNP N9V397 EXPRESSION TAG SEQADV 5ZKK HIS A 210 UNP N9V397 EXPRESSION TAG SEQADV 5ZKK HIS A 211 UNP N9V397 EXPRESSION TAG SEQADV 5ZKK HIS B 206 UNP N9V397 EXPRESSION TAG SEQADV 5ZKK HIS B 207 UNP N9V397 EXPRESSION TAG SEQADV 5ZKK HIS B 208 UNP N9V397 EXPRESSION TAG SEQADV 5ZKK HIS B 209 UNP N9V397 EXPRESSION TAG SEQADV 5ZKK HIS B 210 UNP N9V397 EXPRESSION TAG SEQADV 5ZKK HIS B 211 UNP N9V397 EXPRESSION TAG SEQRES 1 A 211 MET THR LYS LEU ILE LEU ILE ARG HIS GLY GLU THR GLU SEQRES 2 A 211 TRP ASN LEU LEU GLY LYS ILE GLN GLY CYS THR ASP ILE SEQRES 3 A 211 GLU LEU THR PRO ASN GLY ILE GLN GLN ALA ASN GLU VAL SEQRES 4 A 211 ALA GLN GLN ILE LYS GLY ASN PHE ASP ILE ILE TYR SER SEQRES 5 A 211 SER PRO LEU HIS ARG ALA LEU ILE THR ALA GLN LYS ILE SEQRES 6 A 211 ALA GLY ASP LYS GLU VAL HIS LEU ILE GLU GLY MET LYS SEQRES 7 A 211 GLU ILE PRO PHE GLY THR TRP GLU GLY HIS THR PHE GLU SEQRES 8 A 211 GLU LEU ASN GLY ASP ILE ASN TYR LYS LYS PHE LEU SER SEQRES 9 A 211 GLY GLU ASP GLY CYS PRO PHE ASP SER THR GLY MET SER SEQRES 10 A 211 ILE ALA SER TRP SER LYS LYS ASN ALA GLN LEU LEU LEU SEQRES 11 A 211 ASP LEU CYS LYS GLN ASN GLU ASN LYS THR ILE VAL CYS SEQRES 12 A 211 VAL SER HIS GLY ALA TRP ILE LYS THR SER ILE LEU GLY SEQRES 13 A 211 LEU LEU GLU MET GLU PRO THR MET TYR HIS LYS PHE GLN SEQRES 14 A 211 LEU GLY ASN THR GLY ILE THR THR PHE ILE PHE ARG HIS SEQRES 15 A 211 GLY HIS PRO VAL LEU THR SER PHE ASN SER THR GLN HIS SEQRES 16 A 211 LEU LEU THR GLU ASN LYS SER LYS THR GLY HIS HIS HIS SEQRES 17 A 211 HIS HIS HIS SEQRES 1 B 211 MET THR LYS LEU ILE LEU ILE ARG HIS GLY GLU THR GLU SEQRES 2 B 211 TRP ASN LEU LEU GLY LYS ILE GLN GLY CYS THR ASP ILE SEQRES 3 B 211 GLU LEU THR PRO ASN GLY ILE GLN GLN ALA ASN GLU VAL SEQRES 4 B 211 ALA GLN GLN ILE LYS GLY ASN PHE ASP ILE ILE TYR SER SEQRES 5 B 211 SER PRO LEU HIS ARG ALA LEU ILE THR ALA GLN LYS ILE SEQRES 6 B 211 ALA GLY ASP LYS GLU VAL HIS LEU ILE GLU GLY MET LYS SEQRES 7 B 211 GLU ILE PRO PHE GLY THR TRP GLU GLY HIS THR PHE GLU SEQRES 8 B 211 GLU LEU ASN GLY ASP ILE ASN TYR LYS LYS PHE LEU SER SEQRES 9 B 211 GLY GLU ASP GLY CYS PRO PHE ASP SER THR GLY MET SER SEQRES 10 B 211 ILE ALA SER TRP SER LYS LYS ASN ALA GLN LEU LEU LEU SEQRES 11 B 211 ASP LEU CYS LYS GLN ASN GLU ASN LYS THR ILE VAL CYS SEQRES 12 B 211 VAL SER HIS GLY ALA TRP ILE LYS THR SER ILE LEU GLY SEQRES 13 B 211 LEU LEU GLU MET GLU PRO THR MET TYR HIS LYS PHE GLN SEQRES 14 B 211 LEU GLY ASN THR GLY ILE THR THR PHE ILE PHE ARG HIS SEQRES 15 B 211 GLY HIS PRO VAL LEU THR SER PHE ASN SER THR GLN HIS SEQRES 16 B 211 LEU LEU THR GLU ASN LYS SER LYS THR GLY HIS HIS HIS SEQRES 17 B 211 HIS HIS HIS HET BME A 301 4 HET PO4 A 302 5 HET PEG A 303 7 HET PEG A 304 7 HET PEG A 305 7 HET 144 A 306 8 HET GOL A 307 6 HET PG4 A 308 13 HET BME B 301 4 HET PEG B 302 7 HET PEG B 303 7 HET GOL B 304 6 HET PO4 B 305 5 HET PG4 B 306 13 HETNAM BME BETA-MERCAPTOETHANOL HETNAM PO4 PHOSPHATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 144 TRIS-HYDROXYMETHYL-METHYL-AMMONIUM HETNAM GOL GLYCEROL HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BME 2(C2 H6 O S) FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 PEG 5(C4 H10 O3) FORMUL 8 144 C4 H12 N O3 1+ FORMUL 9 GOL 2(C3 H8 O3) FORMUL 10 PG4 2(C8 H18 O5) FORMUL 17 HOH *215(H2 O) HELIX 1 AA1 THR A 12 LEU A 17 1 6 HELIX 2 AA2 THR A 29 LYS A 44 1 16 HELIX 3 AA3 LEU A 55 GLY A 67 1 13 HELIX 4 AA4 GLU A 75 LYS A 78 5 4 HELIX 5 AA5 PHE A 82 GLU A 86 5 5 HELIX 6 AA6 PHE A 90 ASN A 94 5 5 HELIX 7 AA7 ASP A 96 GLY A 105 1 10 HELIX 8 AA8 GLU A 106 CYS A 109 5 4 HELIX 9 AA9 SER A 117 ASN A 136 1 20 HELIX 10 AB1 HIS A 146 GLU A 159 1 14 HELIX 11 AB2 GLU A 161 PHE A 168 5 8 HELIX 12 AB3 THR B 12 GLY B 18 1 7 HELIX 13 AB4 THR B 29 LYS B 44 1 16 HELIX 14 AB5 LEU B 55 GLY B 67 1 13 HELIX 15 AB6 GLU B 75 LYS B 78 5 4 HELIX 16 AB7 PHE B 82 GLU B 86 5 5 HELIX 17 AB8 THR B 89 ASN B 94 5 6 HELIX 18 AB9 ASP B 96 GLY B 105 1 10 HELIX 19 AC1 GLU B 106 CYS B 109 5 4 HELIX 20 AC2 SER B 117 ASN B 136 1 20 HELIX 21 AC3 HIS B 146 LEU B 158 1 13 HELIX 22 AC4 GLU B 161 PHE B 168 5 8 SHEET 1 AA1 6 VAL A 71 LEU A 73 0 SHEET 2 AA1 6 ILE A 49 SER A 52 1 N ILE A 50 O HIS A 72 SHEET 3 AA1 6 THR A 140 SER A 145 1 O VAL A 142 N TYR A 51 SHEET 4 AA1 6 LYS A 3 ARG A 8 1 N ILE A 5 O ILE A 141 SHEET 5 AA1 6 ILE A 175 ARG A 181 -1 O THR A 176 N LEU A 6 SHEET 6 AA1 6 HIS A 184 SER A 192 -1 O VAL A 186 N ILE A 179 SHEET 1 AA2 6 VAL B 71 LEU B 73 0 SHEET 2 AA2 6 ILE B 49 SER B 52 1 N ILE B 50 O HIS B 72 SHEET 3 AA2 6 THR B 140 SER B 145 1 O VAL B 142 N TYR B 51 SHEET 4 AA2 6 LYS B 3 ARG B 8 1 N ILE B 5 O ILE B 141 SHEET 5 AA2 6 ILE B 175 ARG B 181 -1 O THR B 176 N LEU B 6 SHEET 6 AA2 6 HIS B 184 SER B 192 -1 O THR B 188 N THR B 177 LINK SG CYS A 23 S2 BME A 301 1555 1555 1.98 LINK SG CYS B 23 S2 BME B 301 1555 1555 2.03 SITE 1 AC1 5 CYS A 23 GLU A 79 HOH A 421 PRO B 81 SITE 2 AC1 5 BME B 301 SITE 1 AC2 10 ARG A 8 HIS A 9 ASN A 15 GLN A 21 SITE 2 AC2 10 ARG A 57 GLU A 79 HIS A 146 GLY A 147 SITE 3 AC2 10 144 A 306 HOH A 434 SITE 1 AC3 4 ASN A 46 PHE A 47 ASP A 48 THR A 140 SITE 1 AC4 2 GLY A 156 GLY A 183 SITE 1 AC5 2 LYS A 3 ASN A 46 SITE 1 AC6 9 ARG A 8 PHE A 90 GLY A 147 ALA A 148 SITE 2 AC6 9 TYR A 165 PO4 A 302 HOH A 411 HOH A 434 SITE 3 AC6 9 HOH A 435 SITE 1 AC7 4 THR A 2 CYS A 133 GLU A 137 GLY A 183 SITE 1 AC8 3 ILE A 60 GLN A 63 LYS A 64 SITE 1 AC9 3 LYS B 123 LEU B 130 GLY B 156 SITE 1 AD1 5 LYS B 3 ILE B 43 THR B 177 HOH B 406 SITE 2 AD1 5 HOH B 429 SITE 1 AD2 3 THR B 2 CYS B 133 GLU B 137 SITE 1 AD3 10 ARG B 8 HIS B 9 ASN B 15 GLN B 21 SITE 2 AD3 10 ARG B 57 GLU B 79 HIS B 146 GLY B 147 SITE 3 AD3 10 HOH B 464 HOH B 481 SITE 1 AD4 4 ILE B 33 GLN B 63 LYS B 64 HOH B 447 SITE 1 AD5 10 THR A 114 BME A 301 GLN B 21 GLY B 22 SITE 2 AD5 10 THR B 24 LYS B 78 GLU B 79 GLU B 86 SITE 3 AD5 10 HOH B 423 HOH B 427 CRYST1 109.172 109.172 165.911 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009160 0.005288 0.000000 0.00000 SCALE2 0.000000 0.010577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006027 0.00000