HEADER PROTEIN BINDING 02-APR-18 5ZMB TITLE A-UBIQUITIN LIKE PROTEIN FROM THE TRYPANOSOMA BRUCEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUINTIN-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-81; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI TREU927; SOURCE 3 ORGANISM_TAXID: 185431; SOURCE 4 GENE: TB927.6.3140; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS STRUCTURE FROM CYANA 3.0, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.MI,X.M.TU REVDAT 3 14-JUN-23 5ZMB 1 REMARK REVDAT 2 07-NOV-18 5ZMB 1 JRNL REVDAT 1 15-AUG-18 5ZMB 0 JRNL AUTH J.MI,J.ZHANG,S.LIAO,X.TU JRNL TITL SOLUTION STRUCTURE OF A UBIQUITIN-LIKE PROTEIN FROM JRNL TITL 2 TRYPANOSOMA BRUCEI JRNL REF PROTEIN SCI. V. 27 1831 2018 JRNL REFN ESSN 1469-896X JRNL PMID 30058168 JRNL DOI 10.1002/PRO.3492 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007301. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 UBIQUITIN-LIKE PROTEIN, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D C(CO)NH; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, SPARKY REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 32 -43.07 -176.65 REMARK 500 1 SER A 82 93.78 56.52 REMARK 500 2 ASN A 32 -42.24 -176.28 REMARK 500 2 SER A 82 81.35 58.72 REMARK 500 3 GLU A 12 48.01 -144.46 REMARK 500 3 ASN A 32 -42.53 -176.04 REMARK 500 3 SER A 82 94.22 56.65 REMARK 500 4 SER A 11 173.75 60.27 REMARK 500 4 ASN A 32 -43.17 -176.80 REMARK 500 4 SER A 82 88.55 51.89 REMARK 500 5 ASN A 32 -43.64 -177.79 REMARK 500 5 SER A 82 83.00 51.87 REMARK 500 6 SER A 11 -55.05 -153.20 REMARK 500 6 GLU A 12 73.02 -114.08 REMARK 500 6 ASN A 32 -42.70 -176.32 REMARK 500 6 SER A 82 88.21 51.71 REMARK 500 7 SER A 11 -179.03 -64.25 REMARK 500 7 ASN A 32 -43.27 -176.85 REMARK 500 7 SER A 82 86.88 60.87 REMARK 500 8 SER A 11 -61.43 -122.74 REMARK 500 8 ASN A 32 -42.29 -176.43 REMARK 500 8 SER A 82 83.24 52.01 REMARK 500 9 SER A 11 -65.17 -135.24 REMARK 500 9 ASN A 32 -42.36 -176.40 REMARK 500 9 LEU A 67 -66.39 -99.04 REMARK 500 10 SER A 11 -43.41 -174.47 REMARK 500 10 ASN A 32 -43.08 -176.22 REMARK 500 10 ASP A 69 35.60 -95.44 REMARK 500 10 SER A 82 89.44 55.20 REMARK 500 11 ASN A 32 -43.32 -177.15 REMARK 500 11 SER A 82 88.86 59.58 REMARK 500 12 GLU A 12 90.02 59.10 REMARK 500 12 ASN A 32 -32.27 177.36 REMARK 500 12 LEU A 67 -63.83 -128.37 REMARK 500 12 SER A 82 81.60 52.50 REMARK 500 13 SER A 11 -169.82 61.83 REMARK 500 13 GLU A 12 -177.05 63.49 REMARK 500 13 ASN A 32 -43.08 -176.64 REMARK 500 13 LEU A 67 -58.36 -145.68 REMARK 500 13 SER A 82 88.25 50.88 REMARK 500 14 ASN A 32 -33.29 177.68 REMARK 500 14 SER A 82 88.35 53.38 REMARK 500 15 GLU A 12 45.28 -101.86 REMARK 500 15 ASN A 32 -37.52 -176.14 REMARK 500 15 SER A 82 80.44 51.78 REMARK 500 16 ASN A 32 -42.36 -177.11 REMARK 500 16 SER A 82 81.68 53.42 REMARK 500 17 ASN A 32 -43.54 -179.34 REMARK 500 17 SER A 82 93.41 59.01 REMARK 500 18 SER A 11 -61.18 -95.48 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36175 RELATED DB: BMRB REMARK 900 A-UBIQUITIN LIKE PROTEIN FROM THE TRYPANOSOMA BRUCEI DBREF 5ZMB A 10 90 UNP Q583M0 Q583M0_TRYB2 1 81 SEQRES 1 A 81 MET SER GLU THR ILE PRO VAL SER VAL GLN CYS CYS GLU SEQRES 2 A 81 GLY ARG PHE GLU LEU SER VAL ASP SER ASN HIS THR LEU SEQRES 3 A 81 ARG ASP VAL LEU ARG GLN PHE LYS ARG GLU VAL ALA ALA SEQRES 4 A 81 LEU ASP PRO ILE ASN LEU GLU GLU TYR VAL VAL ASN HIS SEQRES 5 A 81 GLU GLY LYS LEU LEU LEU ASP ASP SER VAL THR LEU GLN SEQRES 6 A 81 THR VAL GLY VAL LYS LYS ASP SER VAL PHE VAL LEU VAL SEQRES 7 A 81 ARG LYS ALA HELIX 1 AA1 THR A 34 ALA A 47 1 14 HELIX 2 AA2 ASN A 53 TYR A 57 5 5 HELIX 3 AA3 THR A 72 GLY A 77 1 6 SHEET 1 AA1 5 ARG A 24 SER A 28 0 SHEET 2 AA1 5 PRO A 15 GLN A 19 -1 N VAL A 16 O LEU A 27 SHEET 3 AA1 5 VAL A 83 VAL A 87 1 O PHE A 84 N GLN A 19 SHEET 4 AA1 5 VAL A 58 HIS A 61 -1 N ASN A 60 O VAL A 85 SHEET 5 AA1 5 LYS A 64 LEU A 65 -1 O LYS A 64 N HIS A 61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1