HEADER PLANT PROTEIN 09-APR-18 5ZNE TITLE THE CRYSTAL STRUCTURE OF IMMUNE RECEPTOR RGA5A_S OF RESISTANCE PROTEIN TITLE 2 PIA FROM RICE (ORYZA SATIVA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NBS-LRR TYPE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: S DOMAIN; COMPND 5 SYNONYM: RGA5A; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: SF FILE CONTAINS FRIEDEL PAIRS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. JAPONICA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: OS11GRGA5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RGA5A_S, RESISTANCE PROTEIN, RICE, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.W.GUO,D.HUANG,J.F.LIU,Y.L.PENG REVDAT 3 22-NOV-23 5ZNE 1 REMARK REVDAT 2 28-NOV-18 5ZNE 1 JRNL REVDAT 1 24-OCT-18 5ZNE 0 JRNL AUTH L.GUO,S.CESARI,K.DE GUILLEN,V.CHALVON,L.MAMMRI,M.MA, JRNL AUTH 2 I.MEUSNIER,F.BONNOT,A.PADILLA,Y.L.PENG,J.LIU,T.KROJ JRNL TITL SPECIFIC RECOGNITION OF TWO MAX EFFECTORS BY INTEGRATED HMA JRNL TITL 2 DOMAINS IN PLANT IMMUNE RECEPTORS INVOLVES DISTINCT BINDING JRNL TITL 3 SURFACES JRNL REF PROC. NATL. ACAD. SCI. V. 115 11637 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30355769 JRNL DOI 10.1073/PNAS.1810705115 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 21743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3652 - 3.5596 1.00 2673 140 0.1856 0.2224 REMARK 3 2 3.5596 - 2.8255 1.00 2668 138 0.2074 0.2016 REMARK 3 3 2.8255 - 2.4683 1.00 2677 145 0.2281 0.2524 REMARK 3 4 2.4683 - 2.2427 0.95 2550 131 0.2506 0.2214 REMARK 3 5 2.2427 - 2.0819 0.94 2498 146 0.2321 0.2616 REMARK 3 6 2.0819 - 1.9592 0.99 2621 150 0.2435 0.2637 REMARK 3 7 1.9592 - 1.8610 0.86 2295 119 0.3955 0.4557 REMARK 3 8 1.8610 - 1.7800 0.99 2638 154 0.3196 0.3286 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 557 REMARK 3 ANGLE : 0.805 751 REMARK 3 CHIRALITY : 0.062 96 REMARK 3 PLANARITY : 0.005 94 REMARK 3 DIHEDRAL : 8.439 488 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 997 THROUGH 1008 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1450 22.5430 -9.8199 REMARK 3 T TENSOR REMARK 3 T11: 0.1658 T22: 0.2740 REMARK 3 T33: 0.1882 T12: -0.0255 REMARK 3 T13: -0.0279 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 9.1130 L22: 7.0162 REMARK 3 L33: 7.6284 L12: 3.2013 REMARK 3 L13: 0.4870 L23: -0.9394 REMARK 3 S TENSOR REMARK 3 S11: 0.2527 S12: -0.4529 S13: -0.0277 REMARK 3 S21: 0.0413 S22: -0.4977 S23: -0.1449 REMARK 3 S31: -0.0239 S32: 0.7640 S33: 0.2632 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1009 THROUGH 1020 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6372 29.2751 -6.5332 REMARK 3 T TENSOR REMARK 3 T11: 0.3137 T22: 0.4133 REMARK 3 T33: 0.2907 T12: -0.0671 REMARK 3 T13: -0.1139 T23: 0.0602 REMARK 3 L TENSOR REMARK 3 L11: 2.7380 L22: 5.9287 REMARK 3 L33: 2.6991 L12: -1.0964 REMARK 3 L13: -7.7927 L23: 0.8917 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: 0.3533 S13: 0.3971 REMARK 3 S21: -0.2145 S22: -0.0419 S23: -0.2096 REMARK 3 S31: -0.5125 S32: 0.3237 S33: 0.1439 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1021 THROUGH 1031 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5056 22.6030 -0.3459 REMARK 3 T TENSOR REMARK 3 T11: 0.2755 T22: 0.3114 REMARK 3 T33: 0.2065 T12: 0.0026 REMARK 3 T13: -0.0123 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 3.0216 L22: 7.6981 REMARK 3 L33: 7.5802 L12: -0.2359 REMARK 3 L13: -2.9618 L23: 0.5721 REMARK 3 S TENSOR REMARK 3 S11: 0.2260 S12: -0.4292 S13: -0.2283 REMARK 3 S21: -0.0707 S22: -0.3858 S23: 0.3421 REMARK 3 S31: -0.1320 S32: -0.0713 S33: 0.2201 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1032 THROUGH 1046 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8348 20.1408 -7.4240 REMARK 3 T TENSOR REMARK 3 T11: 0.2529 T22: 0.3144 REMARK 3 T33: 0.1995 T12: -0.0088 REMARK 3 T13: -0.0655 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 4.0817 L22: 9.8509 REMARK 3 L33: 10.2507 L12: -0.4155 REMARK 3 L13: -1.2204 L23: -1.1719 REMARK 3 S TENSOR REMARK 3 S11: 0.2034 S12: 0.2069 S13: -0.3672 REMARK 3 S21: -0.2740 S22: -0.3704 S23: -0.0368 REMARK 3 S31: 0.6262 S32: -0.3030 S33: 0.1174 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1047 THROUGH 1058 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8105 30.9175 -9.5898 REMARK 3 T TENSOR REMARK 3 T11: 0.5758 T22: 0.4998 REMARK 3 T33: 0.5589 T12: 0.1094 REMARK 3 T13: -0.0764 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 2.6709 L22: 3.1058 REMARK 3 L33: 2.9028 L12: 6.0641 REMARK 3 L13: -1.1153 L23: -3.6999 REMARK 3 S TENSOR REMARK 3 S11: -0.3395 S12: -0.1156 S13: 1.5877 REMARK 3 S21: 0.3070 S22: -0.0092 S23: 0.7328 REMARK 3 S31: -1.6358 S32: -0.6998 S33: 0.3311 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1059 THROUGH 1069 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8259 19.4457 -10.6352 REMARK 3 T TENSOR REMARK 3 T11: 0.3285 T22: 0.3329 REMARK 3 T33: 0.2647 T12: -0.0771 REMARK 3 T13: -0.0199 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 10.8162 L22: 3.5709 REMARK 3 L33: 8.7621 L12: 6.3051 REMARK 3 L13: -7.0031 L23: -5.2552 REMARK 3 S TENSOR REMARK 3 S11: -0.2292 S12: -0.1585 S13: -0.4765 REMARK 3 S21: 0.0030 S22: -0.2743 S23: -0.5100 REMARK 3 S31: 0.5245 S32: -0.3803 S33: 0.5469 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZNE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007383. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAC SCIENCE DIP-320 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21743 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 55.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.01194 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DXS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.18 M AMMONIUM NITRATE 20% PEG3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.16750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.75125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.58375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.16750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 19.58375 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.75125 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1231 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 980 REMARK 465 ASP A 981 REMARK 465 LEU A 982 REMARK 465 SER A 983 REMARK 465 ASN A 984 REMARK 465 MET A 985 REMARK 465 GLU A 986 REMARK 465 SER A 987 REMARK 465 VAL A 988 REMARK 465 VAL A 989 REMARK 465 GLU A 990 REMARK 465 SER A 991 REMARK 465 ALA A 992 REMARK 465 LEU A 993 REMARK 465 THR A 994 REMARK 465 GLY A 995 REMARK 465 GLN A 996 REMARK 465 GLU A 1070 REMARK 465 LYS A 1071 REMARK 465 GLU A 1072 REMARK 465 LYS A 1073 REMARK 465 THR A 1074 REMARK 465 GLN A 1075 REMARK 465 LEU A 1076 REMARK 465 ALA A 1077 REMARK 465 GLY A 1078 REMARK 465 GLY A 1079 REMARK 465 LYS A 1080 REMARK 465 LYS A 1081 REMARK 465 GLY A 1082 REMARK 465 ALA A 1083 REMARK 465 TYR A 1084 REMARK 465 LYS A 1085 REMARK 465 LYS A 1086 REMARK 465 HIS A 1087 REMARK 465 PRO A 1088 REMARK 465 THR A 1089 REMARK 465 TYR A 1090 REMARK 465 ASN A 1091 REMARK 465 LEU A 1092 REMARK 465 SER A 1093 REMARK 465 PRO A 1094 REMARK 465 PHE A 1095 REMARK 465 ASP A 1096 REMARK 465 TYR A 1097 REMARK 465 VAL A 1098 REMARK 465 GLU A 1099 REMARK 465 TYR A 1100 REMARK 465 PRO A 1101 REMARK 465 PRO A 1102 REMARK 465 SER A 1103 REMARK 465 ALA A 1104 REMARK 465 PRO A 1105 REMARK 465 ILE A 1106 REMARK 465 MET A 1107 REMARK 465 GLN A 1108 REMARK 465 ASP A 1109 REMARK 465 ILE A 1110 REMARK 465 ASN A 1111 REMARK 465 PRO A 1112 REMARK 465 CYS A 1113 REMARK 465 SER A 1114 REMARK 465 THR A 1115 REMARK 465 MET A 1116 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1235 O HOH A 1238 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A1006 67.47 -150.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1235 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A1236 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A1237 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A1238 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH A1239 DISTANCE = 8.03 ANGSTROMS REMARK 525 HOH A1240 DISTANCE = 8.32 ANGSTROMS REMARK 525 HOH A1241 DISTANCE = 8.77 ANGSTROMS DBREF 5ZNE A 982 1116 UNP F7J0N2 F7J0N2_ORYSJ 982 1116 SEQADV 5ZNE MET A 980 UNP F7J0N2 INITIATING METHIONINE SEQADV 5ZNE ASP A 981 UNP F7J0N2 EXPRESSION TAG SEQRES 1 A 137 MET ASP LEU SER ASN MET GLU SER VAL VAL GLU SER ALA SEQRES 2 A 137 LEU THR GLY GLN ARG THR LYS ILE VAL VAL LYS VAL HIS SEQRES 3 A 137 MET PRO CYS GLY LYS SER ARG ALA LYS ALA MET ALA LEU SEQRES 4 A 137 ALA ALA SER VAL ASN GLY VAL ASP SER VAL GLU ILE THR SEQRES 5 A 137 GLY GLU ASP LYS ASP ARG LEU VAL VAL VAL GLY ARG GLY SEQRES 6 A 137 ILE ASP PRO VAL ARG LEU VAL ALA LEU LEU ARG GLU LYS SEQRES 7 A 137 CYS GLY LEU ALA GLU LEU LEU MET VAL GLU LEU VAL GLU SEQRES 8 A 137 LYS GLU LYS THR GLN LEU ALA GLY GLY LYS LYS GLY ALA SEQRES 9 A 137 TYR LYS LYS HIS PRO THR TYR ASN LEU SER PRO PHE ASP SEQRES 10 A 137 TYR VAL GLU TYR PRO PRO SER ALA PRO ILE MET GLN ASP SEQRES 11 A 137 ILE ASN PRO CYS SER THR MET FORMUL 2 HOH *41(H2 O) HELIX 1 AA1 CYS A 1008 SER A 1021 1 14 HELIX 2 AA2 ASP A 1046 GLY A 1059 1 14 SHEET 1 AA1 4 VAL A1025 THR A1031 0 SHEET 2 AA1 4 ARG A1037 GLY A1042 -1 O VAL A1039 N GLU A1029 SHEET 3 AA1 4 THR A 998 VAL A1004 -1 N VAL A1002 O LEU A1038 SHEET 4 AA1 4 ALA A1061 LEU A1068 -1 O GLU A1067 N LYS A 999 CRYST1 55.619 55.619 78.335 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017979 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012766 0.00000