HEADER OXIDOREDUCTASE 09-APR-18 5ZNH TITLE CATECHOL 2,3-DIOXYGENASE WITH 4-METHYL CATECHOL FROM DIAPHOROBACTER SP TITLE 2 DS2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATECHOL 2,3-DIOXYGENASE, EXTRADIOL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 1.13.11.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DIAPHOROBACTER SP. DS2; SOURCE 3 ORGANISM_TAXID: 1302548; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS COMPLEX WITH 4-METHYLCATECHOL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.MISHRA,C.K.ARYA,R.SUBRAMANIYAN,G.RAMANATHAN REVDAT 2 22-NOV-23 5ZNH 1 REMARK REVDAT 1 17-APR-19 5ZNH 0 JRNL AUTH K.MISHRA,C.K.ARYA,R.SUBRAMANIYAN,G.RAMANATHAN JRNL TITL CATECHOL 2,3-DIOXYGENASE WITH 4-METHYL CATECHOL FROM JRNL TITL 2 DIAPHOROBACTER SP DS2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 716 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9986 - 4.1035 1.00 2882 153 0.1792 0.2205 REMARK 3 2 4.1035 - 3.2573 1.00 2692 147 0.1927 0.2126 REMARK 3 3 3.2573 - 2.8456 1.00 2657 149 0.2232 0.2877 REMARK 3 4 2.8456 - 2.5854 1.00 2671 133 0.2318 0.2638 REMARK 3 5 2.5854 - 2.4001 1.00 2637 134 0.2425 0.3325 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8371 12.4359 37.2124 REMARK 3 T TENSOR REMARK 3 T11: 0.3523 T22: 0.7903 REMARK 3 T33: 0.4217 T12: 0.2517 REMARK 3 T13: 0.0905 T23: 0.1169 REMARK 3 L TENSOR REMARK 3 L11: 2.3881 L22: 1.9877 REMARK 3 L33: 1.5377 L12: 0.2329 REMARK 3 L13: 0.2175 L23: -0.2063 REMARK 3 S TENSOR REMARK 3 S11: 0.3019 S12: 0.7089 S13: 0.2743 REMARK 3 S21: -0.3698 S22: -0.1909 S23: 0.0788 REMARK 3 S31: -0.2073 S32: 0.1010 S33: -0.1100 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4914 11.8789 43.9086 REMARK 3 T TENSOR REMARK 3 T11: 0.3114 T22: 0.7504 REMARK 3 T33: 0.5073 T12: 0.2555 REMARK 3 T13: 0.0012 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 2.8432 L22: 1.6180 REMARK 3 L33: 1.1687 L12: -0.0203 REMARK 3 L13: 0.6383 L23: -0.5250 REMARK 3 S TENSOR REMARK 3 S11: 0.3590 S12: 0.4476 S13: 0.2109 REMARK 3 S21: -0.2031 S22: -0.1791 S23: 0.4659 REMARK 3 S31: -0.3048 S32: -0.4515 S33: -0.1434 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7042 10.4596 46.4032 REMARK 3 T TENSOR REMARK 3 T11: 0.2947 T22: 0.6383 REMARK 3 T33: 0.3517 T12: 0.1946 REMARK 3 T13: 0.0580 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.9303 L22: 2.2393 REMARK 3 L33: 1.0386 L12: 0.2322 REMARK 3 L13: 0.2806 L23: 0.2260 REMARK 3 S TENSOR REMARK 3 S11: 0.3552 S12: 0.3590 S13: 0.2202 REMARK 3 S21: -0.1980 S22: -0.2724 S23: 0.1712 REMARK 3 S31: -0.1427 S32: -0.1251 S33: -0.1261 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0038 14.8157 56.7653 REMARK 3 T TENSOR REMARK 3 T11: 0.3082 T22: 0.5315 REMARK 3 T33: 0.4635 T12: 0.0378 REMARK 3 T13: 0.1166 T23: -0.0608 REMARK 3 L TENSOR REMARK 3 L11: 1.7101 L22: 1.1893 REMARK 3 L33: 1.5219 L12: 0.0676 REMARK 3 L13: 0.0025 L23: -0.5092 REMARK 3 S TENSOR REMARK 3 S11: 0.3064 S12: -0.1045 S13: 0.2449 REMARK 3 S21: 0.1010 S22: -0.2459 S23: 0.1491 REMARK 3 S31: -0.2039 S32: -0.0127 S33: -0.0959 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6832 16.1014 51.5949 REMARK 3 T TENSOR REMARK 3 T11: 0.3578 T22: 0.6828 REMARK 3 T33: 0.5836 T12: 0.0699 REMARK 3 T13: 0.1728 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 2.1381 L22: 1.6256 REMARK 3 L33: 1.7122 L12: 0.1212 REMARK 3 L13: 0.4203 L23: -0.6053 REMARK 3 S TENSOR REMARK 3 S11: 0.3897 S12: -0.2798 S13: 0.6477 REMARK 3 S21: 0.0655 S22: -0.6125 S23: -0.0831 REMARK 3 S31: -0.1839 S32: 0.6179 S33: -0.0946 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3295 16.9620 63.4269 REMARK 3 T TENSOR REMARK 3 T11: 0.4111 T22: 0.6420 REMARK 3 T33: 0.5535 T12: -0.1117 REMARK 3 T13: 0.1617 T23: -0.0705 REMARK 3 L TENSOR REMARK 3 L11: 1.9135 L22: 1.6396 REMARK 3 L33: 1.6290 L12: -0.4863 REMARK 3 L13: 0.6441 L23: -0.5669 REMARK 3 S TENSOR REMARK 3 S11: 0.5557 S12: -0.2656 S13: 0.5842 REMARK 3 S21: 0.1597 S22: -0.6239 S23: -0.5266 REMARK 3 S31: -0.5143 S32: 0.4179 S33: -0.0429 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZNH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0053 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN COOLED DUAL REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14302 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.67400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3HQ0 REMARK 200 REMARK 200 REMARK: DIAMOND SHAPED CRYSTAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% V/V PEG, 0.1M HEPES SODIUM SALT PH REMARK 280 7.5, 0.2M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.4K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.24600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.12300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.24600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.12300 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.24600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 38.12300 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 76.24600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 38.12300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -167.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 101.89400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 114.36900 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 101.89400 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 114.36900 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 164 88.56 -150.37 REMARK 500 VAL A 187 -168.82 -118.92 REMARK 500 THR A 203 34.38 -95.11 REMARK 500 THR A 255 -12.93 70.74 REMARK 500 PRO A 265 12.40 -68.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 149 OD2 REMARK 620 2 THR A 204 OG1 131.6 REMARK 620 3 HIS A 206 O 84.6 89.6 REMARK 620 4 ASP A 207 OD1 147.5 78.5 83.9 REMARK 620 5 HOH A 506 O 52.2 79.7 77.0 150.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 150 NE2 REMARK 620 2 HIS A 220 NE2 111.6 REMARK 620 3 GLU A 271 OE1 101.4 87.7 REMARK 620 4 MCT A 402 O4 79.8 165.6 98.9 REMARK 620 5 MCT A 402 O3 146.2 79.3 111.2 86.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MCT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 405 DBREF 5ZNH A 1 314 PDB 5ZNH 5ZNH 1 314 SEQRES 1 A 314 MET GLY VAL LEU ARG ILE GLY HIS ALA SER LEU LYS VAL SEQRES 2 A 314 MET ASP MET ASP ALA ALA VAL ARG HIS TYR GLU ASN VAL SEQRES 3 A 314 LEU GLY MET LYS THR THR MET LYS ASP LYS ALA GLY ASN SEQRES 4 A 314 VAL TYR LEU LYS CYS TRP ASP GLU TRP ASP LYS TYR SER SEQRES 5 A 314 VAL ILE LEU THR PRO SER ASP GLN ALA GLY MET ASN HIS SEQRES 6 A 314 LEU ALA TYR LYS VAL GLU LYS GLU ALA ASP LEU GLU ALA SEQRES 7 A 314 LEU GLN GLN LYS ILE GLU ALA TRP GLY VAL LYS THR THR SEQRES 8 A 314 MET LEU ASP GLU GLY THR LEU PRO SER THR GLY ARG MET SEQRES 9 A 314 LEU GLN PHE LYS LEU PRO SER GLY HIS GLU MET ARG LEU SEQRES 10 A 314 TYR ALA SER LYS GLU PHE VAL GLY THR ASP VAL GLY ASN SEQRES 11 A 314 ILE ASN PRO ASP PRO TRP PRO ASP GLY LEU LYS GLY ALA SEQRES 12 A 314 GLY ALA HIS TRP LEU ASP HIS CYS LEU LEU VAL CYS GLU SEQRES 13 A 314 MET ASN PRO GLU ALA GLY ILE ASN THR VAL ALA ASP ASN SEQRES 14 A 314 THR ARG PHE VAL THR GLU CYS LEU ASP PHE PHE LEU THR SEQRES 15 A 314 GLU GLN VAL LEU VAL GLY PRO GLY GLY SER ILE GLN ALA SEQRES 16 A 314 THR THR PHE LEU ALA ARG THR THR THR PRO HIS ASP ILE SEQRES 17 A 314 ALA PHE VAL GLY GLY PRO THR SER GLY LEU HIS HIS ILE SEQRES 18 A 314 ALA PHE PHE LEU ASP SER TRP HIS ASP VAL LEU LYS ALA SEQRES 19 A 314 ALA ASP VAL MET ALA LYS ASN LYS VAL ARG ILE ASP VAL SEQRES 20 A 314 ALA PRO THR ARG HIS GLY ILE THR ARG GLY GLU THR ILE SEQRES 21 A 314 TYR PHE PHE ASP PRO SER GLY ASN ARG ASN GLU THR PHE SEQRES 22 A 314 ALA GLY LEU GLY TYR LEU ALA GLN ARG ASP ARG PRO VAL SEQRES 23 A 314 THR THR TRP THR GLU ASP GLN LEU GLY SER ALA ILE PHE SEQRES 24 A 314 TYR HIS THR GLY TYR LEU GLU PRO SER PHE THR ASP VAL SEQRES 25 A 314 TYR THR HET FE A 401 1 HET MCT A 402 9 HET PEG A 403 7 HET EDO A 404 4 HET CA A 405 1 HETNAM FE FE (III) ION HETNAM MCT 4-METHYLCATECHOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETSYN MCT 4-METHYL-1,2-BENZENEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 FE FE 3+ FORMUL 3 MCT C7 H8 O2 FORMUL 4 PEG C4 H10 O3 FORMUL 5 EDO C2 H6 O2 FORMUL 6 CA CA 2+ FORMUL 7 HOH *33(H2 O) HELIX 1 AA1 ASP A 15 VAL A 26 1 12 HELIX 2 AA2 GLU A 73 GLY A 87 1 15 HELIX 3 AA3 PRO A 159 GLY A 162 5 4 HELIX 4 AA4 THR A 165 CYS A 176 1 12 HELIX 5 AA5 SER A 227 ASN A 241 1 15 HELIX 6 AA6 GLN A 293 PHE A 299 1 7 HELIX 7 AA7 GLU A 306 VAL A 312 1 7 SHEET 1 AA1 8 LYS A 30 LYS A 34 0 SHEET 2 AA1 8 VAL A 40 LYS A 43 -1 O TYR A 41 N THR A 32 SHEET 3 AA1 8 VAL A 53 PRO A 57 -1 O LEU A 55 N VAL A 40 SHEET 4 AA1 8 VAL A 3 VAL A 13 1 N LEU A 11 O ILE A 54 SHEET 5 AA1 8 MET A 63 VAL A 70 -1 O LYS A 69 N LEU A 4 SHEET 6 AA1 8 GLU A 114 TYR A 118 1 O ARG A 116 N LEU A 66 SHEET 7 AA1 8 MET A 104 LYS A 108 -1 N PHE A 107 O MET A 115 SHEET 8 AA1 8 THR A 90 LEU A 93 -1 N LEU A 93 O MET A 104 SHEET 1 AA2 6 ILE A 163 ASN A 164 0 SHEET 2 AA2 6 LEU A 148 ASN A 158 -1 N ASN A 158 O ILE A 163 SHEET 3 AA2 6 GLY A 217 LEU A 225 -1 O HIS A 220 N LEU A 152 SHEET 4 AA2 6 ARG A 269 ALA A 274 1 O PHE A 273 N LEU A 225 SHEET 5 AA2 6 GLU A 258 PHE A 263 -1 N PHE A 262 O ASN A 270 SHEET 6 AA2 6 ILE A 245 ARG A 251 -1 N THR A 250 O THR A 259 SHEET 1 AA3 6 ILE A 163 ASN A 164 0 SHEET 2 AA3 6 LEU A 148 ASN A 158 -1 N ASN A 158 O ILE A 163 SHEET 3 AA3 6 ILE A 208 GLY A 213 1 O VAL A 211 N CYS A 155 SHEET 4 AA3 6 ILE A 193 ALA A 200 -1 N LEU A 199 O ILE A 208 SHEET 5 AA3 6 PHE A 180 VAL A 187 -1 N VAL A 185 O THR A 196 SHEET 6 AA3 6 THR A 287 THR A 290 1 O TRP A 289 N LEU A 186 LINK OD2 ASP A 149 CA CA A 405 1555 1555 3.18 LINK NE2 HIS A 150 FE FE A 401 1555 1555 2.16 LINK OG1 THR A 204 CA CA A 405 1555 1555 2.68 LINK O HIS A 206 CA CA A 405 1555 1555 2.72 LINK OD1 ASP A 207 CA CA A 405 1555 1555 2.73 LINK NE2 HIS A 220 FE FE A 401 1555 1555 2.22 LINK OE1 GLU A 271 FE FE A 401 1555 1555 2.01 LINK FE FE A 401 O4 MCT A 402 1555 1555 2.06 LINK FE FE A 401 O3 MCT A 402 1555 1555 2.05 LINK CA CA A 405 O HOH A 506 1555 1555 2.59 SITE 1 AC1 4 HIS A 150 HIS A 220 GLU A 271 MCT A 402 SITE 1 AC2 13 HIS A 150 PHE A 198 HIS A 206 HIS A 220 SITE 2 AC2 13 HIS A 252 ILE A 254 THR A 255 TYR A 261 SITE 3 AC2 13 GLU A 271 PHE A 273 ALA A 297 ILE A 298 SITE 4 AC2 13 FE A 401 SITE 1 AC3 3 GLY A 162 ASN A 164 ASP A 168 SITE 1 AC4 3 THR A 97 LEU A 98 ARG A 116 SITE 1 AC5 5 ASP A 149 THR A 204 HIS A 206 ASP A 207 SITE 2 AC5 5 HOH A 506 CRYST1 101.894 101.894 114.369 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009814 0.005666 0.000000 0.00000 SCALE2 0.000000 0.011332 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008744 0.00000