HEADER GENE REGULATION 10-APR-18 5ZNP TITLE CRYSTAL STRUCTURE OF PTSHL IN COMPLEX WITH AN H3K4ME3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT LIFE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 15-MER PEPTIDE FROM HISTONE H3.2; COMPND 7 CHAIN: P, Q; COMPND 8 SYNONYM: H3(1-15)K4ME3 PEPTIDE, HISTONE H3.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POPULUS TRICHOCARPA; SOURCE 3 ORGANISM_COMMON: WESTERN BALSAM POPLAR; SOURCE 4 ORGANISM_TAXID: 3694; SOURCE 5 GENE: POPTR_0004S16700G, POPTR_004G159900V3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-SUMO; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 14 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 15 ORGANISM_TAXID: 3702 KEYWDS BAH, PHD, SHL, PLANT, H3K4ME3, EPIGENETICS, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR X.LV,J.DU REVDAT 2 22-NOV-23 5ZNP 1 REMARK REVDAT 1 18-JUL-18 5ZNP 0 JRNL AUTH S.QIAN,X.LV,R.N.SCHEID,L.LU,Z.YANG,W.CHEN,R.LIU,M.D.BOERSMA, JRNL AUTH 2 J.M.DENU,X.ZHONG,J.DU JRNL TITL DUAL RECOGNITION OF H3K4ME3 AND H3K27ME3 BY A PLANT HISTONE JRNL TITL 2 READER SHL. JRNL REF NAT COMMUN V. 9 2425 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29930355 JRNL DOI 10.1038/S41467-018-04836-Y REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 12004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9607 - 4.4437 0.99 2960 149 0.2329 0.2634 REMARK 3 2 4.4437 - 3.5275 1.00 2868 141 0.2292 0.2713 REMARK 3 3 3.5275 - 3.0817 1.00 2816 139 0.2791 0.3387 REMARK 3 4 3.0817 - 2.8000 0.99 2786 145 0.3277 0.3949 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3201 REMARK 3 ANGLE : 1.066 4316 REMARK 3 CHIRALITY : 0.040 436 REMARK 3 PLANARITY : 0.005 571 REMARK 3 DIHEDRAL : 16.295 1218 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7631 -18.1750 11.2826 REMARK 3 T TENSOR REMARK 3 T11: 0.3304 T22: 0.3988 REMARK 3 T33: 0.4670 T12: -0.0506 REMARK 3 T13: 0.0233 T23: -0.0669 REMARK 3 L TENSOR REMARK 3 L11: 7.2081 L22: 7.7727 REMARK 3 L33: 2.9394 L12: -3.3010 REMARK 3 L13: 0.8713 L23: -0.6009 REMARK 3 S TENSOR REMARK 3 S11: 0.1450 S12: 0.0575 S13: -0.3120 REMARK 3 S21: -0.1403 S22: -0.2805 S23: -0.2515 REMARK 3 S31: -0.0960 S32: -0.1951 S33: 0.1011 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2621 -17.9257 13.4856 REMARK 3 T TENSOR REMARK 3 T11: 0.3394 T22: 0.4842 REMARK 3 T33: 0.5836 T12: 0.0468 REMARK 3 T13: -0.0223 T23: -0.0661 REMARK 3 L TENSOR REMARK 3 L11: 7.2338 L22: 5.0480 REMARK 3 L33: 1.4779 L12: -2.3785 REMARK 3 L13: -0.5582 L23: -0.7821 REMARK 3 S TENSOR REMARK 3 S11: 0.3227 S12: 0.3208 S13: -0.7677 REMARK 3 S21: -0.2258 S22: -0.3257 S23: 0.6622 REMARK 3 S31: -0.0272 S32: -0.1495 S33: -0.0671 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8320 -9.6594 16.8643 REMARK 3 T TENSOR REMARK 3 T11: 0.3578 T22: 0.4549 REMARK 3 T33: 0.3572 T12: -0.0246 REMARK 3 T13: -0.0902 T23: -0.0542 REMARK 3 L TENSOR REMARK 3 L11: 9.0102 L22: 5.1848 REMARK 3 L33: 2.4997 L12: -5.4779 REMARK 3 L13: -2.6996 L23: 0.9918 REMARK 3 S TENSOR REMARK 3 S11: 0.2571 S12: 0.2406 S13: 0.2016 REMARK 3 S21: -0.0700 S22: -0.2401 S23: 0.1910 REMARK 3 S31: -0.3068 S32: -0.3426 S33: -0.0056 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7149 3.1466 15.0104 REMARK 3 T TENSOR REMARK 3 T11: 0.5926 T22: 0.7624 REMARK 3 T33: 0.9236 T12: 0.1128 REMARK 3 T13: -0.0659 T23: -0.1217 REMARK 3 L TENSOR REMARK 3 L11: 3.5040 L22: 6.8343 REMARK 3 L33: 6.8055 L12: -0.8208 REMARK 3 L13: 1.3379 L23: -2.2543 REMARK 3 S TENSOR REMARK 3 S11: 0.1787 S12: 1.0467 S13: 1.6537 REMARK 3 S21: -0.8886 S22: -1.4467 S23: 0.8117 REMARK 3 S31: -2.0409 S32: 0.0112 S33: -0.0086 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.2310 5.4496 17.8713 REMARK 3 T TENSOR REMARK 3 T11: 0.6006 T22: 1.1562 REMARK 3 T33: 1.6500 T12: 0.2862 REMARK 3 T13: 0.0240 T23: -0.1382 REMARK 3 L TENSOR REMARK 3 L11: 8.5248 L22: 6.9790 REMARK 3 L33: 5.3112 L12: -1.5556 REMARK 3 L13: -0.9209 L23: -5.5182 REMARK 3 S TENSOR REMARK 3 S11: 1.0045 S12: -1.2876 S13: 1.3252 REMARK 3 S21: -0.9479 S22: -0.4200 S23: 1.5520 REMARK 3 S31: -1.0488 S32: -0.8942 S33: -0.3387 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 170 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.5868 12.3658 13.4943 REMARK 3 T TENSOR REMARK 3 T11: 0.9269 T22: 1.3021 REMARK 3 T33: 1.2451 T12: 0.3227 REMARK 3 T13: -0.1122 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 4.8227 L22: 8.5075 REMARK 3 L33: 5.0388 L12: -0.9223 REMARK 3 L13: 0.4355 L23: 0.8522 REMARK 3 S TENSOR REMARK 3 S11: -1.3737 S12: -1.7715 S13: 1.1718 REMARK 3 S21: 0.2288 S22: 0.0259 S23: -1.0984 REMARK 3 S31: -1.7578 S32: -0.9607 S33: -0.2868 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4430 7.7613 47.0922 REMARK 3 T TENSOR REMARK 3 T11: 0.5019 T22: 0.6273 REMARK 3 T33: 0.9235 T12: 0.0645 REMARK 3 T13: -0.0574 T23: 0.0510 REMARK 3 L TENSOR REMARK 3 L11: 5.9447 L22: 5.0816 REMARK 3 L33: 7.6690 L12: 5.4324 REMARK 3 L13: 0.2077 L23: 1.3079 REMARK 3 S TENSOR REMARK 3 S11: 0.3447 S12: -0.5421 S13: -1.6191 REMARK 3 S21: 0.0325 S22: -0.1887 S23: -1.7575 REMARK 3 S31: -0.7572 S32: -0.1818 S33: -0.1747 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3441 9.6997 47.5130 REMARK 3 T TENSOR REMARK 3 T11: 0.5070 T22: 0.4529 REMARK 3 T33: 0.5287 T12: -0.1008 REMARK 3 T13: -0.0345 T23: -0.0280 REMARK 3 L TENSOR REMARK 3 L11: 8.2515 L22: 5.7489 REMARK 3 L33: 0.1860 L12: 1.9667 REMARK 3 L13: -1.0636 L23: 0.1587 REMARK 3 S TENSOR REMARK 3 S11: 0.2891 S12: -0.9192 S13: -0.7391 REMARK 3 S21: 0.5388 S22: -0.6406 S23: -0.7209 REMARK 3 S31: -0.6846 S32: 0.0915 S33: 0.0926 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 56 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7031 4.2355 41.8314 REMARK 3 T TENSOR REMARK 3 T11: 0.3884 T22: 0.4902 REMARK 3 T33: 0.4819 T12: -0.0617 REMARK 3 T13: -0.0100 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 9.1101 L22: 3.6151 REMARK 3 L33: 1.2838 L12: 2.0289 REMARK 3 L13: 0.5710 L23: 2.1074 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: -0.2784 S13: 0.1595 REMARK 3 S21: 0.1341 S22: -0.3240 S23: 0.1478 REMARK 3 S31: 0.2456 S32: -0.2318 S33: 0.2843 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2093 -4.0726 39.8259 REMARK 3 T TENSOR REMARK 3 T11: 0.3885 T22: 0.4768 REMARK 3 T33: 0.8337 T12: 0.0346 REMARK 3 T13: 0.0848 T23: -0.1203 REMARK 3 L TENSOR REMARK 3 L11: 5.7449 L22: 4.3457 REMARK 3 L33: 3.9349 L12: 1.6671 REMARK 3 L13: 1.1487 L23: 4.0279 REMARK 3 S TENSOR REMARK 3 S11: 0.6299 S12: 0.8251 S13: -0.8760 REMARK 3 S21: 0.2955 S22: -0.6520 S23: 0.3116 REMARK 3 S31: 1.0175 S32: 0.3119 S33: -0.0109 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 128 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.7489 -7.9032 34.0419 REMARK 3 T TENSOR REMARK 3 T11: 0.4837 T22: 0.7810 REMARK 3 T33: 0.7965 T12: -0.0878 REMARK 3 T13: 0.1566 T23: -0.1490 REMARK 3 L TENSOR REMARK 3 L11: 2.9067 L22: 4.3682 REMARK 3 L33: 3.4612 L12: 2.2366 REMARK 3 L13: 3.4498 L23: 0.0099 REMARK 3 S TENSOR REMARK 3 S11: 0.2299 S12: -0.3352 S13: 0.3070 REMARK 3 S21: -0.2056 S22: 0.0570 S23: 0.3281 REMARK 3 S31: 0.8794 S32: -1.0835 S33: -0.1671 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 170 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.9224 -22.5853 38.7846 REMARK 3 T TENSOR REMARK 3 T11: 1.5352 T22: 1.2042 REMARK 3 T33: 0.7838 T12: -0.7538 REMARK 3 T13: -0.1395 T23: 0.2088 REMARK 3 L TENSOR REMARK 3 L11: 6.0183 L22: 4.2949 REMARK 3 L33: 5.7932 L12: -3.4621 REMARK 3 L13: 0.5068 L23: -2.1539 REMARK 3 S TENSOR REMARK 3 S11: 0.7659 S12: -1.5967 S13: -0.8187 REMARK 3 S21: 0.8230 S22: -1.5132 S23: 0.1423 REMARK 3 S31: 2.2913 S32: -1.2453 S33: -0.6311 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 3 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5182 4.0587 9.8043 REMARK 3 T TENSOR REMARK 3 T11: 1.1436 T22: 1.0998 REMARK 3 T33: 0.7622 T12: 0.0229 REMARK 3 T13: -0.0653 T23: 0.0594 REMARK 3 L TENSOR REMARK 3 L11: 4.7922 L22: 6.5891 REMARK 3 L33: 6.9010 L12: 0.9231 REMARK 3 L13: -1.5419 L23: -1.1259 REMARK 3 S TENSOR REMARK 3 S11: 0.4778 S12: 1.7423 S13: 0.3663 REMARK 3 S21: 0.0357 S22: 0.8257 S23: 0.5441 REMARK 3 S31: -0.3585 S32: 0.3738 S33: -1.1261 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'Q' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8138 -16.6554 42.6341 REMARK 3 T TENSOR REMARK 3 T11: 0.7727 T22: 0.8134 REMARK 3 T33: 0.8987 T12: -0.1858 REMARK 3 T13: 0.1386 T23: 0.1535 REMARK 3 L TENSOR REMARK 3 L11: 2.5848 L22: 4.2542 REMARK 3 L33: 6.3250 L12: -2.0451 REMARK 3 L13: -0.5983 L23: -3.5308 REMARK 3 S TENSOR REMARK 3 S11: -0.1592 S12: -1.0468 S13: 0.3487 REMARK 3 S21: 0.3033 S22: -1.0149 S23: -0.0533 REMARK 3 S31: 2.1314 S32: -0.0835 S33: 1.4606 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZNP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007388. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12194 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : 0.13600 REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.77000 REMARK 200 R SYM FOR SHELL (I) : 0.77000 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2F6N, 1W4S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM ACETATE, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.17000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.18500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.95450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.18500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.17000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.95450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 188 REMARK 465 SER A 189 REMARK 465 GLU A 190 REMARK 465 GLY A 191 REMARK 465 GLN A 192 REMARK 465 LYS A 193 REMARK 465 LYS A 194 REMARK 465 LEU A 195 REMARK 465 GLN A 196 REMARK 465 ASN A 197 REMARK 465 SER A 198 REMARK 465 HIS A 199 REMARK 465 ASN A 200 REMARK 465 THR A 201 REMARK 465 ARG A 202 REMARK 465 GLN A 203 REMARK 465 SER A 204 REMARK 465 ASP A 205 REMARK 465 ALA A 206 REMARK 465 LYS A 207 REMARK 465 ALA A 208 REMARK 465 GLU A 209 REMARK 465 THR A 210 REMARK 465 LYS A 211 REMARK 465 ARG A 212 REMARK 465 ARG A 213 REMARK 465 ARG A 214 REMARK 465 ARG A 215 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 188 REMARK 465 SER B 189 REMARK 465 GLU B 190 REMARK 465 GLY B 191 REMARK 465 GLN B 192 REMARK 465 LYS B 193 REMARK 465 LYS B 194 REMARK 465 LEU B 195 REMARK 465 GLN B 196 REMARK 465 ASN B 197 REMARK 465 SER B 198 REMARK 465 HIS B 199 REMARK 465 ASN B 200 REMARK 465 THR B 201 REMARK 465 ARG B 202 REMARK 465 GLN B 203 REMARK 465 SER B 204 REMARK 465 ASP B 205 REMARK 465 ALA B 206 REMARK 465 LYS B 207 REMARK 465 ALA B 208 REMARK 465 GLU B 209 REMARK 465 THR B 210 REMARK 465 LYS B 211 REMARK 465 ARG B 212 REMARK 465 ARG B 213 REMARK 465 ARG B 214 REMARK 465 ARG B 215 REMARK 465 ALA P 1 REMARK 465 ARG P 2 REMARK 465 THR P 11 REMARK 465 GLY P 12 REMARK 465 GLY P 13 REMARK 465 LYS P 14 REMARK 465 ALA P 15 REMARK 465 SER Q 10 REMARK 465 THR Q 11 REMARK 465 GLY Q 12 REMARK 465 GLY Q 13 REMARK 465 LYS Q 14 REMARK 465 ALA Q 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 138 -163.18 -124.93 REMARK 500 CYS A 142 -176.29 61.53 REMARK 500 GLU A 158 -75.28 -89.22 REMARK 500 GLU A 170 -18.43 63.81 REMARK 500 HIS A 181 176.64 174.68 REMARK 500 CYS B 142 -171.81 58.99 REMARK 500 PHE B 183 40.98 -141.80 REMARK 500 CYS B 184 -141.48 37.42 REMARK 500 ASN B 186 -124.48 151.25 REMARK 500 GLN Q 5 144.53 -173.88 REMARK 500 ARG Q 8 137.14 -173.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 142 SG REMARK 620 2 CYS A 144 SG 109.0 REMARK 620 3 HIS A 165 ND1 132.4 96.8 REMARK 620 4 CYS A 168 SG 111.1 108.9 96.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 157 SG REMARK 620 2 CYS A 160 SG 100.2 REMARK 620 3 CYS A 184 SG 120.8 70.4 REMARK 620 4 CYS A 187 SG 124.9 125.9 103.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 142 SG REMARK 620 2 CYS B 144 SG 94.5 REMARK 620 3 HIS B 165 ND1 150.3 101.1 REMARK 620 4 CYS B 168 SG 110.5 104.3 90.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 157 SG REMARK 620 2 CYS B 160 N 79.8 REMARK 620 3 CYS B 160 SG 152.7 77.1 REMARK 620 4 CYS B 184 SG 85.7 161.3 113.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 502 DBREF 5ZNP A 1 215 UNP B9H0V2 B9H0V2_POPTR 1 215 DBREF 5ZNP B 1 215 UNP B9H0V2 B9H0V2_POPTR 1 215 DBREF 5ZNP P 1 15 UNP P59226 H32_ARATH 2 16 DBREF 5ZNP Q 1 15 UNP P59226 H32_ARATH 2 16 SEQADV 5ZNP SER A 0 UNP B9H0V2 EXPRESSION TAG SEQADV 5ZNP SER B 0 UNP B9H0V2 EXPRESSION TAG SEQRES 1 A 216 SER MET ALA LYS ALA LYS ALA PRO ARG ARG THR LEU ASP SEQRES 2 A 216 SER TYR THR VAL LYS PRO ILE ASN LYS THR VAL LYS PRO SEQRES 3 A 216 GLY ASP CYS VAL LEU MET ARG PRO SER ASP PRO SER LYS SEQRES 4 A 216 PRO SER TYR VAL ALA LYS ILE GLU ARG ILE GLU SER ASP SEQRES 5 A 216 GLY ARG GLY PRO ASN VAL ARG VAL ARG VAL ARG TRP TYR SEQRES 6 A 216 TYR ARG PRO GLU GLU SER ILE GLY GLY ARG ARG GLN PHE SEQRES 7 A 216 HIS GLY SER LYS GLU VAL PHE LEU SER ASP HIS TYR ASP SEQRES 8 A 216 THR GLN SER ALA ASP THR ILE GLU GLY LYS CYS MET VAL SEQRES 9 A 216 HIS SER PHE LYS ASN TYR THR LYS LEU ASP ALA VAL GLY SEQRES 10 A 216 ASN ASP ASP PHE PHE CYS ARG PHE GLU TYR ASN SER SER SEQRES 11 A 216 THR GLY ALA PHE ASN PRO ASP ARG VAL ALA VAL TYR CYS SEQRES 12 A 216 LYS CYS GLU MET PRO TYR ASN PRO ASP ASP LEU MET VAL SEQRES 13 A 216 GLN CYS GLU GLY CYS SER ASP TRP PHE HIS PRO ALA CYS SEQRES 14 A 216 ILE GLU MET SER ALA GLU GLU ALA LYS ARG LEU ASP HIS SEQRES 15 A 216 PHE PHE CYS GLU ASN CYS SER SER GLU GLY GLN LYS LYS SEQRES 16 A 216 LEU GLN ASN SER HIS ASN THR ARG GLN SER ASP ALA LYS SEQRES 17 A 216 ALA GLU THR LYS ARG ARG ARG ARG SEQRES 1 B 216 SER MET ALA LYS ALA LYS ALA PRO ARG ARG THR LEU ASP SEQRES 2 B 216 SER TYR THR VAL LYS PRO ILE ASN LYS THR VAL LYS PRO SEQRES 3 B 216 GLY ASP CYS VAL LEU MET ARG PRO SER ASP PRO SER LYS SEQRES 4 B 216 PRO SER TYR VAL ALA LYS ILE GLU ARG ILE GLU SER ASP SEQRES 5 B 216 GLY ARG GLY PRO ASN VAL ARG VAL ARG VAL ARG TRP TYR SEQRES 6 B 216 TYR ARG PRO GLU GLU SER ILE GLY GLY ARG ARG GLN PHE SEQRES 7 B 216 HIS GLY SER LYS GLU VAL PHE LEU SER ASP HIS TYR ASP SEQRES 8 B 216 THR GLN SER ALA ASP THR ILE GLU GLY LYS CYS MET VAL SEQRES 9 B 216 HIS SER PHE LYS ASN TYR THR LYS LEU ASP ALA VAL GLY SEQRES 10 B 216 ASN ASP ASP PHE PHE CYS ARG PHE GLU TYR ASN SER SER SEQRES 11 B 216 THR GLY ALA PHE ASN PRO ASP ARG VAL ALA VAL TYR CYS SEQRES 12 B 216 LYS CYS GLU MET PRO TYR ASN PRO ASP ASP LEU MET VAL SEQRES 13 B 216 GLN CYS GLU GLY CYS SER ASP TRP PHE HIS PRO ALA CYS SEQRES 14 B 216 ILE GLU MET SER ALA GLU GLU ALA LYS ARG LEU ASP HIS SEQRES 15 B 216 PHE PHE CYS GLU ASN CYS SER SER GLU GLY GLN LYS LYS SEQRES 16 B 216 LEU GLN ASN SER HIS ASN THR ARG GLN SER ASP ALA LYS SEQRES 17 B 216 ALA GLU THR LYS ARG ARG ARG ARG SEQRES 1 P 15 ALA ARG THR M3L GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 P 15 LYS ALA SEQRES 1 Q 15 ALA ARG THR M3L GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 Q 15 LYS ALA MODRES 5ZNP M3L P 4 LYS MODIFIED RESIDUE MODRES 5ZNP M3L Q 4 LYS MODIFIED RESIDUE HET M3L P 4 12 HET M3L Q 4 12 HET ZN A 501 1 HET ZN A 502 1 HET ZN B 501 1 HET ZN B 502 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM ZN ZINC ION FORMUL 3 M3L 2(C9 H21 N2 O2 1+) FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *22(H2 O) HELIX 1 AA1 ARG A 66 SER A 70 5 5 HELIX 2 AA2 PHE A 106 LYS A 111 1 6 HELIX 3 AA3 PRO A 166 GLU A 170 5 5 HELIX 4 AA4 ARG B 66 SER B 70 5 5 HELIX 5 AA5 PHE B 106 LYS B 111 1 6 HELIX 6 AA6 HIS B 165 ILE B 169 5 5 HELIX 7 AA7 SER B 172 LEU B 179 1 8 SHEET 1 AA1 6 ARG A 9 THR A 10 0 SHEET 2 AA1 6 TYR A 41 ASP A 51 -1 O SER A 50 N ARG A 9 SHEET 3 AA1 6 CYS A 28 MET A 31 -1 N MET A 31 O TYR A 41 SHEET 4 AA1 6 ILE A 97 SER A 105 -1 O GLY A 99 N LEU A 30 SHEET 5 AA1 6 ASP A 119 TYR A 126 1 O PHE A 120 N HIS A 104 SHEET 6 AA1 6 PHE A 133 ASN A 134 -1 O ASN A 134 N GLU A 125 SHEET 1 AA2 6 ARG A 9 THR A 10 0 SHEET 2 AA2 6 TYR A 41 ASP A 51 -1 O SER A 50 N ARG A 9 SHEET 3 AA2 6 ASN A 56 TYR A 65 -1 O ARG A 58 N GLU A 49 SHEET 4 AA2 6 GLU A 82 SER A 93 -1 O GLN A 92 N VAL A 59 SHEET 5 AA2 6 ASP A 119 TYR A 126 1 O TYR A 126 N LEU A 85 SHEET 6 AA2 6 PHE A 133 ASN A 134 -1 O ASN A 134 N GLU A 125 SHEET 1 AA3 2 TYR A 14 VAL A 16 0 SHEET 2 AA3 2 LYS A 21 VAL A 23 -1 O VAL A 23 N TYR A 14 SHEET 1 AA4 2 VAL A 140 TYR A 141 0 SHEET 2 AA4 2 MET A 146 PRO A 147 -1 O MET A 146 N TYR A 141 SHEET 1 AA5 2 VAL A 155 GLN A 156 0 SHEET 2 AA5 2 TRP A 163 PHE A 164 -1 O PHE A 164 N VAL A 155 SHEET 1 AA6 5 ARG B 9 LEU B 11 0 SHEET 2 AA6 5 TYR B 41 ASP B 51 -1 O SER B 50 N ARG B 9 SHEET 3 AA6 5 CYS B 28 MET B 31 -1 N VAL B 29 O ALA B 43 SHEET 4 AA6 5 ILE B 97 SER B 105 -1 O GLY B 99 N LEU B 30 SHEET 5 AA6 5 ASP B 119 CYS B 122 1 O PHE B 120 N HIS B 104 SHEET 1 AA7 6 ARG B 9 LEU B 11 0 SHEET 2 AA7 6 TYR B 41 ASP B 51 -1 O SER B 50 N ARG B 9 SHEET 3 AA7 6 ASN B 56 TYR B 65 -1 O ARG B 58 N GLU B 49 SHEET 4 AA7 6 PHE B 84 SER B 93 -1 O HIS B 88 N TRP B 63 SHEET 5 AA7 6 GLU B 125 TYR B 126 1 O TYR B 126 N LEU B 85 SHEET 6 AA7 6 PHE B 133 ASN B 134 -1 O ASN B 134 N GLU B 125 SHEET 1 AA8 2 TYR B 14 THR B 15 0 SHEET 2 AA8 2 THR B 22 VAL B 23 -1 O VAL B 23 N TYR B 14 SHEET 1 AA9 2 VAL B 140 TYR B 141 0 SHEET 2 AA9 2 MET B 146 PRO B 147 -1 O MET B 146 N TYR B 141 SHEET 1 AB1 3 TRP B 163 PHE B 164 0 SHEET 2 AB1 3 MET B 154 GLN B 156 -1 N VAL B 155 O PHE B 164 SHEET 3 AB1 3 THR Q 3 M3L Q 4 -1 O M3L Q 4 N MET B 154 LINK C THR P 3 N M3L P 4 1555 1555 1.33 LINK C M3L P 4 N GLN P 5 1555 1555 1.33 LINK C THR Q 3 N M3L Q 4 1555 1555 1.33 LINK C M3L Q 4 N GLN Q 5 1555 1555 1.33 LINK SG CYS A 142 ZN ZN A 501 1555 1555 2.43 LINK SG CYS A 144 ZN ZN A 501 1555 1555 2.53 LINK SG CYS A 157 ZN ZN A 502 1555 1555 2.72 LINK SG CYS A 160 ZN ZN A 502 1555 1555 2.93 LINK ND1 HIS A 165 ZN ZN A 501 1555 1555 2.45 LINK SG CYS A 168 ZN ZN A 501 1555 1555 2.47 LINK SG CYS A 184 ZN ZN A 502 1555 1555 2.59 LINK SG CYS A 187 ZN ZN A 502 1555 1555 2.65 LINK SG CYS B 142 ZN ZN B 501 1555 1555 2.61 LINK SG CYS B 144 ZN ZN B 501 1555 1555 2.50 LINK SG CYS B 157 ZN ZN B 502 1555 1555 2.89 LINK N CYS B 160 ZN ZN B 502 1555 1555 2.63 LINK SG CYS B 160 ZN ZN B 502 1555 1555 2.46 LINK ND1 HIS B 165 ZN ZN B 501 1555 1555 2.23 LINK SG CYS B 168 ZN ZN B 501 1555 1555 2.78 LINK SG CYS B 184 ZN ZN B 502 1555 1555 2.32 CISPEP 1 GLY A 54 PRO A 55 0 -2.29 CISPEP 2 ASN A 134 PRO A 135 0 3.34 CISPEP 3 GLY B 54 PRO B 55 0 -10.96 CISPEP 4 ASN B 134 PRO B 135 0 1.04 SITE 1 AC1 4 CYS A 142 CYS A 144 HIS A 165 CYS A 168 SITE 1 AC2 4 CYS A 157 CYS A 160 CYS A 184 CYS A 187 SITE 1 AC3 4 CYS B 142 CYS B 144 HIS B 165 CYS B 168 SITE 1 AC4 4 CYS B 157 CYS B 160 CYS B 184 CYS B 187 CRYST1 44.340 91.909 114.370 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022553 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008744 0.00000