HEADER HYDROLASE 12-APR-18 5ZO3 TITLE APO FORM OF THE NUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE 3'-5' EXONUCLEASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEASE; COMPND 5 EC: 3.1.13.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM FABRUM STR. J-07; SOURCE 3 ORGANISM_TAXID: 1183433; SOURCE 4 GENE: AGR8A_LC10769; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.L.YUAN,L.C.GU REVDAT 2 27-MAR-24 5ZO3 1 REMARK REVDAT 1 10-APR-19 5ZO3 0 JRNL AUTH Z.YUAN,F.GAO,K.YIN,L.GU JRNL TITL NRNC, AN RNASE D-LIKE PROTEIN FROMAGROBACTERIUM, IS A NOVEL JRNL TITL 2 OCTAMERIC NUCLEASE THAT SPECIFICALLY DEGRADES DSDNA BUT JRNL TITL 3 LEAVES DSRNA INTACT. JRNL REF FRONT MICROBIOL V. 9 3230 2018 JRNL REFN ESSN 1664-302X JRNL PMID 30666241 JRNL DOI 10.3389/FMICB.2018.03230 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3092: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 80477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.490 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.4704 - 3.5976 1.00 5910 150 0.1565 0.1708 REMARK 3 2 3.5976 - 2.8559 1.00 5689 145 0.1591 0.1579 REMARK 3 3 2.8559 - 2.4950 1.00 5670 145 0.1634 0.1883 REMARK 3 4 2.4950 - 2.2670 1.00 5616 143 0.1636 0.1561 REMARK 3 5 2.2670 - 2.1045 1.00 5599 143 0.1484 0.1776 REMARK 3 6 2.1045 - 1.9804 1.00 5595 142 0.1472 0.1551 REMARK 3 7 1.9804 - 1.8813 1.00 5567 142 0.1515 0.1947 REMARK 3 8 1.8813 - 1.7994 1.00 5585 143 0.1586 0.2102 REMARK 3 9 1.7994 - 1.7301 1.00 5543 141 0.1531 0.1742 REMARK 3 10 1.7301 - 1.6704 1.00 5568 142 0.1510 0.1860 REMARK 3 11 1.6704 - 1.6182 1.00 5546 141 0.1490 0.1468 REMARK 3 12 1.6182 - 1.5719 1.00 5536 142 0.1490 0.2107 REMARK 3 13 1.5719 - 1.5305 1.00 5532 141 0.1531 0.1751 REMARK 3 14 1.5305 - 1.4932 1.00 5521 140 0.1615 0.1970 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3353 REMARK 3 ANGLE : 0.829 4549 REMARK 3 CHIRALITY : 0.078 516 REMARK 3 PLANARITY : 0.006 590 REMARK 3 DIHEDRAL : 2.803 1952 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZO3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80479 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 34.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 50.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, PH 8.0, 1 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 60.62850 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 60.62850 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.94900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 60.62850 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 60.62850 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.94900 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 60.62850 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 60.62850 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.94900 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 60.62850 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 60.62850 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.94900 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 60.62850 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.62850 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.94900 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 60.62850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 60.62850 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.94900 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 60.62850 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 60.62850 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.94900 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 60.62850 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 60.62850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.94900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -153.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 458 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 509 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 64 76.44 -155.90 REMARK 500 ALA B 64 77.81 -160.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 736 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 737 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 738 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 739 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A 740 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 741 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A 742 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A 743 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A 744 DISTANCE = 8.45 ANGSTROMS REMARK 525 HOH B 730 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B 731 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 732 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH B 733 DISTANCE = 6.87 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 DBREF1 5ZO3 A 1 208 UNP A0A1S7QSB2_9RHIZ DBREF2 5ZO3 A A0A1S7QSB2 1 208 DBREF1 5ZO3 B 1 208 UNP A0A1S7QSB2_9RHIZ DBREF2 5ZO3 B A0A1S7QSB2 1 208 SEQADV 5ZO3 GLY A -3 UNP A0A1S7QSB EXPRESSION TAG SEQADV 5ZO3 PRO A -2 UNP A0A1S7QSB EXPRESSION TAG SEQADV 5ZO3 GLY A -1 UNP A0A1S7QSB EXPRESSION TAG SEQADV 5ZO3 SER A 0 UNP A0A1S7QSB EXPRESSION TAG SEQADV 5ZO3 GLY B -3 UNP A0A1S7QSB EXPRESSION TAG SEQADV 5ZO3 PRO B -2 UNP A0A1S7QSB EXPRESSION TAG SEQADV 5ZO3 GLY B -1 UNP A0A1S7QSB EXPRESSION TAG SEQADV 5ZO3 SER B 0 UNP A0A1S7QSB EXPRESSION TAG SEQRES 1 A 212 GLY PRO GLY SER MET ALA ALA THR ILE ARG TYR HIS GLU SEQRES 2 A 212 GLY ASP ILE SER ALA GLU ASP ALA ALA ARG TYR LYS GLY SEQRES 3 A 212 ALA ILE ALA ILE ASP THR GLU THR LEU GLY LEU VAL PRO SEQRES 4 A 212 ARG ARG ASP ARG LEU CYS VAL VAL GLN LEU SER SER GLY SEQRES 5 A 212 ASP GLY THR ALA ASP VAL ILE ARG ILE ALA ALA GLY GLN SEQRES 6 A 212 LYS GLN ALA PRO ASN LEU VAL HIS MET LEU ALA ASP PRO SEQRES 7 A 212 ALA ARG GLN LYS ILE PHE HIS TYR GLY ARG PHE ASP ILE SEQRES 8 A 212 ALA VAL LEU PHE HIS THR PHE GLY VAL THR THR THR PRO SEQRES 9 A 212 VAL PHE CYS THR LYS ILE ALA SER ARG LEU CYS ARG THR SEQRES 10 A 212 TYR THR ASP ARG HIS GLY LEU LYS ASP ASN LEU LYS GLU SEQRES 11 A 212 MET LEU GLU VAL ASP ILE SER LYS ALA GLN GLN SER SER SEQRES 12 A 212 ASP TRP ALA ALA GLU THR LEU SER PRO ALA GLN LEU GLU SEQRES 13 A 212 TYR ALA ALA SER ASP VAL LEU TYR LEU HIS ALA LEU ARG SEQRES 14 A 212 ASP LYS LEU THR ALA ARG LEU ILE ARG ASP GLY ARG ILE SEQRES 15 A 212 GLU HIS ALA ASP ALA CYS PHE ALA PHE LEU PRO THR ARG SEQRES 16 A 212 ALA LYS LEU ASP LEU LEU GLY TRP ASP GLU THR ASP ILE SEQRES 17 A 212 PHE ALA HIS SER SEQRES 1 B 212 GLY PRO GLY SER MET ALA ALA THR ILE ARG TYR HIS GLU SEQRES 2 B 212 GLY ASP ILE SER ALA GLU ASP ALA ALA ARG TYR LYS GLY SEQRES 3 B 212 ALA ILE ALA ILE ASP THR GLU THR LEU GLY LEU VAL PRO SEQRES 4 B 212 ARG ARG ASP ARG LEU CYS VAL VAL GLN LEU SER SER GLY SEQRES 5 B 212 ASP GLY THR ALA ASP VAL ILE ARG ILE ALA ALA GLY GLN SEQRES 6 B 212 LYS GLN ALA PRO ASN LEU VAL HIS MET LEU ALA ASP PRO SEQRES 7 B 212 ALA ARG GLN LYS ILE PHE HIS TYR GLY ARG PHE ASP ILE SEQRES 8 B 212 ALA VAL LEU PHE HIS THR PHE GLY VAL THR THR THR PRO SEQRES 9 B 212 VAL PHE CYS THR LYS ILE ALA SER ARG LEU CYS ARG THR SEQRES 10 B 212 TYR THR ASP ARG HIS GLY LEU LYS ASP ASN LEU LYS GLU SEQRES 11 B 212 MET LEU GLU VAL ASP ILE SER LYS ALA GLN GLN SER SER SEQRES 12 B 212 ASP TRP ALA ALA GLU THR LEU SER PRO ALA GLN LEU GLU SEQRES 13 B 212 TYR ALA ALA SER ASP VAL LEU TYR LEU HIS ALA LEU ARG SEQRES 14 B 212 ASP LYS LEU THR ALA ARG LEU ILE ARG ASP GLY ARG ILE SEQRES 15 B 212 GLU HIS ALA ASP ALA CYS PHE ALA PHE LEU PRO THR ARG SEQRES 16 B 212 ALA LYS LEU ASP LEU LEU GLY TRP ASP GLU THR ASP ILE SEQRES 17 B 212 PHE ALA HIS SER HET EDO A 301 4 HET EDO A 302 4 HET SO4 A 303 5 HET SO4 B 301 5 HET SO4 B 302 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *677(H2 O) HELIX 1 AA1 SER A 13 ALA A 18 1 6 HELIX 2 AA2 ALA A 64 ASP A 73 1 10 HELIX 3 AA3 TYR A 82 GLY A 95 1 14 HELIX 4 AA4 THR A 104 ARG A 112 1 9 HELIX 5 AA5 GLY A 119 GLU A 129 1 11 HELIX 6 AA6 SER A 147 TYR A 160 1 14 HELIX 7 AA7 TYR A 160 ASP A 175 1 16 HELIX 8 AA8 ARG A 177 GLY A 198 1 22 HELIX 9 AA9 SER B 13 ALA B 18 1 6 HELIX 10 AB1 ALA B 64 ASP B 73 1 10 HELIX 11 AB2 TYR B 82 GLY B 95 1 14 HELIX 12 AB3 THR B 104 ARG B 112 1 9 HELIX 13 AB4 GLY B 119 GLU B 129 1 11 HELIX 14 AB5 SER B 147 ASP B 157 1 11 HELIX 15 AB6 TYR B 160 ASP B 175 1 16 HELIX 16 AB7 ARG B 177 LEU B 197 1 21 SHEET 1 AA1 6 ILE A 5 GLU A 9 0 SHEET 2 AA1 6 ALA A 52 ARG A 56 1 O ALA A 52 N ARG A 6 SHEET 3 AA1 6 LEU A 40 SER A 46 -1 N VAL A 43 O ILE A 55 SHEET 4 AA1 6 ILE A 24 THR A 30 -1 N GLU A 29 O CYS A 41 SHEET 5 AA1 6 LYS A 78 PHE A 80 1 O ILE A 79 N ILE A 24 SHEET 6 AA1 6 VAL A 101 CYS A 103 1 O PHE A 102 N PHE A 80 SHEET 1 AA2 6 ILE B 5 GLU B 9 0 SHEET 2 AA2 6 ALA B 52 ARG B 56 1 O ALA B 52 N ARG B 6 SHEET 3 AA2 6 LEU B 40 SER B 46 -1 N VAL B 43 O ILE B 55 SHEET 4 AA2 6 ILE B 24 THR B 30 -1 N GLU B 29 O CYS B 41 SHEET 5 AA2 6 LYS B 78 PHE B 80 1 O ILE B 79 N ILE B 26 SHEET 6 AA2 6 VAL B 101 CYS B 103 1 O PHE B 102 N PHE B 80 CISPEP 1 THR A 99 PRO A 100 0 -9.07 CISPEP 2 THR B 99 PRO B 100 0 -11.35 SITE 1 AC1 8 GLY A 48 GLY A 50 LEU A 159 TYR A 160 SITE 2 AC1 8 ALA A 163 HOH A 465 HOH A 483 HOH A 488 SITE 1 AC2 8 ARG A 19 TYR A 20 LYS A 21 GLY A 22 SITE 2 AC2 8 ALA A 23 SER A 47 HOH A 500 HOH A 579 SITE 1 AC3 5 GLY A 22 ALA A 23 ARG A 165 HOH A 457 SITE 2 AC3 5 HOH A 556 SITE 1 AC4 5 ALA B 23 HIS B 162 ARG B 165 HOH B 403 SITE 2 AC4 5 HOH B 436 SITE 1 AC5 5 SER B 13 ALA B 14 ASN B 66 HOH B 527 SITE 2 AC5 5 HOH B 589 CRYST1 121.257 121.257 133.898 90.00 90.00 90.00 I 4 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008247 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007468 0.00000