HEADER TRANSFERASE/RNA 17-APR-18 5ZQ0 TITLE CRYSTAL STRUCTURE OF SPRLMCD WITH U747LOOP RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED RNA METHYLTRANSFERASE SP_1029; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(*GP*UP*(MUM)P*GP*AP*AP*AP*A)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE SEROTYPE 4 (STRAIN SOURCE 3 ATCC BAA-334 / TIGR4); SOURCE 4 ORGANISM_TAXID: 170187; SOURCE 5 STRAIN: ATCC BAA-334 / TIGR4; SOURCE 6 GENE: SP_1029; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE TIGR4; SOURCE 12 ORGANISM_TAXID: 170187 KEYWDS METHYLTRANSFERASE, RIBOSOME, 23S RNA, STREPTOCOCCUS PNEUMONIAE, KEYWDS 2 TRANSFERASE, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.Y.JIANG,H.L.YU REVDAT 3 22-NOV-23 5ZQ0 1 REMARK REVDAT 2 14-NOV-18 5ZQ0 1 JRNL REVDAT 1 24-OCT-18 5ZQ0 0 JRNL AUTH Y.JIANG,H.YU,F.LI,L.CHENG,L.ZHU,Y.SHI,Q.GONG JRNL TITL UNVEILING THE STRUCTURAL FEATURES THAT DETERMINE THE DUAL JRNL TITL 2 METHYLTRANSFERASE ACTIVITIES OF STREPTOCOCCUS PNEUMONIAE JRNL TITL 3 RLMCD JRNL REF PLOS PATHOG. V. 14 07379 2018 JRNL REFN ESSN 1553-7374 JRNL PMID 30388185 JRNL DOI 10.1371/JOURNAL.PPAT.1007379 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 34074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1808 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2446 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3608 REMARK 3 NUCLEIC ACID ATOMS : 172 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 204 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.204 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3911 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3646 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5324 ; 1.359 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8476 ; 0.935 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 456 ; 6.532 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;33.418 ;25.088 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 685 ;12.900 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;16.969 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 610 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4177 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 740 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5ZQ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007472. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35944 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5XJ1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 36%(W/V) PEG600, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.70600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.10400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.90450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.10400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.70600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.90450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U B 746 O3' MUM B 747 P -0.104 REMARK 500 MUM B 747 O3' G B 748 P -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U B 746 C3' - O3' - P ANGL. DEV. = 15.1 DEGREES REMARK 500 MUM B 747 C3' - O3' - P ANGL. DEV. = 15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 5 -13.66 79.76 REMARK 500 SER A 38 -6.54 80.10 REMARK 500 PHE A 160 -55.18 71.13 REMARK 500 PHE A 220 109.36 -45.41 REMARK 500 GLN A 374 74.53 -116.02 REMARK 500 GLN A 438 -12.60 78.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 789 DISTANCE = 5.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XJ1 RELATED DB: PDB DBREF 5ZQ0 A 1 452 UNP Q97R12 Y1029_STRPN 1 452 DBREF 5ZQ0 B 745 752 PDB 5ZQ0 5ZQ0 745 752 SEQADV 5ZQ0 MET A 0 UNP Q97R12 INITIATING METHIONINE SEQADV 5ZQ0 GLN A 443 UNP Q97R12 GLU 443 ENGINEERED MUTATION SEQRES 1 A 453 MET MET LEU LYS LYS ASN ASP ILE VAL GLU VAL GLU ILE SEQRES 2 A 453 VAL ASP LEU THR HIS GLU GLY ALA GLY VAL ALA LYS VAL SEQRES 3 A 453 ASP GLY LEU VAL PHE PHE VAL GLU ASN ALA LEU PRO SER SEQRES 4 A 453 GLU LYS ILE LEU MET ARG VAL LEU LYS VAL ASN LYS LYS SEQRES 5 A 453 ILE GLY PHE GLY LYS VAL GLU LYS TYR LEU VAL GLN SER SEQRES 6 A 453 PRO HIS ARG ASN GLN ASP LEU ASP LEU ALA TYR LEU ARG SEQRES 7 A 453 SER GLY ILE ALA ASP LEU GLY HIS LEU SER TYR PRO GLU SEQRES 8 A 453 GLN LEU LYS PHE LYS THR LYS GLN VAL LYS ASP SER LEU SEQRES 9 A 453 TYR LYS ILE ALA GLY ILE ALA ASP VAL GLU VAL ALA GLU SEQRES 10 A 453 THR LEU GLY MET GLU HIS PRO VAL LYS TYR ARG ASN LYS SEQRES 11 A 453 ALA GLN VAL PRO VAL ARG ARG VAL ASN GLY VAL LEU GLU SEQRES 12 A 453 THR GLY PHE PHE ARG LYS ASN SER HIS ASN LEU MET PRO SEQRES 13 A 453 LEU GLU ASP PHE PHE ILE GLN ASP PRO VAL ILE ASP GLN SEQRES 14 A 453 VAL VAL VAL ALA LEU ARG ASP LEU LEU ARG ARG PHE ASP SEQRES 15 A 453 LEU LYS PRO TYR ASP GLU LYS GLU GLN SER GLY LEU ILE SEQRES 16 A 453 ARG ASN LEU VAL VAL ARG ARG GLY HIS TYR SER GLY GLN SEQRES 17 A 453 ILE MET VAL VAL LEU VAL THR THR ARG PRO LYS VAL PHE SEQRES 18 A 453 ARG VAL ASP GLN LEU ILE GLU GLN VAL ILE LYS GLN PHE SEQRES 19 A 453 PRO GLU ILE VAL SER VAL MET GLN ASN ILE ASN ASP GLN SEQRES 20 A 453 ASN THR ASN ALA ILE PHE GLY LYS GLU TRP ARG THR LEU SEQRES 21 A 453 TYR GLY GLN ASP TYR ILE THR ASP GLN MET LEU GLY ASN SEQRES 22 A 453 ASP PHE GLN ILE ALA GLY PRO ALA PHE TYR GLN VAL ASN SEQRES 23 A 453 THR GLU MET ALA GLU LYS LEU TYR GLN THR ALA ILE ASP SEQRES 24 A 453 PHE ALA GLU LEU LYS LYS ASP ASP VAL ILE ILE ASP ALA SEQRES 25 A 453 TYR SER GLY ILE GLY THR ILE GLY LEU SER VAL ALA LYS SEQRES 26 A 453 HIS VAL LYS GLU VAL TYR GLY VAL GLU LEU ILE PRO GLU SEQRES 27 A 453 ALA VAL GLU ASN SER GLN LYS ASN ALA SER LEU ASN LYS SEQRES 28 A 453 ILE THR ASN ALA HIS TYR VAL CYS ASP THR ALA GLU ASN SEQRES 29 A 453 ALA MET LYS LYS TRP LEU LYS GLU GLY ILE GLN PRO THR SEQRES 30 A 453 VAL ILE LEU VAL ASP PRO PRO ARG LYS GLY LEU THR GLU SEQRES 31 A 453 SER PHE ILE LYS ALA SER ALA GLN THR GLY ALA ASP ARG SEQRES 32 A 453 ILE ALA TYR ILE SER CYS ASN VAL ALA THR MET ALA ARG SEQRES 33 A 453 ASP ILE LYS LEU TYR GLN GLU LEU GLY TYR GLU LEU LYS SEQRES 34 A 453 LYS VAL GLN PRO VAL ASP LEU PHE PRO GLN THR HIS HIS SEQRES 35 A 453 VAL GLN THR VAL ALA LEU LEU SER LYS LEU ASP SEQRES 1 B 8 G U MUM G A A A A HET MUM B 747 21 HET SAH A 501 26 HETNAM MUM 5'-O-(DIHYDROXYPHOSPHANYL)-5-METHYL-5,6-DIHYDROURIDINE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 2 MUM C10 H17 N2 O8 P FORMUL 3 SAH C14 H20 N6 O5 S FORMUL 4 HOH *204(H2 O) HELIX 1 AA1 ASP A 72 SER A 78 1 7 HELIX 2 AA2 SER A 87 GLY A 108 1 22 HELIX 3 AA3 ASP A 163 PHE A 180 1 18 HELIX 4 AA4 ARG A 221 PHE A 233 1 13 HELIX 5 AA5 ASN A 285 GLU A 301 1 17 HELIX 6 AA6 GLY A 316 ALA A 323 1 8 HELIX 7 AA7 LYS A 324 VAL A 326 5 3 HELIX 8 AA8 ILE A 335 ASN A 349 1 15 HELIX 9 AA9 THR A 360 GLY A 372 1 13 HELIX 10 AB1 THR A 388 THR A 398 1 11 HELIX 11 AB2 ASN A 409 LEU A 423 1 15 SHEET 1 AA1 6 ILE A 7 GLU A 11 0 SHEET 2 AA1 6 LYS A 40 VAL A 48 -1 O MET A 43 N VAL A 8 SHEET 3 AA1 6 ILE A 52 VAL A 62 -1 O PHE A 54 N LEU A 46 SHEET 4 AA1 6 LEU A 28 VAL A 32 1 N PHE A 31 O GLY A 55 SHEET 5 AA1 6 GLY A 21 VAL A 25 -1 N ALA A 23 O PHE A 30 SHEET 6 AA1 6 ASP A 14 LEU A 15 -1 N ASP A 14 O VAL A 22 SHEET 1 AA2 7 LEU A 153 PRO A 155 0 SHEET 2 AA2 7 VAL A 140 PHE A 146 -1 N PHE A 145 O MET A 154 SHEET 3 AA2 7 LYS A 129 VAL A 137 -1 N VAL A 137 O VAL A 140 SHEET 4 AA2 7 ILE A 194 ARG A 201 -1 O LEU A 197 N VAL A 132 SHEET 5 AA2 7 ILE A 208 THR A 214 -1 O VAL A 211 N VAL A 198 SHEET 6 AA2 7 ILE A 236 ILE A 243 1 O MET A 240 N VAL A 210 SHEET 7 AA2 7 GLU A 255 GLY A 261 -1 O ARG A 257 N GLN A 241 SHEET 1 AA3 2 ILE A 265 MET A 269 0 SHEET 2 AA3 2 ASN A 272 ILE A 276 -1 O PHE A 274 N ASP A 267 SHEET 1 AA4 7 ALA A 354 CYS A 358 0 SHEET 2 AA4 7 GLU A 328 GLU A 333 1 N VAL A 329 O HIS A 355 SHEET 3 AA4 7 VAL A 307 ALA A 311 1 N ASP A 310 O TYR A 330 SHEET 4 AA4 7 VAL A 377 VAL A 380 1 O LEU A 379 N ILE A 309 SHEET 5 AA4 7 ARG A 402 SER A 407 1 O ILE A 406 N VAL A 380 SHEET 6 AA4 7 GLN A 443 LYS A 450 -1 O LEU A 448 N ILE A 403 SHEET 7 AA4 7 TYR A 425 VAL A 433 -1 N LYS A 428 O LEU A 447 LINK SG CYS A 408 C6 MUM B 747 1555 1555 1.69 LINK O3' U B 746 P MUM B 747 1555 1555 1.50 LINK O3' MUM B 747 P G B 748 1555 1555 1.51 SITE 1 AC1 21 PHE A 281 GLN A 283 TYR A 293 TYR A 312 SITE 2 AC1 21 SER A 313 GLY A 314 THR A 317 ILE A 318 SITE 3 AC1 21 GLU A 333 LEU A 334 ILE A 335 ASP A 359 SITE 4 AC1 21 THR A 360 ALA A 361 ASP A 381 HOH A 614 SITE 5 AC1 21 HOH A 620 HOH A 636 HOH A 640 HOH A 687 SITE 6 AC1 21 MUM B 747 CRYST1 47.412 95.809 114.208 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021092 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008756 0.00000