data_5ZQ1 # _entry.id 5ZQ1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5ZQ1 pdb_00005zq1 10.2210/pdb5zq1/pdb WWPDB D_1300007470 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 5XJ1 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5ZQ1 _pdbx_database_status.recvd_initial_deposition_date 2018-04-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yu, H.L.' 1 ? 'Jiang, Y.Y.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'PLoS Pathog.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1553-7374 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first e1007379 _citation.page_last e1007379 _citation.title 'Unveiling the structural features that determine the dual methyltransferase activities of Streptococcus pneumoniae RlmCD' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1371/journal.ppat.1007379 _citation.pdbx_database_id_PubMed 30388185 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jiang, Y.' 1 ? primary 'Yu, H.' 2 ? primary 'Li, F.' 3 ? primary 'Cheng, L.' 4 ? primary 'Zhu, L.' 5 ? primary 'Shi, Y.' 6 ? primary 'Gong, Q.' 7 0000-0002-3034-6008 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5ZQ1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 47.386 _cell.length_a_esd ? _cell.length_b 96.097 _cell.length_b_esd ? _cell.length_c 114.162 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZQ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized RNA methyltransferase SP_1029' 51171.832 1 2.1.1.- E443Q ? ? 2 polymer syn ;RNA (5'-R(*AP*AP*AP*(MUM)P*UP*CP*CP*U)-3') ; 2471.564 1 ? ? ? ? 3 non-polymer syn S-ADENOSYL-L-HOMOCYSTEINE 384.411 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MLKKNDIVEVEIVDLTHEGAGVAKVDGLVFFVENALPSEKILMRVLKVNKKIGFGKVEKYLVQSPHRNQDLDLAYLRSGI ADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFF IQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRGHYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVM QNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGL SVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKKWLKEGIQPTVILVDPPRKGLTESFIKASAQTGA DRIAYISCNVATMARDIKLYQELGYELKKVQPVDLFPQTHHVQTVALLSKLD ; ;MLKKNDIVEVEIVDLTHEGAGVAKVDGLVFFVENALPSEKILMRVLKVNKKIGFGKVEKYLVQSPHRNQDLDLAYLRSGI ADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFF IQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRGHYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVM QNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGL SVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKKWLKEGIQPTVILVDPPRKGLTESFIKASAQTGA DRIAYISCNVATMARDIKLYQELGYELKKVQPVDLFPQTHHVQTVALLSKLD ; A ? 2 polyribonucleotide no yes 'AAA(MUM)UCCU' AAAXUCCU B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 LYS n 1 4 LYS n 1 5 ASN n 1 6 ASP n 1 7 ILE n 1 8 VAL n 1 9 GLU n 1 10 VAL n 1 11 GLU n 1 12 ILE n 1 13 VAL n 1 14 ASP n 1 15 LEU n 1 16 THR n 1 17 HIS n 1 18 GLU n 1 19 GLY n 1 20 ALA n 1 21 GLY n 1 22 VAL n 1 23 ALA n 1 24 LYS n 1 25 VAL n 1 26 ASP n 1 27 GLY n 1 28 LEU n 1 29 VAL n 1 30 PHE n 1 31 PHE n 1 32 VAL n 1 33 GLU n 1 34 ASN n 1 35 ALA n 1 36 LEU n 1 37 PRO n 1 38 SER n 1 39 GLU n 1 40 LYS n 1 41 ILE n 1 42 LEU n 1 43 MET n 1 44 ARG n 1 45 VAL n 1 46 LEU n 1 47 LYS n 1 48 VAL n 1 49 ASN n 1 50 LYS n 1 51 LYS n 1 52 ILE n 1 53 GLY n 1 54 PHE n 1 55 GLY n 1 56 LYS n 1 57 VAL n 1 58 GLU n 1 59 LYS n 1 60 TYR n 1 61 LEU n 1 62 VAL n 1 63 GLN n 1 64 SER n 1 65 PRO n 1 66 HIS n 1 67 ARG n 1 68 ASN n 1 69 GLN n 1 70 ASP n 1 71 LEU n 1 72 ASP n 1 73 LEU n 1 74 ALA n 1 75 TYR n 1 76 LEU n 1 77 ARG n 1 78 SER n 1 79 GLY n 1 80 ILE n 1 81 ALA n 1 82 ASP n 1 83 LEU n 1 84 GLY n 1 85 HIS n 1 86 LEU n 1 87 SER n 1 88 TYR n 1 89 PRO n 1 90 GLU n 1 91 GLN n 1 92 LEU n 1 93 LYS n 1 94 PHE n 1 95 LYS n 1 96 THR n 1 97 LYS n 1 98 GLN n 1 99 VAL n 1 100 LYS n 1 101 ASP n 1 102 SER n 1 103 LEU n 1 104 TYR n 1 105 LYS n 1 106 ILE n 1 107 ALA n 1 108 GLY n 1 109 ILE n 1 110 ALA n 1 111 ASP n 1 112 VAL n 1 113 GLU n 1 114 VAL n 1 115 ALA n 1 116 GLU n 1 117 THR n 1 118 LEU n 1 119 GLY n 1 120 MET n 1 121 GLU n 1 122 HIS n 1 123 PRO n 1 124 VAL n 1 125 LYS n 1 126 TYR n 1 127 ARG n 1 128 ASN n 1 129 LYS n 1 130 ALA n 1 131 GLN n 1 132 VAL n 1 133 PRO n 1 134 VAL n 1 135 ARG n 1 136 ARG n 1 137 VAL n 1 138 ASN n 1 139 GLY n 1 140 VAL n 1 141 LEU n 1 142 GLU n 1 143 THR n 1 144 GLY n 1 145 PHE n 1 146 PHE n 1 147 ARG n 1 148 LYS n 1 149 ASN n 1 150 SER n 1 151 HIS n 1 152 ASN n 1 153 LEU n 1 154 MET n 1 155 PRO n 1 156 LEU n 1 157 GLU n 1 158 ASP n 1 159 PHE n 1 160 PHE n 1 161 ILE n 1 162 GLN n 1 163 ASP n 1 164 PRO n 1 165 VAL n 1 166 ILE n 1 167 ASP n 1 168 GLN n 1 169 VAL n 1 170 VAL n 1 171 VAL n 1 172 ALA n 1 173 LEU n 1 174 ARG n 1 175 ASP n 1 176 LEU n 1 177 LEU n 1 178 ARG n 1 179 ARG n 1 180 PHE n 1 181 ASP n 1 182 LEU n 1 183 LYS n 1 184 PRO n 1 185 TYR n 1 186 ASP n 1 187 GLU n 1 188 LYS n 1 189 GLU n 1 190 GLN n 1 191 SER n 1 192 GLY n 1 193 LEU n 1 194 ILE n 1 195 ARG n 1 196 ASN n 1 197 LEU n 1 198 VAL n 1 199 VAL n 1 200 ARG n 1 201 ARG n 1 202 GLY n 1 203 HIS n 1 204 TYR n 1 205 SER n 1 206 GLY n 1 207 GLN n 1 208 ILE n 1 209 MET n 1 210 VAL n 1 211 VAL n 1 212 LEU n 1 213 VAL n 1 214 THR n 1 215 THR n 1 216 ARG n 1 217 PRO n 1 218 LYS n 1 219 VAL n 1 220 PHE n 1 221 ARG n 1 222 VAL n 1 223 ASP n 1 224 GLN n 1 225 LEU n 1 226 ILE n 1 227 GLU n 1 228 GLN n 1 229 VAL n 1 230 ILE n 1 231 LYS n 1 232 GLN n 1 233 PHE n 1 234 PRO n 1 235 GLU n 1 236 ILE n 1 237 VAL n 1 238 SER n 1 239 VAL n 1 240 MET n 1 241 GLN n 1 242 ASN n 1 243 ILE n 1 244 ASN n 1 245 ASP n 1 246 GLN n 1 247 ASN n 1 248 THR n 1 249 ASN n 1 250 ALA n 1 251 ILE n 1 252 PHE n 1 253 GLY n 1 254 LYS n 1 255 GLU n 1 256 TRP n 1 257 ARG n 1 258 THR n 1 259 LEU n 1 260 TYR n 1 261 GLY n 1 262 GLN n 1 263 ASP n 1 264 TYR n 1 265 ILE n 1 266 THR n 1 267 ASP n 1 268 GLN n 1 269 MET n 1 270 LEU n 1 271 GLY n 1 272 ASN n 1 273 ASP n 1 274 PHE n 1 275 GLN n 1 276 ILE n 1 277 ALA n 1 278 GLY n 1 279 PRO n 1 280 ALA n 1 281 PHE n 1 282 TYR n 1 283 GLN n 1 284 VAL n 1 285 ASN n 1 286 THR n 1 287 GLU n 1 288 MET n 1 289 ALA n 1 290 GLU n 1 291 LYS n 1 292 LEU n 1 293 TYR n 1 294 GLN n 1 295 THR n 1 296 ALA n 1 297 ILE n 1 298 ASP n 1 299 PHE n 1 300 ALA n 1 301 GLU n 1 302 LEU n 1 303 LYS n 1 304 LYS n 1 305 ASP n 1 306 ASP n 1 307 VAL n 1 308 ILE n 1 309 ILE n 1 310 ASP n 1 311 ALA n 1 312 TYR n 1 313 SER n 1 314 GLY n 1 315 ILE n 1 316 GLY n 1 317 THR n 1 318 ILE n 1 319 GLY n 1 320 LEU n 1 321 SER n 1 322 VAL n 1 323 ALA n 1 324 LYS n 1 325 HIS n 1 326 VAL n 1 327 LYS n 1 328 GLU n 1 329 VAL n 1 330 TYR n 1 331 GLY n 1 332 VAL n 1 333 GLU n 1 334 LEU n 1 335 ILE n 1 336 PRO n 1 337 GLU n 1 338 ALA n 1 339 VAL n 1 340 GLU n 1 341 ASN n 1 342 SER n 1 343 GLN n 1 344 LYS n 1 345 ASN n 1 346 ALA n 1 347 SER n 1 348 LEU n 1 349 ASN n 1 350 LYS n 1 351 ILE n 1 352 THR n 1 353 ASN n 1 354 ALA n 1 355 HIS n 1 356 TYR n 1 357 VAL n 1 358 CYS n 1 359 ASP n 1 360 THR n 1 361 ALA n 1 362 GLU n 1 363 ASN n 1 364 ALA n 1 365 MET n 1 366 LYS n 1 367 LYS n 1 368 TRP n 1 369 LEU n 1 370 LYS n 1 371 GLU n 1 372 GLY n 1 373 ILE n 1 374 GLN n 1 375 PRO n 1 376 THR n 1 377 VAL n 1 378 ILE n 1 379 LEU n 1 380 VAL n 1 381 ASP n 1 382 PRO n 1 383 PRO n 1 384 ARG n 1 385 LYS n 1 386 GLY n 1 387 LEU n 1 388 THR n 1 389 GLU n 1 390 SER n 1 391 PHE n 1 392 ILE n 1 393 LYS n 1 394 ALA n 1 395 SER n 1 396 ALA n 1 397 GLN n 1 398 THR n 1 399 GLY n 1 400 ALA n 1 401 ASP n 1 402 ARG n 1 403 ILE n 1 404 ALA n 1 405 TYR n 1 406 ILE n 1 407 SER n 1 408 CYS n 1 409 ASN n 1 410 VAL n 1 411 ALA n 1 412 THR n 1 413 MET n 1 414 ALA n 1 415 ARG n 1 416 ASP n 1 417 ILE n 1 418 LYS n 1 419 LEU n 1 420 TYR n 1 421 GLN n 1 422 GLU n 1 423 LEU n 1 424 GLY n 1 425 TYR n 1 426 GLU n 1 427 LEU n 1 428 LYS n 1 429 LYS n 1 430 VAL n 1 431 GLN n 1 432 PRO n 1 433 VAL n 1 434 ASP n 1 435 LEU n 1 436 PHE n 1 437 PRO n 1 438 GLN n 1 439 THR n 1 440 HIS n 1 441 HIS n 1 442 VAL n 1 443 GLN n 1 444 THR n 1 445 VAL n 1 446 ALA n 1 447 LEU n 1 448 LEU n 1 449 SER n 1 450 LYS n 1 451 LEU n 1 452 ASP n 2 1 A n 2 2 A n 2 3 A n 2 4 MUM n 2 5 U n 2 6 C n 2 7 C n 2 8 U n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 452 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SP_1029 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC BAA-334 / TIGR4' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 170187 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ; _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 866768 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'Streptococcus pneumoniae TIGR4' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 170187 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP Y1029_STRPN Q97R12 ? 1 ;MLKKNDIVEVEIVDLTHEGAGVAKVDGLVFFVENALPSEKILMRVLKVNKKIGFGKVEKYLVQSPHRNQDLDLAYLRSGI ADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFF IQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRGHYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVM QNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGL SVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKKWLKEGIQPTVILVDPPRKGLTESFIKASAQTGA DRIAYISCNVATMARDIKLYQELGYELKKVQPVDLFPQTHHVETVALLSKLD ; 1 2 PDB 5ZQ1 5ZQ1 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5ZQ1 A 1 ? 452 ? Q97R12 1 ? 452 ? 1 452 2 2 5ZQ1 B 1 ? 8 ? 5ZQ1 1936 ? 1943 ? 1936 1943 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5ZQ1 _struct_ref_seq_dif.mon_id GLN _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 443 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q97R12 _struct_ref_seq_dif.db_mon_id GLU _struct_ref_seq_dif.pdbx_seq_db_seq_num 443 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 443 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MUM 'RNA linking' . "5'-O-(dihydroxyphosphanyl)-5-methyl-5,6-dihydrouridine" ? 'C10 H17 N2 O8 P' 324.224 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAH 'L-peptide linking' n S-ADENOSYL-L-HOMOCYSTEINE ? 'C14 H20 N6 O5 S' 384.411 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5ZQ1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.15 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M MES, pH 5.5, 0.15 M ammonium sulfate, 25% PEG4000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-12-25 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5ZQ1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.100 _reflns.d_resolution_low 40.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10101 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.900 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.400 _reflns.pdbx_Rmerge_I_obs 0.163 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.300 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.912 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.173 _reflns.pdbx_Rpim_I_all 0.059 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 84586 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 3.100 3.150 ? ? ? ? ? ? 508 100.000 ? ? ? ? 0.844 ? ? ? ? ? ? ? ? 8.600 ? 0.909 ? ? 0.899 0.302 ? 1 1 0.801 ? 3.150 3.210 ? ? ? ? ? ? 477 100.000 ? ? ? ? 0.725 ? ? ? ? ? ? ? ? 8.700 ? 0.968 ? ? 0.771 0.258 ? 2 1 0.858 ? 3.210 3.270 ? ? ? ? ? ? 493 100.000 ? ? ? ? 0.661 ? ? ? ? ? ? ? ? 8.500 ? 1.012 ? ? 0.704 0.238 ? 3 1 0.863 ? 3.270 3.340 ? ? ? ? ? ? 495 100.000 ? ? ? ? 0.535 ? ? ? ? ? ? ? ? 8.400 ? 0.943 ? ? 0.571 0.194 ? 4 1 0.896 ? 3.340 3.410 ? ? ? ? ? ? 496 100.000 ? ? ? ? 0.460 ? ? ? ? ? ? ? ? 8.400 ? 0.942 ? ? 0.491 0.168 ? 5 1 0.925 ? 3.410 3.490 ? ? ? ? ? ? 494 99.600 ? ? ? ? 0.364 ? ? ? ? ? ? ? ? 8.300 ? 0.999 ? ? 0.389 0.133 ? 6 1 0.931 ? 3.490 3.580 ? ? ? ? ? ? 487 100.000 ? ? ? ? 0.318 ? ? ? ? ? ? ? ? 7.500 ? 0.962 ? ? 0.342 0.122 ? 7 1 0.954 ? 3.580 3.680 ? ? ? ? ? ? 496 100.000 ? ? ? ? 0.270 ? ? ? ? ? ? ? ? 7.000 ? 0.940 ? ? 0.291 0.106 ? 8 1 0.950 ? 3.680 3.780 ? ? ? ? ? ? 488 100.000 ? ? ? ? 0.256 ? ? ? ? ? ? ? ? 8.500 ? 1.039 ? ? 0.273 0.093 ? 9 1 0.964 ? 3.780 3.910 ? ? ? ? ? ? 509 100.000 ? ? ? ? 0.228 ? ? ? ? ? ? ? ? 8.900 ? 0.932 ? ? 0.243 0.081 ? 10 1 0.977 ? 3.910 4.040 ? ? ? ? ? ? 497 100.000 ? ? ? ? 0.185 ? ? ? ? ? ? ? ? 9.200 ? 0.956 ? ? 0.196 0.064 ? 11 1 0.982 ? 4.040 4.210 ? ? ? ? ? ? 496 100.000 ? ? ? ? 0.155 ? ? ? ? ? ? ? ? 9.200 ? 0.866 ? ? 0.164 0.053 ? 12 1 0.988 ? 4.210 4.400 ? ? ? ? ? ? 507 100.000 ? ? ? ? 0.117 ? ? ? ? ? ? ? ? 9.000 ? 0.856 ? ? 0.124 0.041 ? 13 1 0.992 ? 4.400 4.630 ? ? ? ? ? ? 506 99.800 ? ? ? ? 0.105 ? ? ? ? ? ? ? ? 8.900 ? 0.838 ? ? 0.112 0.037 ? 14 1 0.993 ? 4.630 4.920 ? ? ? ? ? ? 510 100.000 ? ? ? ? 0.090 ? ? ? ? ? ? ? ? 8.800 ? 0.775 ? ? 0.095 0.032 ? 15 1 0.996 ? 4.920 5.300 ? ? ? ? ? ? 507 100.000 ? ? ? ? 0.094 ? ? ? ? ? ? ? ? 8.500 ? 0.747 ? ? 0.100 0.034 ? 16 1 0.994 ? 5.300 5.830 ? ? ? ? ? ? 511 99.800 ? ? ? ? 0.098 ? ? ? ? ? ? ? ? 8.400 ? 0.701 ? ? 0.105 0.035 ? 17 1 0.994 ? 5.830 6.670 ? ? ? ? ? ? 520 99.400 ? ? ? ? 0.093 ? ? ? ? ? ? ? ? 7.800 ? 0.695 ? ? 0.100 0.035 ? 18 1 0.992 ? 6.670 8.390 ? ? ? ? ? ? 529 99.600 ? ? ? ? 0.073 ? ? ? ? ? ? ? ? 7.500 ? 0.743 ? ? 0.078 0.028 ? 19 1 0.990 ? 8.390 40.000 ? ? ? ? ? ? 575 99.000 ? ? ? ? 0.086 ? ? ? ? ? ? ? ? 7.400 ? 1.441 ? ? 0.092 0.033 ? 20 1 0.986 ? # _refine.aniso_B[1][1] 0.0300 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 0.0500 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] -0.0800 _refine.B_iso_max 141.550 _refine.B_iso_mean 64.7950 _refine.B_iso_min 41.910 _refine.correlation_coeff_Fo_to_Fc 0.9350 _refine.correlation_coeff_Fo_to_Fc_free 0.9220 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5ZQ1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.1000 _refine.ls_d_res_low 40.000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9422 _refine.ls_number_reflns_R_free 511 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.6000 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1972 _refine.ls_R_factor_R_free 0.2373 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1951 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5XJ1 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.4750 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 18.6920 _refine.overall_SU_ML 0.3200 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 3.1000 _refine_hist.d_res_low 40.000 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3789 _refine_hist.pdbx_number_residues_total 460 _refine_hist.pdbx_B_iso_mean_ligand 59.53 _refine_hist.pdbx_number_atoms_protein 3600 _refine_hist.pdbx_number_atoms_nucleic_acid 163 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 0.019 3874 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 3621 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.256 1.951 5267 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.909 3.000 8417 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.198 5.000 451 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 36.778 25.059 170 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 15.141 15.000 680 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 15.447 15.000 19 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.070 0.200 606 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 0.020 4128 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 732 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 3.1000 _refine_ls_shell.d_res_low 3.1810 _refine_ls_shell.number_reflns_all 709 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 32 _refine_ls_shell.number_reflns_R_work 677 _refine_ls_shell.percent_reflns_obs 97.6600 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2760 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2890 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5ZQ1 _struct.title 'Crystal structure of spRlmCD with U1939loop RNA at 3.10 angstrom' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5ZQ1 _struct_keywords.text 'methyltransferase, Ribosome, 23S RNA, Streptococcus pneumoniae, TRANSFERASE, TRANSFERASE-RNA complex' _struct_keywords.pdbx_keywords TRANSFERASE/RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 70 ? SER A 78 ? ASP A 70 SER A 78 1 ? 9 HELX_P HELX_P2 AA2 SER A 87 ? ILE A 106 ? SER A 87 ILE A 106 1 ? 20 HELX_P HELX_P3 AA3 ASP A 163 ? PHE A 180 ? ASP A 163 PHE A 180 1 ? 18 HELX_P HELX_P4 AA4 ARG A 221 ? PHE A 233 ? ARG A 221 PHE A 233 1 ? 13 HELX_P HELX_P5 AA5 ASN A 285 ? GLU A 301 ? ASN A 285 GLU A 301 1 ? 17 HELX_P HELX_P6 AA6 GLY A 316 ? ALA A 323 ? GLY A 316 ALA A 323 1 ? 8 HELX_P HELX_P7 AA7 LYS A 324 ? VAL A 326 ? LYS A 324 VAL A 326 5 ? 3 HELX_P HELX_P8 AA8 ILE A 335 ? ASN A 349 ? ILE A 335 ASN A 349 1 ? 15 HELX_P HELX_P9 AA9 THR A 360 ? GLY A 372 ? THR A 360 GLY A 372 1 ? 13 HELX_P HELX_P10 AB1 THR A 388 ? THR A 398 ? THR A 388 THR A 398 1 ? 11 HELX_P HELX_P11 AB2 ASN A 409 ? GLU A 422 ? ASN A 409 GLU A 422 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A CYS 408 SG ? ? ? 1_555 B MUM 4 C6 ? ? A CYS 408 B MUM 1939 1_555 ? ? ? ? ? ? ? 1.637 ? ? covale2 covale one ? B A 3 "O3'" ? ? ? 1_555 B MUM 4 P ? ? B A 1938 B MUM 1939 1_555 ? ? ? ? ? ? ? 1.487 ? ? covale3 covale one ? B MUM 4 "O3'" ? ? ? 1_555 B U 5 P ? ? B MUM 1939 B U 1940 1_555 ? ? ? ? ? ? ? 1.507 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 8 ? AA3 ? 7 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? parallel AA2 5 6 ? parallel AA2 6 7 ? parallel AA2 7 8 ? parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? parallel AA3 6 7 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 7 ? GLU A 11 ? ILE A 7 GLU A 11 AA1 2 LYS A 40 ? VAL A 48 ? LYS A 40 VAL A 48 AA1 3 ILE A 52 ? VAL A 62 ? ILE A 52 VAL A 62 AA1 4 LEU A 28 ? VAL A 32 ? LEU A 28 VAL A 32 AA1 5 GLY A 21 ? VAL A 25 ? GLY A 21 VAL A 25 AA1 6 ASP A 14 ? LEU A 15 ? ASP A 14 LEU A 15 AA2 1 GLU A 113 ? VAL A 114 ? GLU A 113 VAL A 114 AA2 2 TYR A 425 ? VAL A 433 ? TYR A 425 VAL A 433 AA2 3 GLN A 443 ? LYS A 450 ? GLN A 443 LYS A 450 AA2 4 ARG A 402 ? SER A 407 ? ARG A 402 SER A 407 AA2 5 VAL A 377 ? VAL A 380 ? VAL A 377 VAL A 380 AA2 6 VAL A 307 ? ALA A 311 ? VAL A 307 ALA A 311 AA2 7 GLU A 328 ? GLU A 333 ? GLU A 328 GLU A 333 AA2 8 ALA A 354 ? CYS A 358 ? ALA A 354 CYS A 358 AA3 1 LEU A 153 ? PRO A 155 ? LEU A 153 PRO A 155 AA3 2 LEU A 141 ? PHE A 146 ? LEU A 141 PHE A 146 AA3 3 LYS A 129 ? ARG A 136 ? LYS A 129 ARG A 136 AA3 4 ILE A 194 ? ARG A 201 ? ILE A 194 ARG A 201 AA3 5 ILE A 208 ? THR A 214 ? ILE A 208 THR A 214 AA3 6 ILE A 236 ? ILE A 243 ? ILE A 236 ILE A 243 AA3 7 TRP A 256 ? GLY A 261 ? TRP A 256 GLY A 261 AA4 1 ILE A 265 ? MET A 269 ? ILE A 265 MET A 269 AA4 2 ASN A 272 ? ILE A 276 ? ASN A 272 ILE A 276 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 8 ? N VAL A 8 O MET A 43 ? O MET A 43 AA1 2 3 N LEU A 42 ? N LEU A 42 O GLU A 58 ? O GLU A 58 AA1 3 4 O GLY A 53 ? O GLY A 53 N VAL A 29 ? N VAL A 29 AA1 4 5 O PHE A 30 ? O PHE A 30 N ALA A 23 ? N ALA A 23 AA1 5 6 O VAL A 22 ? O VAL A 22 N ASP A 14 ? N ASP A 14 AA2 1 2 N GLU A 113 ? N GLU A 113 O LYS A 428 ? O LYS A 428 AA2 2 3 N GLU A 426 ? N GLU A 426 O SER A 449 ? O SER A 449 AA2 3 4 O LEU A 448 ? O LEU A 448 N ILE A 403 ? N ILE A 403 AA2 4 5 O ILE A 406 ? O ILE A 406 N VAL A 380 ? N VAL A 380 AA2 5 6 O LEU A 379 ? O LEU A 379 N ILE A 309 ? N ILE A 309 AA2 6 7 N ASP A 310 ? N ASP A 310 O TYR A 330 ? O TYR A 330 AA2 7 8 N VAL A 329 ? N VAL A 329 O HIS A 355 ? O HIS A 355 AA3 1 2 O MET A 154 ? O MET A 154 N PHE A 145 ? N PHE A 145 AA3 2 3 O GLU A 142 ? O GLU A 142 N ARG A 135 ? N ARG A 135 AA3 3 4 N VAL A 132 ? N VAL A 132 O LEU A 197 ? O LEU A 197 AA3 4 5 N VAL A 198 ? N VAL A 198 O VAL A 211 ? O VAL A 211 AA3 5 6 N THR A 214 ? N THR A 214 O ASN A 242 ? O ASN A 242 AA3 6 7 N GLN A 241 ? N GLN A 241 O ARG A 257 ? O ARG A 257 AA4 1 2 N ILE A 265 ? N ILE A 265 O ILE A 276 ? O ILE A 276 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SAH _struct_site.pdbx_auth_seq_id 501 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 18 _struct_site.details 'binding site for residue SAH A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 PHE A 281 ? PHE A 281 . ? 1_555 ? 2 AC1 18 GLN A 283 ? GLN A 283 . ? 1_555 ? 3 AC1 18 TYR A 293 ? TYR A 293 . ? 1_555 ? 4 AC1 18 TYR A 312 ? TYR A 312 . ? 1_555 ? 5 AC1 18 SER A 313 ? SER A 313 . ? 1_555 ? 6 AC1 18 GLY A 314 ? GLY A 314 . ? 1_555 ? 7 AC1 18 THR A 317 ? THR A 317 . ? 1_555 ? 8 AC1 18 ILE A 318 ? ILE A 318 . ? 1_555 ? 9 AC1 18 GLU A 333 ? GLU A 333 . ? 1_555 ? 10 AC1 18 LEU A 334 ? LEU A 334 . ? 1_555 ? 11 AC1 18 ILE A 335 ? ILE A 335 . ? 1_555 ? 12 AC1 18 THR A 360 ? THR A 360 . ? 1_555 ? 13 AC1 18 ALA A 361 ? ALA A 361 . ? 1_555 ? 14 AC1 18 GLU A 362 ? GLU A 362 . ? 1_555 ? 15 AC1 18 ASP A 381 ? ASP A 381 . ? 1_555 ? 16 AC1 18 PRO A 383 ? PRO A 383 . ? 1_555 ? 17 AC1 18 LYS A 385 ? LYS A 385 . ? 1_555 ? 18 AC1 18 MUM B 4 ? MUM B 1939 . ? 1_555 ? # _atom_sites.entry_id 5ZQ1 _atom_sites.fract_transf_matrix[1][1] 0.021103 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010406 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008759 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 HIS 17 17 17 HIS HIS A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 MET 43 43 43 MET MET A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 HIS 66 66 66 HIS HIS A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 TYR 75 75 75 TYR TYR A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 HIS 85 85 85 HIS HIS A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 PHE 94 94 94 PHE PHE A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 GLN 98 98 98 GLN GLN A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 MET 120 120 120 MET MET A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 HIS 122 122 122 HIS HIS A . n A 1 123 PRO 123 123 123 PRO PRO A . n A 1 124 VAL 124 124 124 VAL VAL A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 TYR 126 126 126 TYR TYR A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 ASN 128 128 128 ASN ASN A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 GLN 131 131 131 GLN GLN A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 PRO 133 133 133 PRO PRO A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 ARG 135 135 135 ARG ARG A . n A 1 136 ARG 136 136 136 ARG ARG A . n A 1 137 VAL 137 137 137 VAL VAL A . n A 1 138 ASN 138 138 138 ASN ASN A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 THR 143 143 143 THR THR A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 PHE 145 145 145 PHE PHE A . n A 1 146 PHE 146 146 146 PHE PHE A . n A 1 147 ARG 147 147 147 ARG ARG A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 ASN 149 149 149 ASN ASN A . n A 1 150 SER 150 150 150 SER SER A . n A 1 151 HIS 151 151 151 HIS HIS A . n A 1 152 ASN 152 152 152 ASN ASN A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 MET 154 154 154 MET MET A . n A 1 155 PRO 155 155 155 PRO PRO A . n A 1 156 LEU 156 156 156 LEU LEU A . n A 1 157 GLU 157 157 157 GLU GLU A . n A 1 158 ASP 158 158 158 ASP ASP A . n A 1 159 PHE 159 159 159 PHE PHE A . n A 1 160 PHE 160 160 160 PHE PHE A . n A 1 161 ILE 161 161 161 ILE ILE A . n A 1 162 GLN 162 162 162 GLN GLN A . n A 1 163 ASP 163 163 163 ASP ASP A . n A 1 164 PRO 164 164 164 PRO PRO A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 GLN 168 168 168 GLN GLN A . n A 1 169 VAL 169 169 169 VAL VAL A . n A 1 170 VAL 170 170 170 VAL VAL A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 ARG 174 174 174 ARG ARG A . n A 1 175 ASP 175 175 175 ASP ASP A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 LEU 177 177 177 LEU LEU A . n A 1 178 ARG 178 178 178 ARG ARG A . n A 1 179 ARG 179 179 179 ARG ARG A . n A 1 180 PHE 180 180 180 PHE PHE A . n A 1 181 ASP 181 181 181 ASP ASP A . n A 1 182 LEU 182 182 182 LEU LEU A . n A 1 183 LYS 183 183 183 LYS LYS A . n A 1 184 PRO 184 184 184 PRO PRO A . n A 1 185 TYR 185 185 185 TYR TYR A . n A 1 186 ASP 186 186 186 ASP ASP A . n A 1 187 GLU 187 187 187 GLU GLU A . n A 1 188 LYS 188 188 188 LYS LYS A . n A 1 189 GLU 189 189 189 GLU GLU A . n A 1 190 GLN 190 190 190 GLN GLN A . n A 1 191 SER 191 191 191 SER SER A . n A 1 192 GLY 192 192 192 GLY GLY A . n A 1 193 LEU 193 193 193 LEU LEU A . n A 1 194 ILE 194 194 194 ILE ILE A . n A 1 195 ARG 195 195 195 ARG ARG A . n A 1 196 ASN 196 196 196 ASN ASN A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 VAL 198 198 198 VAL VAL A . n A 1 199 VAL 199 199 199 VAL VAL A . n A 1 200 ARG 200 200 200 ARG ARG A . n A 1 201 ARG 201 201 201 ARG ARG A . n A 1 202 GLY 202 202 202 GLY GLY A . n A 1 203 HIS 203 203 203 HIS HIS A . n A 1 204 TYR 204 204 204 TYR TYR A . n A 1 205 SER 205 205 205 SER SER A . n A 1 206 GLY 206 206 206 GLY GLY A . n A 1 207 GLN 207 207 207 GLN GLN A . n A 1 208 ILE 208 208 208 ILE ILE A . n A 1 209 MET 209 209 209 MET MET A . n A 1 210 VAL 210 210 210 VAL VAL A . n A 1 211 VAL 211 211 211 VAL VAL A . n A 1 212 LEU 212 212 212 LEU LEU A . n A 1 213 VAL 213 213 213 VAL VAL A . n A 1 214 THR 214 214 214 THR THR A . n A 1 215 THR 215 215 215 THR THR A . n A 1 216 ARG 216 216 216 ARG ARG A . n A 1 217 PRO 217 217 217 PRO PRO A . n A 1 218 LYS 218 218 218 LYS LYS A . n A 1 219 VAL 219 219 219 VAL VAL A . n A 1 220 PHE 220 220 220 PHE PHE A . n A 1 221 ARG 221 221 221 ARG ARG A . n A 1 222 VAL 222 222 222 VAL VAL A . n A 1 223 ASP 223 223 223 ASP ASP A . n A 1 224 GLN 224 224 224 GLN GLN A . n A 1 225 LEU 225 225 225 LEU LEU A . n A 1 226 ILE 226 226 226 ILE ILE A . n A 1 227 GLU 227 227 227 GLU GLU A . n A 1 228 GLN 228 228 228 GLN GLN A . n A 1 229 VAL 229 229 229 VAL VAL A . n A 1 230 ILE 230 230 230 ILE ILE A . n A 1 231 LYS 231 231 231 LYS LYS A . n A 1 232 GLN 232 232 232 GLN GLN A . n A 1 233 PHE 233 233 233 PHE PHE A . n A 1 234 PRO 234 234 234 PRO PRO A . n A 1 235 GLU 235 235 235 GLU GLU A . n A 1 236 ILE 236 236 236 ILE ILE A . n A 1 237 VAL 237 237 237 VAL VAL A . n A 1 238 SER 238 238 238 SER SER A . n A 1 239 VAL 239 239 239 VAL VAL A . n A 1 240 MET 240 240 240 MET MET A . n A 1 241 GLN 241 241 241 GLN GLN A . n A 1 242 ASN 242 242 242 ASN ASN A . n A 1 243 ILE 243 243 243 ILE ILE A . n A 1 244 ASN 244 244 244 ASN ASN A . n A 1 245 ASP 245 245 245 ASP ASP A . n A 1 246 GLN 246 246 246 GLN GLN A . n A 1 247 ASN 247 247 247 ASN ASN A . n A 1 248 THR 248 248 248 THR THR A . n A 1 249 ASN 249 249 249 ASN ASN A . n A 1 250 ALA 250 250 250 ALA ALA A . n A 1 251 ILE 251 251 251 ILE ILE A . n A 1 252 PHE 252 252 252 PHE PHE A . n A 1 253 GLY 253 253 253 GLY GLY A . n A 1 254 LYS 254 254 254 LYS LYS A . n A 1 255 GLU 255 255 255 GLU GLU A . n A 1 256 TRP 256 256 256 TRP TRP A . n A 1 257 ARG 257 257 257 ARG ARG A . n A 1 258 THR 258 258 258 THR THR A . n A 1 259 LEU 259 259 259 LEU LEU A . n A 1 260 TYR 260 260 260 TYR TYR A . n A 1 261 GLY 261 261 261 GLY GLY A . n A 1 262 GLN 262 262 262 GLN GLN A . n A 1 263 ASP 263 263 263 ASP ASP A . n A 1 264 TYR 264 264 264 TYR TYR A . n A 1 265 ILE 265 265 265 ILE ILE A . n A 1 266 THR 266 266 266 THR THR A . n A 1 267 ASP 267 267 267 ASP ASP A . n A 1 268 GLN 268 268 268 GLN GLN A . n A 1 269 MET 269 269 269 MET MET A . n A 1 270 LEU 270 270 270 LEU LEU A . n A 1 271 GLY 271 271 271 GLY GLY A . n A 1 272 ASN 272 272 272 ASN ASN A . n A 1 273 ASP 273 273 273 ASP ASP A . n A 1 274 PHE 274 274 274 PHE PHE A . n A 1 275 GLN 275 275 275 GLN GLN A . n A 1 276 ILE 276 276 276 ILE ILE A . n A 1 277 ALA 277 277 277 ALA ALA A . n A 1 278 GLY 278 278 278 GLY GLY A . n A 1 279 PRO 279 279 279 PRO PRO A . n A 1 280 ALA 280 280 280 ALA ALA A . n A 1 281 PHE 281 281 281 PHE PHE A . n A 1 282 TYR 282 282 282 TYR TYR A . n A 1 283 GLN 283 283 283 GLN GLN A . n A 1 284 VAL 284 284 284 VAL VAL A . n A 1 285 ASN 285 285 285 ASN ASN A . n A 1 286 THR 286 286 286 THR THR A . n A 1 287 GLU 287 287 287 GLU GLU A . n A 1 288 MET 288 288 288 MET MET A . n A 1 289 ALA 289 289 289 ALA ALA A . n A 1 290 GLU 290 290 290 GLU GLU A . n A 1 291 LYS 291 291 291 LYS LYS A . n A 1 292 LEU 292 292 292 LEU LEU A . n A 1 293 TYR 293 293 293 TYR TYR A . n A 1 294 GLN 294 294 294 GLN GLN A . n A 1 295 THR 295 295 295 THR THR A . n A 1 296 ALA 296 296 296 ALA ALA A . n A 1 297 ILE 297 297 297 ILE ILE A . n A 1 298 ASP 298 298 298 ASP ASP A . n A 1 299 PHE 299 299 299 PHE PHE A . n A 1 300 ALA 300 300 300 ALA ALA A . n A 1 301 GLU 301 301 301 GLU GLU A . n A 1 302 LEU 302 302 302 LEU LEU A . n A 1 303 LYS 303 303 303 LYS LYS A . n A 1 304 LYS 304 304 304 LYS LYS A . n A 1 305 ASP 305 305 305 ASP ASP A . n A 1 306 ASP 306 306 306 ASP ASP A . n A 1 307 VAL 307 307 307 VAL VAL A . n A 1 308 ILE 308 308 308 ILE ILE A . n A 1 309 ILE 309 309 309 ILE ILE A . n A 1 310 ASP 310 310 310 ASP ASP A . n A 1 311 ALA 311 311 311 ALA ALA A . n A 1 312 TYR 312 312 312 TYR TYR A . n A 1 313 SER 313 313 313 SER SER A . n A 1 314 GLY 314 314 314 GLY GLY A . n A 1 315 ILE 315 315 315 ILE ILE A . n A 1 316 GLY 316 316 316 GLY GLY A . n A 1 317 THR 317 317 317 THR THR A . n A 1 318 ILE 318 318 318 ILE ILE A . n A 1 319 GLY 319 319 319 GLY GLY A . n A 1 320 LEU 320 320 320 LEU LEU A . n A 1 321 SER 321 321 321 SER SER A . n A 1 322 VAL 322 322 322 VAL VAL A . n A 1 323 ALA 323 323 323 ALA ALA A . n A 1 324 LYS 324 324 324 LYS LYS A . n A 1 325 HIS 325 325 325 HIS HIS A . n A 1 326 VAL 326 326 326 VAL VAL A . n A 1 327 LYS 327 327 327 LYS LYS A . n A 1 328 GLU 328 328 328 GLU GLU A . n A 1 329 VAL 329 329 329 VAL VAL A . n A 1 330 TYR 330 330 330 TYR TYR A . n A 1 331 GLY 331 331 331 GLY GLY A . n A 1 332 VAL 332 332 332 VAL VAL A . n A 1 333 GLU 333 333 333 GLU GLU A . n A 1 334 LEU 334 334 334 LEU LEU A . n A 1 335 ILE 335 335 335 ILE ILE A . n A 1 336 PRO 336 336 336 PRO PRO A . n A 1 337 GLU 337 337 337 GLU GLU A . n A 1 338 ALA 338 338 338 ALA ALA A . n A 1 339 VAL 339 339 339 VAL VAL A . n A 1 340 GLU 340 340 340 GLU GLU A . n A 1 341 ASN 341 341 341 ASN ASN A . n A 1 342 SER 342 342 342 SER SER A . n A 1 343 GLN 343 343 343 GLN GLN A . n A 1 344 LYS 344 344 344 LYS LYS A . n A 1 345 ASN 345 345 345 ASN ASN A . n A 1 346 ALA 346 346 346 ALA ALA A . n A 1 347 SER 347 347 347 SER SER A . n A 1 348 LEU 348 348 348 LEU LEU A . n A 1 349 ASN 349 349 349 ASN ASN A . n A 1 350 LYS 350 350 350 LYS LYS A . n A 1 351 ILE 351 351 351 ILE ILE A . n A 1 352 THR 352 352 352 THR THR A . n A 1 353 ASN 353 353 353 ASN ASN A . n A 1 354 ALA 354 354 354 ALA ALA A . n A 1 355 HIS 355 355 355 HIS HIS A . n A 1 356 TYR 356 356 356 TYR TYR A . n A 1 357 VAL 357 357 357 VAL VAL A . n A 1 358 CYS 358 358 358 CYS CYS A . n A 1 359 ASP 359 359 359 ASP ASP A . n A 1 360 THR 360 360 360 THR THR A . n A 1 361 ALA 361 361 361 ALA ALA A . n A 1 362 GLU 362 362 362 GLU GLU A . n A 1 363 ASN 363 363 363 ASN ASN A . n A 1 364 ALA 364 364 364 ALA ALA A . n A 1 365 MET 365 365 365 MET MET A . n A 1 366 LYS 366 366 366 LYS LYS A . n A 1 367 LYS 367 367 367 LYS LYS A . n A 1 368 TRP 368 368 368 TRP TRP A . n A 1 369 LEU 369 369 369 LEU LEU A . n A 1 370 LYS 370 370 370 LYS LYS A . n A 1 371 GLU 371 371 371 GLU GLU A . n A 1 372 GLY 372 372 372 GLY GLY A . n A 1 373 ILE 373 373 373 ILE ILE A . n A 1 374 GLN 374 374 374 GLN GLN A . n A 1 375 PRO 375 375 375 PRO PRO A . n A 1 376 THR 376 376 376 THR THR A . n A 1 377 VAL 377 377 377 VAL VAL A . n A 1 378 ILE 378 378 378 ILE ILE A . n A 1 379 LEU 379 379 379 LEU LEU A . n A 1 380 VAL 380 380 380 VAL VAL A . n A 1 381 ASP 381 381 381 ASP ASP A . n A 1 382 PRO 382 382 382 PRO PRO A . n A 1 383 PRO 383 383 383 PRO PRO A . n A 1 384 ARG 384 384 384 ARG ARG A . n A 1 385 LYS 385 385 385 LYS LYS A . n A 1 386 GLY 386 386 386 GLY GLY A . n A 1 387 LEU 387 387 387 LEU LEU A . n A 1 388 THR 388 388 388 THR THR A . n A 1 389 GLU 389 389 389 GLU GLU A . n A 1 390 SER 390 390 390 SER SER A . n A 1 391 PHE 391 391 391 PHE PHE A . n A 1 392 ILE 392 392 392 ILE ILE A . n A 1 393 LYS 393 393 393 LYS LYS A . n A 1 394 ALA 394 394 394 ALA ALA A . n A 1 395 SER 395 395 395 SER SER A . n A 1 396 ALA 396 396 396 ALA ALA A . n A 1 397 GLN 397 397 397 GLN GLN A . n A 1 398 THR 398 398 398 THR THR A . n A 1 399 GLY 399 399 399 GLY GLY A . n A 1 400 ALA 400 400 400 ALA ALA A . n A 1 401 ASP 401 401 401 ASP ASP A . n A 1 402 ARG 402 402 402 ARG ARG A . n A 1 403 ILE 403 403 403 ILE ILE A . n A 1 404 ALA 404 404 404 ALA ALA A . n A 1 405 TYR 405 405 405 TYR TYR A . n A 1 406 ILE 406 406 406 ILE ILE A . n A 1 407 SER 407 407 407 SER SER A . n A 1 408 CYS 408 408 408 CYS CYS A . n A 1 409 ASN 409 409 409 ASN ASN A . n A 1 410 VAL 410 410 410 VAL VAL A . n A 1 411 ALA 411 411 411 ALA ALA A . n A 1 412 THR 412 412 412 THR THR A . n A 1 413 MET 413 413 413 MET MET A . n A 1 414 ALA 414 414 414 ALA ALA A . n A 1 415 ARG 415 415 415 ARG ARG A . n A 1 416 ASP 416 416 416 ASP ASP A . n A 1 417 ILE 417 417 417 ILE ILE A . n A 1 418 LYS 418 418 418 LYS LYS A . n A 1 419 LEU 419 419 419 LEU LEU A . n A 1 420 TYR 420 420 420 TYR TYR A . n A 1 421 GLN 421 421 421 GLN GLN A . n A 1 422 GLU 422 422 422 GLU GLU A . n A 1 423 LEU 423 423 423 LEU LEU A . n A 1 424 GLY 424 424 424 GLY GLY A . n A 1 425 TYR 425 425 425 TYR TYR A . n A 1 426 GLU 426 426 426 GLU GLU A . n A 1 427 LEU 427 427 427 LEU LEU A . n A 1 428 LYS 428 428 428 LYS LYS A . n A 1 429 LYS 429 429 429 LYS LYS A . n A 1 430 VAL 430 430 430 VAL VAL A . n A 1 431 GLN 431 431 431 GLN GLN A . n A 1 432 PRO 432 432 432 PRO PRO A . n A 1 433 VAL 433 433 433 VAL VAL A . n A 1 434 ASP 434 434 434 ASP ASP A . n A 1 435 LEU 435 435 435 LEU LEU A . n A 1 436 PHE 436 436 436 PHE PHE A . n A 1 437 PRO 437 437 437 PRO PRO A . n A 1 438 GLN 438 438 438 GLN GLN A . n A 1 439 THR 439 439 439 THR THR A . n A 1 440 HIS 440 440 440 HIS HIS A . n A 1 441 HIS 441 441 441 HIS HIS A . n A 1 442 VAL 442 442 442 VAL VAL A . n A 1 443 GLN 443 443 443 GLN GLN A . n A 1 444 THR 444 444 444 THR THR A . n A 1 445 VAL 445 445 445 VAL VAL A . n A 1 446 ALA 446 446 446 ALA ALA A . n A 1 447 LEU 447 447 447 LEU LEU A . n A 1 448 LEU 448 448 448 LEU LEU A . n A 1 449 SER 449 449 449 SER SER A . n A 1 450 LYS 450 450 450 LYS LYS A . n A 1 451 LEU 451 451 451 LEU LEU A . n A 1 452 ASP 452 452 452 ASP ASP A . n B 2 1 A 1 1936 1936 A A B . n B 2 2 A 2 1937 1937 A A B . n B 2 3 A 3 1938 1938 A A B . n B 2 4 MUM 4 1939 1939 MUM MUM B . n B 2 5 U 5 1940 1940 U U B . n B 2 6 C 6 1941 1941 C C B . n B 2 7 C 7 1942 1942 C C B . n B 2 8 U 8 1943 1943 U U B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id SAH _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id SAH _pdbx_nonpoly_scheme.auth_mon_id SAH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2200 ? 1 MORE -14 ? 1 'SSA (A^2)' 20040 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-10-24 2 'Structure model' 1 1 2018-11-14 3 'Structure model' 1 2 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Structure summary' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' struct 4 3 'Structure model' chem_comp_atom 5 3 'Structure model' chem_comp_bond 6 3 'Structure model' database_2 7 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_volume' 3 2 'Structure model' '_citation.page_first' 4 2 'Structure model' '_citation.page_last' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_struct.title' 8 3 'Structure model' '_database_2.pdbx_DOI' 9 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0189 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O2'" B A 1937 ? ? "O5'" B A 1938 ? ? 1.43 2 1 O A ARG 147 ? ? OG A SER 150 ? ? 2.15 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" B A 1938 ? ? P B MUM 1939 ? ? 1.487 1.607 -0.120 0.012 Y 2 1 "O3'" B MUM 1939 ? ? P B U 1940 ? ? 1.507 1.607 -0.100 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 77 ? ? CZ A ARG 77 ? ? NH2 A ARG 77 ? ? 123.63 120.30 3.33 0.50 N 2 1 "O3'" B A 1938 ? ? P B MUM 1939 ? ? "O5'" B MUM 1939 ? ? 120.59 104.00 16.59 1.90 Y 3 1 "C3'" B MUM 1939 ? ? "O3'" B MUM 1939 ? ? P B U 1940 ? ? 138.53 119.70 18.83 1.20 Y 4 1 "O3'" B MUM 1939 ? ? P B U 1940 ? ? OP2 B U 1940 ? ? 126.51 110.50 16.01 1.10 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 26 ? ? 24.51 55.58 2 1 SER A 38 ? ? 75.34 -2.87 3 1 ASP A 70 ? ? -39.03 112.06 4 1 SER A 78 ? ? -74.23 49.43 5 1 PHE A 160 ? ? 71.41 -55.06 6 1 LEU A 270 ? ? 53.82 -131.04 7 1 GLN A 374 ? ? -114.92 76.14 8 1 PRO A 383 ? ? -67.45 -174.29 9 1 LYS A 428 ? ? -94.51 -67.69 10 1 PHE A 436 ? ? -118.98 71.36 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id B _pdbx_unobs_or_zero_occ_atoms.auth_comp_id A _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 1936 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id "O5'" _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id B _pdbx_unobs_or_zero_occ_atoms.label_comp_id A _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id "O5'" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 GLN N N N N 160 GLN CA C N S 161 GLN C C N N 162 GLN O O N N 163 GLN CB C N N 164 GLN CG C N N 165 GLN CD C N N 166 GLN OE1 O N N 167 GLN NE2 N N N 168 GLN OXT O N N 169 GLN H H N N 170 GLN H2 H N N 171 GLN HA H N N 172 GLN HB2 H N N 173 GLN HB3 H N N 174 GLN HG2 H N N 175 GLN HG3 H N N 176 GLN HE21 H N N 177 GLN HE22 H N N 178 GLN HXT H N N 179 GLU N N N N 180 GLU CA C N S 181 GLU C C N N 182 GLU O O N N 183 GLU CB C N N 184 GLU CG C N N 185 GLU CD C N N 186 GLU OE1 O N N 187 GLU OE2 O N N 188 GLU OXT O N N 189 GLU H H N N 190 GLU H2 H N N 191 GLU HA H N N 192 GLU HB2 H N N 193 GLU HB3 H N N 194 GLU HG2 H N N 195 GLU HG3 H N N 196 GLU HE2 H N N 197 GLU HXT H N N 198 GLY N N N N 199 GLY CA C N N 200 GLY C C N N 201 GLY O O N N 202 GLY OXT O N N 203 GLY H H N N 204 GLY H2 H N N 205 GLY HA2 H N N 206 GLY HA3 H N N 207 GLY HXT H N N 208 HIS N N N N 209 HIS CA C N S 210 HIS C C N N 211 HIS O O N N 212 HIS CB C N N 213 HIS CG C Y N 214 HIS ND1 N Y N 215 HIS CD2 C Y N 216 HIS CE1 C Y N 217 HIS NE2 N Y N 218 HIS OXT O N N 219 HIS H H N N 220 HIS H2 H N N 221 HIS HA H N N 222 HIS HB2 H N N 223 HIS HB3 H N N 224 HIS HD1 H N N 225 HIS HD2 H N N 226 HIS HE1 H N N 227 HIS HE2 H N N 228 HIS HXT H N N 229 ILE N N N N 230 ILE CA C N S 231 ILE C C N N 232 ILE O O N N 233 ILE CB C N S 234 ILE CG1 C N N 235 ILE CG2 C N N 236 ILE CD1 C N N 237 ILE OXT O N N 238 ILE H H N N 239 ILE H2 H N N 240 ILE HA H N N 241 ILE HB H N N 242 ILE HG12 H N N 243 ILE HG13 H N N 244 ILE HG21 H N N 245 ILE HG22 H N N 246 ILE HG23 H N N 247 ILE HD11 H N N 248 ILE HD12 H N N 249 ILE HD13 H N N 250 ILE HXT H N N 251 LEU N N N N 252 LEU CA C N S 253 LEU C C N N 254 LEU O O N N 255 LEU CB C N N 256 LEU CG C N N 257 LEU CD1 C N N 258 LEU CD2 C N N 259 LEU OXT O N N 260 LEU H H N N 261 LEU H2 H N N 262 LEU HA H N N 263 LEU HB2 H N N 264 LEU HB3 H N N 265 LEU HG H N N 266 LEU HD11 H N N 267 LEU HD12 H N N 268 LEU HD13 H N N 269 LEU HD21 H N N 270 LEU HD22 H N N 271 LEU HD23 H N N 272 LEU HXT H N N 273 LYS N N N N 274 LYS CA C N S 275 LYS C C N N 276 LYS O O N N 277 LYS CB C N N 278 LYS CG C N N 279 LYS CD C N N 280 LYS CE C N N 281 LYS NZ N N N 282 LYS OXT O N N 283 LYS H H N N 284 LYS H2 H N N 285 LYS HA H N N 286 LYS HB2 H N N 287 LYS HB3 H N N 288 LYS HG2 H N N 289 LYS HG3 H N N 290 LYS HD2 H N N 291 LYS HD3 H N N 292 LYS HE2 H N N 293 LYS HE3 H N N 294 LYS HZ1 H N N 295 LYS HZ2 H N N 296 LYS HZ3 H N N 297 LYS HXT H N N 298 MET N N N N 299 MET CA C N S 300 MET C C N N 301 MET O O N N 302 MET CB C N N 303 MET CG C N N 304 MET SD S N N 305 MET CE C N N 306 MET OXT O N N 307 MET H H N N 308 MET H2 H N N 309 MET HA H N N 310 MET HB2 H N N 311 MET HB3 H N N 312 MET HG2 H N N 313 MET HG3 H N N 314 MET HE1 H N N 315 MET HE2 H N N 316 MET HE3 H N N 317 MET HXT H N N 318 MUM C5 C N R 319 MUM C5M C N N 320 MUM C4 C N N 321 MUM O4 O N N 322 MUM N3 N N N 323 MUM C6 C N N 324 MUM N1 N N N 325 MUM C2 C N N 326 MUM O2 O N N 327 MUM "C1'" C N R 328 MUM "O4'" O N N 329 MUM "C4'" C N R 330 MUM "C3'" C N S 331 MUM "O3'" O N N 332 MUM "C2'" C N R 333 MUM "O2'" O N N 334 MUM "C5'" C N N 335 MUM "O5'" O N N 336 MUM P P N N 337 MUM O2P O N N 338 MUM O1P O N N 339 MUM H1 H N N 340 MUM H2 H N N 341 MUM H3 H N N 342 MUM H4 H N N 343 MUM H5 H N N 344 MUM H6 H N N 345 MUM H7 H N N 346 MUM H8 H N N 347 MUM H9 H N N 348 MUM H10 H N N 349 MUM H11 H N N 350 MUM H12 H N N 351 MUM H13 H N N 352 MUM H14 H N N 353 MUM H15 H N N 354 MUM H16 H N N 355 MUM H17 H N N 356 PHE N N N N 357 PHE CA C N S 358 PHE C C N N 359 PHE O O N N 360 PHE CB C N N 361 PHE CG C Y N 362 PHE CD1 C Y N 363 PHE CD2 C Y N 364 PHE CE1 C Y N 365 PHE CE2 C Y N 366 PHE CZ C Y N 367 PHE OXT O N N 368 PHE H H N N 369 PHE H2 H N N 370 PHE HA H N N 371 PHE HB2 H N N 372 PHE HB3 H N N 373 PHE HD1 H N N 374 PHE HD2 H N N 375 PHE HE1 H N N 376 PHE HE2 H N N 377 PHE HZ H N N 378 PHE HXT H N N 379 PRO N N N N 380 PRO CA C N S 381 PRO C C N N 382 PRO O O N N 383 PRO CB C N N 384 PRO CG C N N 385 PRO CD C N N 386 PRO OXT O N N 387 PRO H H N N 388 PRO HA H N N 389 PRO HB2 H N N 390 PRO HB3 H N N 391 PRO HG2 H N N 392 PRO HG3 H N N 393 PRO HD2 H N N 394 PRO HD3 H N N 395 PRO HXT H N N 396 SAH N N N N 397 SAH CA C N S 398 SAH CB C N N 399 SAH CG C N N 400 SAH SD S N N 401 SAH C C N N 402 SAH O O N N 403 SAH OXT O N N 404 SAH "C5'" C N N 405 SAH "C4'" C N S 406 SAH "O4'" O N N 407 SAH "C3'" C N S 408 SAH "O3'" O N N 409 SAH "C2'" C N R 410 SAH "O2'" O N N 411 SAH "C1'" C N R 412 SAH N9 N Y N 413 SAH C8 C Y N 414 SAH N7 N Y N 415 SAH C5 C Y N 416 SAH C6 C Y N 417 SAH N6 N N N 418 SAH N1 N Y N 419 SAH C2 C Y N 420 SAH N3 N Y N 421 SAH C4 C Y N 422 SAH HN1 H N N 423 SAH HN2 H N N 424 SAH HA H N N 425 SAH HB1 H N N 426 SAH HB2 H N N 427 SAH HG1 H N N 428 SAH HG2 H N N 429 SAH HXT H N N 430 SAH "H5'1" H N N 431 SAH "H5'2" H N N 432 SAH "H4'" H N N 433 SAH "H3'" H N N 434 SAH "HO3'" H N N 435 SAH "H2'" H N N 436 SAH "HO2'" H N N 437 SAH "H1'" H N N 438 SAH H8 H N N 439 SAH HN61 H N N 440 SAH HN62 H N N 441 SAH H2 H N N 442 SER N N N N 443 SER CA C N S 444 SER C C N N 445 SER O O N N 446 SER CB C N N 447 SER OG O N N 448 SER OXT O N N 449 SER H H N N 450 SER H2 H N N 451 SER HA H N N 452 SER HB2 H N N 453 SER HB3 H N N 454 SER HG H N N 455 SER HXT H N N 456 THR N N N N 457 THR CA C N S 458 THR C C N N 459 THR O O N N 460 THR CB C N R 461 THR OG1 O N N 462 THR CG2 C N N 463 THR OXT O N N 464 THR H H N N 465 THR H2 H N N 466 THR HA H N N 467 THR HB H N N 468 THR HG1 H N N 469 THR HG21 H N N 470 THR HG22 H N N 471 THR HG23 H N N 472 THR HXT H N N 473 TRP N N N N 474 TRP CA C N S 475 TRP C C N N 476 TRP O O N N 477 TRP CB C N N 478 TRP CG C Y N 479 TRP CD1 C Y N 480 TRP CD2 C Y N 481 TRP NE1 N Y N 482 TRP CE2 C Y N 483 TRP CE3 C Y N 484 TRP CZ2 C Y N 485 TRP CZ3 C Y N 486 TRP CH2 C Y N 487 TRP OXT O N N 488 TRP H H N N 489 TRP H2 H N N 490 TRP HA H N N 491 TRP HB2 H N N 492 TRP HB3 H N N 493 TRP HD1 H N N 494 TRP HE1 H N N 495 TRP HE3 H N N 496 TRP HZ2 H N N 497 TRP HZ3 H N N 498 TRP HH2 H N N 499 TRP HXT H N N 500 TYR N N N N 501 TYR CA C N S 502 TYR C C N N 503 TYR O O N N 504 TYR CB C N N 505 TYR CG C Y N 506 TYR CD1 C Y N 507 TYR CD2 C Y N 508 TYR CE1 C Y N 509 TYR CE2 C Y N 510 TYR CZ C Y N 511 TYR OH O N N 512 TYR OXT O N N 513 TYR H H N N 514 TYR H2 H N N 515 TYR HA H N N 516 TYR HB2 H N N 517 TYR HB3 H N N 518 TYR HD1 H N N 519 TYR HD2 H N N 520 TYR HE1 H N N 521 TYR HE2 H N N 522 TYR HH H N N 523 TYR HXT H N N 524 U OP3 O N N 525 U P P N N 526 U OP1 O N N 527 U OP2 O N N 528 U "O5'" O N N 529 U "C5'" C N N 530 U "C4'" C N R 531 U "O4'" O N N 532 U "C3'" C N S 533 U "O3'" O N N 534 U "C2'" C N R 535 U "O2'" O N N 536 U "C1'" C N R 537 U N1 N N N 538 U C2 C N N 539 U O2 O N N 540 U N3 N N N 541 U C4 C N N 542 U O4 O N N 543 U C5 C N N 544 U C6 C N N 545 U HOP3 H N N 546 U HOP2 H N N 547 U "H5'" H N N 548 U "H5''" H N N 549 U "H4'" H N N 550 U "H3'" H N N 551 U "HO3'" H N N 552 U "H2'" H N N 553 U "HO2'" H N N 554 U "H1'" H N N 555 U H3 H N N 556 U H5 H N N 557 U H6 H N N 558 VAL N N N N 559 VAL CA C N S 560 VAL C C N N 561 VAL O O N N 562 VAL CB C N N 563 VAL CG1 C N N 564 VAL CG2 C N N 565 VAL OXT O N N 566 VAL H H N N 567 VAL H2 H N N 568 VAL HA H N N 569 VAL HB H N N 570 VAL HG11 H N N 571 VAL HG12 H N N 572 VAL HG13 H N N 573 VAL HG21 H N N 574 VAL HG22 H N N 575 VAL HG23 H N N 576 VAL HXT H N N 577 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 GLN N CA sing N N 158 GLN N H sing N N 159 GLN N H2 sing N N 160 GLN CA C sing N N 161 GLN CA CB sing N N 162 GLN CA HA sing N N 163 GLN C O doub N N 164 GLN C OXT sing N N 165 GLN CB CG sing N N 166 GLN CB HB2 sing N N 167 GLN CB HB3 sing N N 168 GLN CG CD sing N N 169 GLN CG HG2 sing N N 170 GLN CG HG3 sing N N 171 GLN CD OE1 doub N N 172 GLN CD NE2 sing N N 173 GLN NE2 HE21 sing N N 174 GLN NE2 HE22 sing N N 175 GLN OXT HXT sing N N 176 GLU N CA sing N N 177 GLU N H sing N N 178 GLU N H2 sing N N 179 GLU CA C sing N N 180 GLU CA CB sing N N 181 GLU CA HA sing N N 182 GLU C O doub N N 183 GLU C OXT sing N N 184 GLU CB CG sing N N 185 GLU CB HB2 sing N N 186 GLU CB HB3 sing N N 187 GLU CG CD sing N N 188 GLU CG HG2 sing N N 189 GLU CG HG3 sing N N 190 GLU CD OE1 doub N N 191 GLU CD OE2 sing N N 192 GLU OE2 HE2 sing N N 193 GLU OXT HXT sing N N 194 GLY N CA sing N N 195 GLY N H sing N N 196 GLY N H2 sing N N 197 GLY CA C sing N N 198 GLY CA HA2 sing N N 199 GLY CA HA3 sing N N 200 GLY C O doub N N 201 GLY C OXT sing N N 202 GLY OXT HXT sing N N 203 HIS N CA sing N N 204 HIS N H sing N N 205 HIS N H2 sing N N 206 HIS CA C sing N N 207 HIS CA CB sing N N 208 HIS CA HA sing N N 209 HIS C O doub N N 210 HIS C OXT sing N N 211 HIS CB CG sing N N 212 HIS CB HB2 sing N N 213 HIS CB HB3 sing N N 214 HIS CG ND1 sing Y N 215 HIS CG CD2 doub Y N 216 HIS ND1 CE1 doub Y N 217 HIS ND1 HD1 sing N N 218 HIS CD2 NE2 sing Y N 219 HIS CD2 HD2 sing N N 220 HIS CE1 NE2 sing Y N 221 HIS CE1 HE1 sing N N 222 HIS NE2 HE2 sing N N 223 HIS OXT HXT sing N N 224 ILE N CA sing N N 225 ILE N H sing N N 226 ILE N H2 sing N N 227 ILE CA C sing N N 228 ILE CA CB sing N N 229 ILE CA HA sing N N 230 ILE C O doub N N 231 ILE C OXT sing N N 232 ILE CB CG1 sing N N 233 ILE CB CG2 sing N N 234 ILE CB HB sing N N 235 ILE CG1 CD1 sing N N 236 ILE CG1 HG12 sing N N 237 ILE CG1 HG13 sing N N 238 ILE CG2 HG21 sing N N 239 ILE CG2 HG22 sing N N 240 ILE CG2 HG23 sing N N 241 ILE CD1 HD11 sing N N 242 ILE CD1 HD12 sing N N 243 ILE CD1 HD13 sing N N 244 ILE OXT HXT sing N N 245 LEU N CA sing N N 246 LEU N H sing N N 247 LEU N H2 sing N N 248 LEU CA C sing N N 249 LEU CA CB sing N N 250 LEU CA HA sing N N 251 LEU C O doub N N 252 LEU C OXT sing N N 253 LEU CB CG sing N N 254 LEU CB HB2 sing N N 255 LEU CB HB3 sing N N 256 LEU CG CD1 sing N N 257 LEU CG CD2 sing N N 258 LEU CG HG sing N N 259 LEU CD1 HD11 sing N N 260 LEU CD1 HD12 sing N N 261 LEU CD1 HD13 sing N N 262 LEU CD2 HD21 sing N N 263 LEU CD2 HD22 sing N N 264 LEU CD2 HD23 sing N N 265 LEU OXT HXT sing N N 266 LYS N CA sing N N 267 LYS N H sing N N 268 LYS N H2 sing N N 269 LYS CA C sing N N 270 LYS CA CB sing N N 271 LYS CA HA sing N N 272 LYS C O doub N N 273 LYS C OXT sing N N 274 LYS CB CG sing N N 275 LYS CB HB2 sing N N 276 LYS CB HB3 sing N N 277 LYS CG CD sing N N 278 LYS CG HG2 sing N N 279 LYS CG HG3 sing N N 280 LYS CD CE sing N N 281 LYS CD HD2 sing N N 282 LYS CD HD3 sing N N 283 LYS CE NZ sing N N 284 LYS CE HE2 sing N N 285 LYS CE HE3 sing N N 286 LYS NZ HZ1 sing N N 287 LYS NZ HZ2 sing N N 288 LYS NZ HZ3 sing N N 289 LYS OXT HXT sing N N 290 MET N CA sing N N 291 MET N H sing N N 292 MET N H2 sing N N 293 MET CA C sing N N 294 MET CA CB sing N N 295 MET CA HA sing N N 296 MET C O doub N N 297 MET C OXT sing N N 298 MET CB CG sing N N 299 MET CB HB2 sing N N 300 MET CB HB3 sing N N 301 MET CG SD sing N N 302 MET CG HG2 sing N N 303 MET CG HG3 sing N N 304 MET SD CE sing N N 305 MET CE HE1 sing N N 306 MET CE HE2 sing N N 307 MET CE HE3 sing N N 308 MET OXT HXT sing N N 309 MUM O4 C4 doub N N 310 MUM C5M C5 sing N N 311 MUM C5 C4 sing N N 312 MUM C5 C6 sing N N 313 MUM C4 N3 sing N N 314 MUM N3 C2 sing N N 315 MUM C6 N1 sing N N 316 MUM C2 N1 sing N N 317 MUM C2 O2 doub N N 318 MUM N1 "C1'" sing N N 319 MUM "C1'" "O4'" sing N N 320 MUM "C1'" "C2'" sing N N 321 MUM "O4'" "C4'" sing N N 322 MUM "C2'" "O2'" sing N N 323 MUM "C2'" "C3'" sing N N 324 MUM "C4'" "C3'" sing N N 325 MUM "C4'" "C5'" sing N N 326 MUM "C3'" "O3'" sing N N 327 MUM "O5'" "C5'" sing N N 328 MUM "O5'" P sing N N 329 MUM O2P P sing N N 330 MUM P O1P sing N N 331 MUM C5 H1 sing N N 332 MUM C5M H2 sing N N 333 MUM C5M H3 sing N N 334 MUM C5M H4 sing N N 335 MUM N3 H5 sing N N 336 MUM C6 H6 sing N N 337 MUM C6 H7 sing N N 338 MUM "C1'" H8 sing N N 339 MUM "C4'" H9 sing N N 340 MUM "C3'" H10 sing N N 341 MUM "O3'" H11 sing N N 342 MUM "C2'" H12 sing N N 343 MUM "O2'" H13 sing N N 344 MUM "C5'" H14 sing N N 345 MUM "C5'" H15 sing N N 346 MUM O2P H16 sing N N 347 MUM O1P H17 sing N N 348 PHE N CA sing N N 349 PHE N H sing N N 350 PHE N H2 sing N N 351 PHE CA C sing N N 352 PHE CA CB sing N N 353 PHE CA HA sing N N 354 PHE C O doub N N 355 PHE C OXT sing N N 356 PHE CB CG sing N N 357 PHE CB HB2 sing N N 358 PHE CB HB3 sing N N 359 PHE CG CD1 doub Y N 360 PHE CG CD2 sing Y N 361 PHE CD1 CE1 sing Y N 362 PHE CD1 HD1 sing N N 363 PHE CD2 CE2 doub Y N 364 PHE CD2 HD2 sing N N 365 PHE CE1 CZ doub Y N 366 PHE CE1 HE1 sing N N 367 PHE CE2 CZ sing Y N 368 PHE CE2 HE2 sing N N 369 PHE CZ HZ sing N N 370 PHE OXT HXT sing N N 371 PRO N CA sing N N 372 PRO N CD sing N N 373 PRO N H sing N N 374 PRO CA C sing N N 375 PRO CA CB sing N N 376 PRO CA HA sing N N 377 PRO C O doub N N 378 PRO C OXT sing N N 379 PRO CB CG sing N N 380 PRO CB HB2 sing N N 381 PRO CB HB3 sing N N 382 PRO CG CD sing N N 383 PRO CG HG2 sing N N 384 PRO CG HG3 sing N N 385 PRO CD HD2 sing N N 386 PRO CD HD3 sing N N 387 PRO OXT HXT sing N N 388 SAH N CA sing N N 389 SAH N HN1 sing N N 390 SAH N HN2 sing N N 391 SAH CA CB sing N N 392 SAH CA C sing N N 393 SAH CA HA sing N N 394 SAH CB CG sing N N 395 SAH CB HB1 sing N N 396 SAH CB HB2 sing N N 397 SAH CG SD sing N N 398 SAH CG HG1 sing N N 399 SAH CG HG2 sing N N 400 SAH SD "C5'" sing N N 401 SAH C O doub N N 402 SAH C OXT sing N N 403 SAH OXT HXT sing N N 404 SAH "C5'" "C4'" sing N N 405 SAH "C5'" "H5'1" sing N N 406 SAH "C5'" "H5'2" sing N N 407 SAH "C4'" "O4'" sing N N 408 SAH "C4'" "C3'" sing N N 409 SAH "C4'" "H4'" sing N N 410 SAH "O4'" "C1'" sing N N 411 SAH "C3'" "O3'" sing N N 412 SAH "C3'" "C2'" sing N N 413 SAH "C3'" "H3'" sing N N 414 SAH "O3'" "HO3'" sing N N 415 SAH "C2'" "O2'" sing N N 416 SAH "C2'" "C1'" sing N N 417 SAH "C2'" "H2'" sing N N 418 SAH "O2'" "HO2'" sing N N 419 SAH "C1'" N9 sing N N 420 SAH "C1'" "H1'" sing N N 421 SAH N9 C8 sing Y N 422 SAH N9 C4 sing Y N 423 SAH C8 N7 doub Y N 424 SAH C8 H8 sing N N 425 SAH N7 C5 sing Y N 426 SAH C5 C6 sing Y N 427 SAH C5 C4 doub Y N 428 SAH C6 N6 sing N N 429 SAH C6 N1 doub Y N 430 SAH N6 HN61 sing N N 431 SAH N6 HN62 sing N N 432 SAH N1 C2 sing Y N 433 SAH C2 N3 doub Y N 434 SAH C2 H2 sing N N 435 SAH N3 C4 sing Y N 436 SER N CA sing N N 437 SER N H sing N N 438 SER N H2 sing N N 439 SER CA C sing N N 440 SER CA CB sing N N 441 SER CA HA sing N N 442 SER C O doub N N 443 SER C OXT sing N N 444 SER CB OG sing N N 445 SER CB HB2 sing N N 446 SER CB HB3 sing N N 447 SER OG HG sing N N 448 SER OXT HXT sing N N 449 THR N CA sing N N 450 THR N H sing N N 451 THR N H2 sing N N 452 THR CA C sing N N 453 THR CA CB sing N N 454 THR CA HA sing N N 455 THR C O doub N N 456 THR C OXT sing N N 457 THR CB OG1 sing N N 458 THR CB CG2 sing N N 459 THR CB HB sing N N 460 THR OG1 HG1 sing N N 461 THR CG2 HG21 sing N N 462 THR CG2 HG22 sing N N 463 THR CG2 HG23 sing N N 464 THR OXT HXT sing N N 465 TRP N CA sing N N 466 TRP N H sing N N 467 TRP N H2 sing N N 468 TRP CA C sing N N 469 TRP CA CB sing N N 470 TRP CA HA sing N N 471 TRP C O doub N N 472 TRP C OXT sing N N 473 TRP CB CG sing N N 474 TRP CB HB2 sing N N 475 TRP CB HB3 sing N N 476 TRP CG CD1 doub Y N 477 TRP CG CD2 sing Y N 478 TRP CD1 NE1 sing Y N 479 TRP CD1 HD1 sing N N 480 TRP CD2 CE2 doub Y N 481 TRP CD2 CE3 sing Y N 482 TRP NE1 CE2 sing Y N 483 TRP NE1 HE1 sing N N 484 TRP CE2 CZ2 sing Y N 485 TRP CE3 CZ3 doub Y N 486 TRP CE3 HE3 sing N N 487 TRP CZ2 CH2 doub Y N 488 TRP CZ2 HZ2 sing N N 489 TRP CZ3 CH2 sing Y N 490 TRP CZ3 HZ3 sing N N 491 TRP CH2 HH2 sing N N 492 TRP OXT HXT sing N N 493 TYR N CA sing N N 494 TYR N H sing N N 495 TYR N H2 sing N N 496 TYR CA C sing N N 497 TYR CA CB sing N N 498 TYR CA HA sing N N 499 TYR C O doub N N 500 TYR C OXT sing N N 501 TYR CB CG sing N N 502 TYR CB HB2 sing N N 503 TYR CB HB3 sing N N 504 TYR CG CD1 doub Y N 505 TYR CG CD2 sing Y N 506 TYR CD1 CE1 sing Y N 507 TYR CD1 HD1 sing N N 508 TYR CD2 CE2 doub Y N 509 TYR CD2 HD2 sing N N 510 TYR CE1 CZ doub Y N 511 TYR CE1 HE1 sing N N 512 TYR CE2 CZ sing Y N 513 TYR CE2 HE2 sing N N 514 TYR CZ OH sing N N 515 TYR OH HH sing N N 516 TYR OXT HXT sing N N 517 U OP3 P sing N N 518 U OP3 HOP3 sing N N 519 U P OP1 doub N N 520 U P OP2 sing N N 521 U P "O5'" sing N N 522 U OP2 HOP2 sing N N 523 U "O5'" "C5'" sing N N 524 U "C5'" "C4'" sing N N 525 U "C5'" "H5'" sing N N 526 U "C5'" "H5''" sing N N 527 U "C4'" "O4'" sing N N 528 U "C4'" "C3'" sing N N 529 U "C4'" "H4'" sing N N 530 U "O4'" "C1'" sing N N 531 U "C3'" "O3'" sing N N 532 U "C3'" "C2'" sing N N 533 U "C3'" "H3'" sing N N 534 U "O3'" "HO3'" sing N N 535 U "C2'" "O2'" sing N N 536 U "C2'" "C1'" sing N N 537 U "C2'" "H2'" sing N N 538 U "O2'" "HO2'" sing N N 539 U "C1'" N1 sing N N 540 U "C1'" "H1'" sing N N 541 U N1 C2 sing N N 542 U N1 C6 sing N N 543 U C2 O2 doub N N 544 U C2 N3 sing N N 545 U N3 C4 sing N N 546 U N3 H3 sing N N 547 U C4 O4 doub N N 548 U C4 C5 sing N N 549 U C5 C6 doub N N 550 U C5 H5 sing N N 551 U C6 H6 sing N N 552 VAL N CA sing N N 553 VAL N H sing N N 554 VAL N H2 sing N N 555 VAL CA C sing N N 556 VAL CA CB sing N N 557 VAL CA HA sing N N 558 VAL C O doub N N 559 VAL C OXT sing N N 560 VAL CB CG1 sing N N 561 VAL CB CG2 sing N N 562 VAL CB HB sing N N 563 VAL CG1 HG11 sing N N 564 VAL CG1 HG12 sing N N 565 VAL CG1 HG13 sing N N 566 VAL CG2 HG21 sing N N 567 VAL CG2 HG22 sing N N 568 VAL CG2 HG23 sing N N 569 VAL OXT HXT sing N N 570 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name S-ADENOSYL-L-HOMOCYSTEINE _pdbx_entity_nonpoly.comp_id SAH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5XJ1 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? #