HEADER ISOMERASE/DNA 18-APR-18 5ZQF TITLE CRYSTAL STRUCTURE OF HUMAN TOPOISOMERASE II BETA IN COMPLEX WITH 5- TITLE 2 IODOURIDINE-CONTAINING-DNA IN SPACE GROUP P3221 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE 2-BETA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA TOPOISOMERASE II,BETA ISOZYME; COMPND 5 EC: 5.99.1.3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA/RNA (5'-D(P*AP*GP*C)-R(P*(IU))-D(P*CP*GP*GP*C)- COMPND 13 R(P*(IU))-3'); COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TOP2B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET51B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS TYPE II TOPOISOMERASE, CLEAVAGE COMPLEX, DNA-GATE, ISOMERASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.F.CHEN,Y.R.WANG,N.L.CHAN REVDAT 3 22-NOV-23 5ZQF 1 REMARK REVDAT 2 20-FEB-19 5ZQF 1 JRNL REVDAT 1 08-AUG-18 5ZQF 0 JRNL AUTH S.F.CHEN,N.L.HUANG,J.H.LIN,C.C.WU,Y.R.WANG,Y.J.YU, JRNL AUTH 2 M.K.GILSON,N.L.CHAN JRNL TITL STRUCTURAL INSIGHTS INTO THE GATING OF DNA PASSAGE BY THE JRNL TITL 2 TOPOISOMERASE II DNA-GATE. JRNL REF NAT COMMUN V. 9 3085 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30082834 JRNL DOI 10.1038/S41467-018-05406-Y REMARK 2 REMARK 2 RESOLUTION. 3.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 11734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9039 - 7.6167 0.99 1395 159 0.1768 0.2215 REMARK 3 2 7.6167 - 6.1029 1.00 1338 148 0.2219 0.2403 REMARK 3 3 6.1029 - 5.3486 1.00 1318 150 0.2191 0.2863 REMARK 3 4 5.3486 - 4.8674 1.00 1325 148 0.1970 0.2347 REMARK 3 5 4.8674 - 4.5229 1.00 1289 142 0.1812 0.2322 REMARK 3 6 4.5229 - 4.2590 1.00 1303 146 0.2047 0.2586 REMARK 3 7 4.2590 - 4.0475 1.00 1299 142 0.2232 0.2684 REMARK 3 8 4.0475 - 3.8727 1.00 1289 143 0.2578 0.3044 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5891 REMARK 3 ANGLE : 0.537 8075 REMARK 3 CHIRALITY : 0.040 918 REMARK 3 PLANARITY : 0.004 981 REMARK 3 DIHEDRAL : 12.125 3428 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 452 THROUGH 502 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.8497 33.5264 -59.9658 REMARK 3 T TENSOR REMARK 3 T11: 1.2488 T22: 1.1303 REMARK 3 T33: 0.8814 T12: 0.0849 REMARK 3 T13: 0.1421 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 0.0060 L22: 0.5617 REMARK 3 L33: 0.4812 L12: -0.0768 REMARK 3 L13: -0.0655 L23: 0.5742 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: -0.2314 S13: 0.3624 REMARK 3 S21: -0.2669 S22: -0.0432 S23: -0.3375 REMARK 3 S31: -1.3578 S32: 0.4862 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 503 THROUGH 513 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.5519 26.4567 -40.2783 REMARK 3 T TENSOR REMARK 3 T11: 0.8122 T22: 1.9677 REMARK 3 T33: 0.6992 T12: 0.1879 REMARK 3 T13: -0.0077 T23: -0.2132 REMARK 3 L TENSOR REMARK 3 L11: 3.0556 L22: 4.6996 REMARK 3 L33: 0.2722 L12: 0.1572 REMARK 3 L13: 0.6418 L23: -0.7689 REMARK 3 S TENSOR REMARK 3 S11: -1.0579 S12: 0.1319 S13: -0.2016 REMARK 3 S21: -0.0831 S22: -1.0086 S23: 0.3678 REMARK 3 S31: 0.1802 S32: 0.1884 S33: -0.6643 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 514 THROUGH 588 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.1714 29.5850 -51.4580 REMARK 3 T TENSOR REMARK 3 T11: 0.8138 T22: 1.0120 REMARK 3 T33: 0.7855 T12: 0.2130 REMARK 3 T13: -0.1010 T23: -0.1532 REMARK 3 L TENSOR REMARK 3 L11: 0.4707 L22: 0.8572 REMARK 3 L33: 0.8189 L12: -0.1530 REMARK 3 L13: 0.2450 L23: -0.9195 REMARK 3 S TENSOR REMARK 3 S11: -0.1997 S12: -0.3229 S13: 0.0198 REMARK 3 S21: -0.1007 S22: -0.0898 S23: -0.1076 REMARK 3 S31: -0.5993 S32: -0.6136 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 589 THROUGH 596 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.3393 13.2368 -59.6213 REMARK 3 T TENSOR REMARK 3 T11: 1.3426 T22: 2.1019 REMARK 3 T33: 1.2852 T12: 0.3437 REMARK 3 T13: 0.1806 T23: -0.2136 REMARK 3 L TENSOR REMARK 3 L11: 0.6420 L22: 0.3206 REMARK 3 L33: 0.1783 L12: 0.4410 REMARK 3 L13: 0.3307 L23: 0.2459 REMARK 3 S TENSOR REMARK 3 S11: 0.3374 S12: 0.1792 S13: -0.7146 REMARK 3 S21: 0.0777 S22: 0.5182 S23: -0.6860 REMARK 3 S31: 0.4026 S32: 1.1520 S33: -0.0096 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 603 THROUGH 607 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.9898 8.3404 -61.6102 REMARK 3 T TENSOR REMARK 3 T11: 2.9554 T22: 0.9417 REMARK 3 T33: 3.0579 T12: 0.1277 REMARK 3 T13: -1.2381 T23: -0.0784 REMARK 3 L TENSOR REMARK 3 L11: 0.0171 L22: 0.1066 REMARK 3 L33: 0.7584 L12: 0.0445 REMARK 3 L13: 0.1149 L23: 0.2880 REMARK 3 S TENSOR REMARK 3 S11: 0.2229 S12: -0.0060 S13: -0.1868 REMARK 3 S21: 0.4826 S22: 0.0195 S23: 1.2080 REMARK 3 S31: -0.0611 S32: -0.1896 S33: 0.0770 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 608 THROUGH 615 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5053 0.5986 -58.0712 REMARK 3 T TENSOR REMARK 3 T11: 3.1165 T22: 2.2111 REMARK 3 T33: 2.9882 T12: 0.3055 REMARK 3 T13: 0.6355 T23: 0.2170 REMARK 3 L TENSOR REMARK 3 L11: 0.0062 L22: 0.0167 REMARK 3 L33: 0.0239 L12: -0.0000 REMARK 3 L13: -0.0120 L23: 0.0014 REMARK 3 S TENSOR REMARK 3 S11: -0.5133 S12: -0.5917 S13: 0.3169 REMARK 3 S21: -0.0259 S22: -0.6488 S23: -0.2831 REMARK 3 S31: -0.1646 S32: -0.2325 S33: -0.0011 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 625 THROUGH 636 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.2614 13.5682 -56.3072 REMARK 3 T TENSOR REMARK 3 T11: 1.4777 T22: 1.6892 REMARK 3 T33: 1.7569 T12: 0.1957 REMARK 3 T13: -0.1251 T23: -0.1464 REMARK 3 L TENSOR REMARK 3 L11: 0.0103 L22: -0.0000 REMARK 3 L33: 0.0808 L12: -0.0094 REMARK 3 L13: -0.0358 L23: 0.0203 REMARK 3 S TENSOR REMARK 3 S11: -0.4495 S12: -0.2435 S13: 0.3374 REMARK 3 S21: 0.0891 S22: 0.1822 S23: 0.6855 REMARK 3 S31: 0.1740 S32: 0.1377 S33: 0.0003 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 637 THROUGH 645 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9041 21.2571 -65.7561 REMARK 3 T TENSOR REMARK 3 T11: 2.5080 T22: 1.4333 REMARK 3 T33: 1.8132 T12: 0.1734 REMARK 3 T13: -0.0458 T23: 0.2635 REMARK 3 L TENSOR REMARK 3 L11: 0.0048 L22: 0.0125 REMARK 3 L33: 0.0153 L12: -0.0052 REMARK 3 L13: 0.0039 L23: 0.0107 REMARK 3 S TENSOR REMARK 3 S11: -0.4236 S12: -0.3550 S13: -0.2274 REMARK 3 S21: 0.2257 S22: -0.0727 S23: -0.1093 REMARK 3 S31: -0.0778 S32: 0.3104 S33: -0.0003 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 646 THROUGH 702 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.4993 9.6627 -48.5574 REMARK 3 T TENSOR REMARK 3 T11: 1.1737 T22: 1.2475 REMARK 3 T33: 0.8985 T12: 0.0410 REMARK 3 T13: 0.0200 T23: -0.1358 REMARK 3 L TENSOR REMARK 3 L11: 0.0354 L22: 0.5826 REMARK 3 L33: 0.5809 L12: -0.2143 REMARK 3 L13: 0.2590 L23: -0.6406 REMARK 3 S TENSOR REMARK 3 S11: -0.4886 S12: 0.3173 S13: -0.2291 REMARK 3 S21: -0.0697 S22: -0.0631 S23: -0.6646 REMARK 3 S31: 0.5713 S32: -0.9312 S33: -0.0142 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 707 THROUGH 771 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0345 9.8818 -38.6872 REMARK 3 T TENSOR REMARK 3 T11: 0.7999 T22: 1.0049 REMARK 3 T33: 0.9072 T12: -0.0863 REMARK 3 T13: 0.0635 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.2332 L22: 0.8489 REMARK 3 L33: 0.6351 L12: -0.3390 REMARK 3 L13: -0.0844 L23: 0.6761 REMARK 3 S TENSOR REMARK 3 S11: -0.0500 S12: 0.0607 S13: -0.2498 REMARK 3 S21: -0.2291 S22: -0.0689 S23: -0.1788 REMARK 3 S31: -0.0390 S32: -0.2663 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 772 THROUGH 913 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2935 8.2248 -23.1150 REMARK 3 T TENSOR REMARK 3 T11: 0.5453 T22: 0.6598 REMARK 3 T33: 0.7673 T12: -0.0475 REMARK 3 T13: 0.0129 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 0.4361 L22: 2.5637 REMARK 3 L33: 1.8566 L12: 0.4784 REMARK 3 L13: -0.5972 L23: -0.6770 REMARK 3 S TENSOR REMARK 3 S11: 0.0752 S12: -0.0657 S13: 0.0522 REMARK 3 S21: 0.2165 S22: -0.1415 S23: -0.1322 REMARK 3 S31: -0.2446 S32: 0.3159 S33: 0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 914 THROUGH 1012 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.1016 29.6470 -4.7058 REMARK 3 T TENSOR REMARK 3 T11: 0.9826 T22: 0.8989 REMARK 3 T33: 0.8286 T12: -0.1870 REMARK 3 T13: 0.0499 T23: -0.0645 REMARK 3 L TENSOR REMARK 3 L11: 0.5237 L22: 1.0200 REMARK 3 L33: 1.3539 L12: -0.5527 REMARK 3 L13: -0.7525 L23: -0.0005 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: -0.0349 S13: -0.0117 REMARK 3 S21: -0.0133 S22: -0.1440 S23: 0.1779 REMARK 3 S31: -0.1445 S32: -0.1413 S33: 0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1013 THROUGH 1076 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6745 -11.0645 -26.3177 REMARK 3 T TENSOR REMARK 3 T11: 1.1170 T22: 0.6658 REMARK 3 T33: 0.9709 T12: -0.1320 REMARK 3 T13: 0.3262 T23: 0.2838 REMARK 3 L TENSOR REMARK 3 L11: 1.0540 L22: 1.0967 REMARK 3 L33: 1.6569 L12: 1.1048 REMARK 3 L13: 0.3385 L23: 0.1162 REMARK 3 S TENSOR REMARK 3 S11: -0.1979 S12: -0.0223 S13: -0.5745 REMARK 3 S21: -0.4828 S22: -0.1256 S23: 0.3120 REMARK 3 S31: 0.9225 S32: -0.1874 S33: -2.1945 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1077 THROUGH 1111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7113 -25.8938 -42.3516 REMARK 3 T TENSOR REMARK 3 T11: 2.0050 T22: 0.6124 REMARK 3 T33: 2.2745 T12: 0.0810 REMARK 3 T13: 0.6418 T23: -0.3048 REMARK 3 L TENSOR REMARK 3 L11: 2.2061 L22: 1.3991 REMARK 3 L33: 1.8193 L12: -0.9715 REMARK 3 L13: 1.4040 L23: -0.1088 REMARK 3 S TENSOR REMARK 3 S11: -0.1348 S12: -0.3039 S13: -1.6827 REMARK 3 S21: -0.3269 S22: 0.0286 S23: -0.7245 REMARK 3 S31: 0.2315 S32: 0.1344 S33: 0.5843 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1135 THROUGH 1150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6022 -19.8057 -38.4211 REMARK 3 T TENSOR REMARK 3 T11: 1.9244 T22: 1.4184 REMARK 3 T33: 2.5258 T12: 0.3248 REMARK 3 T13: 0.5835 T23: 0.1356 REMARK 3 L TENSOR REMARK 3 L11: -0.0074 L22: 0.0167 REMARK 3 L33: 0.0576 L12: -0.0056 REMARK 3 L13: 0.0142 L23: 0.0578 REMARK 3 S TENSOR REMARK 3 S11: -1.2816 S12: 0.3254 S13: -0.2964 REMARK 3 S21: -0.0687 S22: -0.7121 S23: -0.3191 REMARK 3 S31: 1.0170 S32: 0.0890 S33: -0.0051 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1151 THROUGH 1201 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2967 -9.2134 -16.3221 REMARK 3 T TENSOR REMARK 3 T11: 1.1705 T22: 0.9383 REMARK 3 T33: 1.2367 T12: 0.0475 REMARK 3 T13: 0.1140 T23: 0.1991 REMARK 3 L TENSOR REMARK 3 L11: 0.1038 L22: -0.0119 REMARK 3 L33: 0.2366 L12: 0.0467 REMARK 3 L13: -0.2868 L23: -0.1206 REMARK 3 S TENSOR REMARK 3 S11: -0.2791 S12: -0.5537 S13: 0.2025 REMARK 3 S21: -0.0237 S22: 0.2381 S23: -0.3390 REMARK 3 S31: 0.3384 S32: 0.4812 S33: 0.0001 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.5317 22.4307 -30.1947 REMARK 3 T TENSOR REMARK 3 T11: 1.3748 T22: 1.3337 REMARK 3 T33: 1.4515 T12: 0.2392 REMARK 3 T13: 0.2808 T23: 0.0571 REMARK 3 L TENSOR REMARK 3 L11: 0.0101 L22: -0.0012 REMARK 3 L33: 0.0570 L12: -0.0166 REMARK 3 L13: 0.0518 L23: 0.0053 REMARK 3 S TENSOR REMARK 3 S11: 0.3213 S12: 0.1421 S13: 1.1422 REMARK 3 S21: 0.0492 S22: 0.5037 S23: -0.1559 REMARK 3 S31: -1.8593 S32: -0.3616 S33: 0.0006 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 12 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.4165 30.4052 -37.4482 REMARK 3 T TENSOR REMARK 3 T11: 1.7677 T22: 2.1441 REMARK 3 T33: 1.5107 T12: -0.3714 REMARK 3 T13: 0.1349 T23: -0.1064 REMARK 3 L TENSOR REMARK 3 L11: 0.0366 L22: 0.0398 REMARK 3 L33: 0.0346 L12: 0.0547 REMARK 3 L13: 0.0167 L23: 0.0200 REMARK 3 S TENSOR REMARK 3 S11: -0.5285 S12: -0.2735 S13: 1.2762 REMARK 3 S21: 0.2969 S22: 0.2282 S23: -1.3438 REMARK 3 S31: 0.0417 S32: 0.0790 S33: 0.0021 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.8725 17.1297 -28.4946 REMARK 3 T TENSOR REMARK 3 T11: 1.2411 T22: 1.3194 REMARK 3 T33: 1.0589 T12: -0.4397 REMARK 3 T13: 0.0718 T23: -0.0925 REMARK 3 L TENSOR REMARK 3 L11: -0.0148 L22: -0.0093 REMARK 3 L33: 0.0266 L12: 0.0053 REMARK 3 L13: -0.0001 L23: 0.0051 REMARK 3 S TENSOR REMARK 3 S11: -0.3884 S12: -1.0259 S13: 1.3941 REMARK 3 S21: 1.2991 S22: -0.5752 S23: 0.1399 REMARK 3 S31: -0.8338 S32: -0.7018 S33: -0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZQF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007491. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11767 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.870 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.69600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3QX3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM ACETATE, 2-(N REMARK 280 -MORPHOLINO)ETHANESULFONIC, 2-METHYL-2,4-PENTANEDIOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 154.32400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.16200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.16200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 154.32400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -77.16200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 419 REMARK 465 ALA A 420 REMARK 465 SER A 421 REMARK 465 TRP A 422 REMARK 465 SER A 423 REMARK 465 HIS A 424 REMARK 465 PRO A 425 REMARK 465 GLN A 426 REMARK 465 PHE A 427 REMARK 465 GLU A 428 REMARK 465 LYS A 429 REMARK 465 GLY A 430 REMARK 465 ALA A 431 REMARK 465 ASP A 432 REMARK 465 ASP A 433 REMARK 465 ASP A 434 REMARK 465 ASP A 435 REMARK 465 LYS A 436 REMARK 465 VAL A 437 REMARK 465 PRO A 438 REMARK 465 ASP A 439 REMARK 465 PRO A 440 REMARK 465 THR A 441 REMARK 465 SER A 442 REMARK 465 VAL A 443 REMARK 465 ASP A 444 REMARK 465 SER A 445 REMARK 465 VAL A 446 REMARK 465 LYS A 447 REMARK 465 TYR A 448 REMARK 465 SER A 449 REMARK 465 LYS A 450 REMARK 465 ILE A 451 REMARK 465 SER A 597 REMARK 465 LYS A 598 REMARK 465 ASN A 599 REMARK 465 LYS A 600 REMARK 465 GLN A 601 REMARK 465 GLU A 602 REMARK 465 LYS A 616 REMARK 465 HIS A 617 REMARK 465 ILE A 618 REMARK 465 GLU A 619 REMARK 465 ASN A 620 REMARK 465 GLN A 621 REMARK 465 LYS A 622 REMARK 465 ALA A 623 REMARK 465 TRP A 624 REMARK 465 GLY A 703 REMARK 465 THR A 704 REMARK 465 ALA A 705 REMARK 465 THR A 706 REMARK 465 LYS A 1112 REMARK 465 ALA A 1113 REMARK 465 ALA A 1114 REMARK 465 GLU A 1115 REMARK 465 GLU A 1116 REMARK 465 ASP A 1117 REMARK 465 GLU A 1118 REMARK 465 THR A 1119 REMARK 465 GLN A 1120 REMARK 465 ASN A 1121 REMARK 465 GLN A 1122 REMARK 465 HIS A 1123 REMARK 465 ASP A 1124 REMARK 465 ASP A 1125 REMARK 465 SER A 1126 REMARK 465 SER A 1127 REMARK 465 SER A 1128 REMARK 465 ASP A 1129 REMARK 465 SER A 1130 REMARK 465 GLY A 1131 REMARK 465 THR A 1132 REMARK 465 PRO A 1133 REMARK 465 SER A 1134 REMARK 465 GLY A 1202 REMARK 465 ALA A 1203 REMARK 465 PRO A 1204 REMARK 465 GLY A 1205 REMARK 465 PHE A 1206 REMARK 465 SER A 1207 REMARK 465 SER A 1208 REMARK 465 ILE A 1209 REMARK 465 SER A 1210 REMARK 465 ALA A 1211 REMARK 465 HIS A 1212 REMARK 465 HIS A 1213 REMARK 465 HIS A 1214 REMARK 465 HIS A 1215 REMARK 465 HIS A 1216 REMARK 465 HIS A 1217 REMARK 465 HIS A 1218 REMARK 465 HIS A 1219 REMARK 465 HIS A 1220 REMARK 465 HIS A 1221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 452 CG CD CE NZ REMARK 470 LYS A 456 CG CD CE NZ REMARK 470 LYS A 466 CG CD CE NZ REMARK 470 GLU A 470 CG CD OE1 OE2 REMARK 470 ILE A 492 CG1 CG2 CD1 REMARK 470 ARG A 494 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 503 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 515 CG CD CE NZ REMARK 470 GLU A 519 CG CD OE1 OE2 REMARK 470 LYS A 528 CG CD CE NZ REMARK 470 GLN A 533 CG CD OE1 NE2 REMARK 470 LYS A 535 CG CD CE NZ REMARK 470 ASP A 539 OD1 OD2 REMARK 470 ASP A 540 OD1 OD2 REMARK 470 GLU A 542 CG CD OE1 OE2 REMARK 470 LYS A 545 CG CD CE NZ REMARK 470 SER A 579 OG REMARK 470 THR A 591 OG1 CG2 REMARK 470 LYS A 595 CG CD CE NZ REMARK 470 LEU A 603 CD1 CD2 REMARK 470 GLU A 610 CG CD OE1 OE2 REMARK 470 GLU A 613 CD OE1 OE2 REMARK 470 LYS A 625 CG CD CE NZ REMARK 470 LYS A 627 CG CD CE NZ REMARK 470 THR A 634 OG1 CG2 REMARK 470 SER A 635 OG REMARK 470 THR A 636 OG1 CG2 REMARK 470 LYS A 638 CG CD CE NZ REMARK 470 LYS A 641 CE NZ REMARK 470 GLU A 642 CD OE1 OE2 REMARK 470 GLU A 648 CG CD OE1 OE2 REMARK 470 ARG A 649 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 660 CG CD OE1 OE2 REMARK 470 LYS A 671 CG CD CE NZ REMARK 470 GLU A 679 CG CD OE1 OE2 REMARK 470 GLU A 686 CG CD OE1 OE2 REMARK 470 ARG A 689 NE CZ NH1 NH2 REMARK 470 GLN A 690 CD OE1 NE2 REMARK 470 ARG A 692 NE CZ NH1 NH2 REMARK 470 LEU A 693 CG CD1 CD2 REMARK 470 HIS A 694 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 696 CG CD1 CD2 REMARK 470 PRO A 697 CG CD REMARK 470 GLU A 698 CG CD OE1 OE2 REMARK 470 GLN A 699 CG CD OE1 NE2 REMARK 470 LYS A 755 CG CD CE NZ REMARK 470 ARG A 756 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 758 CG1 CG2 REMARK 470 GLU A 769 CG CD OE1 OE2 REMARK 470 GLU A 777 CG CD OE1 OE2 REMARK 470 ASP A 815 CG OD1 OD2 REMARK 470 SER A 818 OG REMARK 470 ARG A 820 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 848 OD1 OD2 REMARK 470 ASN A 849 CG OD1 ND2 REMARK 470 GLN A 920 CG CD OE1 NE2 REMARK 470 GLU A 957 CG CD OE1 OE2 REMARK 470 LYS A 965 CG CD CE NZ REMARK 470 THR A 966 OG1 CG2 REMARK 470 LYS A 974 CG CD CE NZ REMARK 470 GLU A 991 CD OE1 OE2 REMARK 470 LYS A1003 CG CD CE NZ REMARK 470 THR A1012 OG1 CG2 REMARK 470 CYS A1013 SG REMARK 470 SER A1015 OG REMARK 470 LYS A1026 CG CD CE NZ REMARK 470 LYS A1036 CG CD CE NZ REMARK 470 GLU A1051 CG CD OE1 OE2 REMARK 470 ARG A1069 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1074 CG CD CE NZ REMARK 470 GLN A1076 CG CD OE1 NE2 REMARK 470 LYS A1078 CG CD CE NZ REMARK 470 THR A1080 OG1 CG2 REMARK 470 GLU A1082 CG CD OE1 OE2 REMARK 470 ARG A1084 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1087 CG CD CE NZ REMARK 470 ASP A1088 CG OD1 OD2 REMARK 470 LEU A1089 CD1 CD2 REMARK 470 ILE A1090 CG1 CG2 CD1 REMARK 470 GLN A1091 CG CD OE1 NE2 REMARK 470 MET A1092 CE REMARK 470 LEU A1093 CG CD1 CD2 REMARK 470 GLN A1095 CG CD OE1 NE2 REMARK 470 ARG A1096 CZ NH1 NH2 REMARK 470 GLU A1099 CG CD OE1 OE2 REMARK 470 LYS A1104 CG CD CE NZ REMARK 470 LYS A1107 CG CD CE NZ REMARK 470 GLU A1108 CG CD OE1 OE2 REMARK 470 GLU A1111 CG CD OE1 OE2 REMARK 470 THR A1150 OG1 CG2 REMARK 470 LYS A1151 CG CD CE NZ REMARK 470 LYS A1153 CG CD CE NZ REMARK 470 GLU A1155 CG CD OE1 OE2 REMARK 470 GLU A1156 CG CD OE1 OE2 REMARK 470 LYS A1159 CG CD CE NZ REMARK 470 LYS A1164 NZ REMARK 470 ARG A1166 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1167 CG CD OE1 OE2 REMARK 470 ASN A1169 CG OD1 ND2 REMARK 470 LYS A1172 CG CD CE NZ REMARK 470 ARG A1173 CG CD NE CZ NH1 NH2 REMARK 470 SER A1177 OG REMARK 470 GLU A1189 OE1 OE2 REMARK 470 LYS A1193 CG CD CE NZ REMARK 470 GLN A1197 CG CD OE1 NE2 REMARK 470 GLU A1200 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 801 C PRO A 802 N -0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 535 -4.33 68.10 REMARK 500 ASP A 539 -65.60 -133.24 REMARK 500 TYR A 606 -61.29 -103.07 REMARK 500 ALA A 637 -124.52 60.55 REMARK 500 GLU A 718 -64.89 -130.18 REMARK 500 SER A 794 -75.26 -120.08 REMARK 500 MET A 825 -178.90 -170.06 REMARK 500 ASN A 849 -4.39 74.44 REMARK 500 VAL A 852 -77.86 -121.36 REMARK 500 ARG A 945 -11.81 75.90 REMARK 500 VAL A 955 -66.61 -127.28 REMARK 500 ASN A1083 -7.87 69.05 REMARK 500 ASP A1101 68.76 36.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 557 OD2 REMARK 620 2 ASP A 559 OD2 121.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 1302 DBREF 5ZQF A 445 1201 UNP Q02880 TOP2B_HUMAN 450 1206 DBREF 5ZQF B 1 8 PDB 5ZQF 5ZQF 1 8 DBREF 5ZQF C 12 20 PDB 5ZQF 5ZQF 12 20 SEQADV 5ZQF MET A 419 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF ALA A 420 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF SER A 421 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF TRP A 422 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF SER A 423 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF HIS A 424 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF PRO A 425 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF GLN A 426 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF PHE A 427 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF GLU A 428 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF LYS A 429 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF GLY A 430 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF ALA A 431 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF ASP A 432 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF ASP A 433 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF ASP A 434 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF ASP A 435 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF LYS A 436 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF VAL A 437 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF PRO A 438 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF ASP A 439 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF PRO A 440 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF THR A 441 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF SER A 442 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF VAL A 443 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF ASP A 444 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF GLY A 1202 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF ALA A 1203 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF PRO A 1204 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF GLY A 1205 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF PHE A 1206 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF SER A 1207 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF SER A 1208 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF ILE A 1209 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF SER A 1210 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF ALA A 1211 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF HIS A 1212 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF HIS A 1213 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF HIS A 1214 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF HIS A 1215 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF HIS A 1216 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF HIS A 1217 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF HIS A 1218 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF HIS A 1219 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF HIS A 1220 UNP Q02880 EXPRESSION TAG SEQADV 5ZQF HIS A 1221 UNP Q02880 EXPRESSION TAG SEQRES 1 A 803 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 803 ASP ASP ASP ASP LYS VAL PRO ASP PRO THR SER VAL ASP SEQRES 3 A 803 SER VAL LYS TYR SER LYS ILE LYS GLY ILE PRO LYS LEU SEQRES 4 A 803 ASP ASP ALA ASN ASP ALA GLY GLY LYS HIS SER LEU GLU SEQRES 5 A 803 CYS THR LEU ILE LEU THR GLU GLY ASP SER ALA LYS SER SEQRES 6 A 803 LEU ALA VAL SER GLY LEU GLY VAL ILE GLY ARG ASP ARG SEQRES 7 A 803 TYR GLY VAL PHE PRO LEU ARG GLY LYS ILE LEU ASN VAL SEQRES 8 A 803 ARG GLU ALA SER HIS LYS GLN ILE MET GLU ASN ALA GLU SEQRES 9 A 803 ILE ASN ASN ILE ILE LYS ILE VAL GLY LEU GLN TYR LYS SEQRES 10 A 803 LYS SER TYR ASP ASP ALA GLU SER LEU LYS THR LEU ARG SEQRES 11 A 803 TYR GLY LYS ILE MET ILE MET THR ASP GLN ASP GLN ASP SEQRES 12 A 803 GLY SER HIS ILE LYS GLY LEU LEU ILE ASN PHE ILE HIS SEQRES 13 A 803 HIS ASN TRP PRO SER LEU LEU LYS HIS GLY PHE LEU GLU SEQRES 14 A 803 GLU PHE ILE THR PRO ILE VAL LYS ALA SER LYS ASN LYS SEQRES 15 A 803 GLN GLU LEU SER PHE TYR SER ILE PRO GLU PHE ASP GLU SEQRES 16 A 803 TRP LYS LYS HIS ILE GLU ASN GLN LYS ALA TRP LYS ILE SEQRES 17 A 803 LYS TYR TYR LYS GLY LEU GLY THR SER THR ALA LYS GLU SEQRES 18 A 803 ALA LYS GLU TYR PHE ALA ASP MET GLU ARG HIS ARG ILE SEQRES 19 A 803 LEU PHE ARG TYR ALA GLY PRO GLU ASP ASP ALA ALA ILE SEQRES 20 A 803 THR LEU ALA PHE SER LYS LYS LYS ILE ASP ASP ARG LYS SEQRES 21 A 803 GLU TRP LEU THR ASN PHE MET GLU ASP ARG ARG GLN ARG SEQRES 22 A 803 ARG LEU HIS GLY LEU PRO GLU GLN PHE LEU TYR GLY THR SEQRES 23 A 803 ALA THR LYS HIS LEU THR TYR ASN ASP PHE ILE ASN LYS SEQRES 24 A 803 GLU LEU ILE LEU PHE SER ASN SER ASP ASN GLU ARG SER SEQRES 25 A 803 ILE PRO SER LEU VAL ASP GLY PHE LYS PRO GLY GLN ARG SEQRES 26 A 803 LYS VAL LEU PHE THR CYS PHE LYS ARG ASN ASP LYS ARG SEQRES 27 A 803 GLU VAL LYS VAL ALA GLN LEU ALA GLY SER VAL ALA GLU SEQRES 28 A 803 MET SER ALA TYR HIS HIS GLY GLU GLN ALA LEU MET MET SEQRES 29 A 803 THR ILE VAL ASN LEU ALA GLN ASN PHE VAL GLY SER ASN SEQRES 30 A 803 ASN ILE ASN LEU LEU GLN PRO ILE GLY GLN PHE GLY THR SEQRES 31 A 803 ARG LEU HIS GLY GLY LYS ASP ALA ALA SER PRO ARG TYR SEQRES 32 A 803 ILE PHE THR MET LEU SER THR LEU ALA ARG LEU LEU PHE SEQRES 33 A 803 PRO ALA VAL ASP ASP ASN LEU LEU LYS PHE LEU TYR ASP SEQRES 34 A 803 ASP ASN GLN ARG VAL GLU PRO GLU TRP TYR ILE PRO ILE SEQRES 35 A 803 ILE PRO MET VAL LEU ILE ASN GLY ALA GLU GLY ILE GLY SEQRES 36 A 803 THR GLY TRP ALA CYS LYS LEU PRO ASN TYR ASP ALA ARG SEQRES 37 A 803 GLU ILE VAL ASN ASN VAL ARG ARG MET LEU ASP GLY LEU SEQRES 38 A 803 ASP PRO HIS PRO MET LEU PRO ASN TYR LYS ASN PHE LYS SEQRES 39 A 803 GLY THR ILE GLN GLU LEU GLY GLN ASN GLN TYR ALA VAL SEQRES 40 A 803 SER GLY GLU ILE PHE VAL VAL ASP ARG ASN THR VAL GLU SEQRES 41 A 803 ILE THR GLU LEU PRO VAL ARG THR TRP THR GLN VAL TYR SEQRES 42 A 803 LYS GLU GLN VAL LEU GLU PRO MET LEU ASN GLY THR ASP SEQRES 43 A 803 LYS THR PRO ALA LEU ILE SER ASP TYR LYS GLU TYR HIS SEQRES 44 A 803 THR ASP THR THR VAL LYS PHE VAL VAL LYS MET THR GLU SEQRES 45 A 803 GLU LYS LEU ALA GLN ALA GLU ALA ALA GLY LEU HIS LYS SEQRES 46 A 803 VAL PHE LYS LEU GLN THR THR LEU THR CYS ASN SER MET SEQRES 47 A 803 VAL LEU PHE ASP HIS MET GLY CYS LEU LYS LYS TYR GLU SEQRES 48 A 803 THR VAL GLN ASP ILE LEU LYS GLU PHE PHE ASP LEU ARG SEQRES 49 A 803 LEU SER TYR TYR GLY LEU ARG LYS GLU TRP LEU VAL GLY SEQRES 50 A 803 MET LEU GLY ALA GLU SER THR LYS LEU ASN ASN GLN ALA SEQRES 51 A 803 ARG PHE ILE LEU GLU LYS ILE GLN GLY LYS ILE THR ILE SEQRES 52 A 803 GLU ASN ARG SER LYS LYS ASP LEU ILE GLN MET LEU VAL SEQRES 53 A 803 GLN ARG GLY TYR GLU SER ASP PRO VAL LYS ALA TRP LYS SEQRES 54 A 803 GLU ALA GLN GLU LYS ALA ALA GLU GLU ASP GLU THR GLN SEQRES 55 A 803 ASN GLN HIS ASP ASP SER SER SER ASP SER GLY THR PRO SEQRES 56 A 803 SER GLY PRO ASP PHE ASN TYR ILE LEU ASN MET SER LEU SEQRES 57 A 803 TRP SER LEU THR LYS GLU LYS VAL GLU GLU LEU ILE LYS SEQRES 58 A 803 GLN ARG ASP ALA LYS GLY ARG GLU VAL ASN ASP LEU LYS SEQRES 59 A 803 ARG LYS SER PRO SER ASP LEU TRP LYS GLU ASP LEU ALA SEQRES 60 A 803 ALA PHE VAL GLU GLU LEU ASP LYS VAL GLU SER GLN GLU SEQRES 61 A 803 ARG GLU ASP GLY ALA PRO GLY PHE SER SER ILE SER ALA SEQRES 62 A 803 HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 8 DA DG DC DC DG DA DG DC SEQRES 1 C 9 DA DG DC IU DC DG DG DC IU HET IU C 15 21 HET IU C 20 21 HET MN A1301 1 HET MN A1302 1 HETNAM IU 5-IODOURIDINE-5'-MONOPHOSPHATE HETNAM MN MANGANESE (II) ION FORMUL 3 IU 2(C9 H12 I N2 O9 P) FORMUL 4 MN 2(MN 2+) HELIX 1 AA1 HIS A 467 GLU A 470 5 4 HELIX 2 AA2 GLY A 478 ARG A 494 1 17 HELIX 3 AA3 SER A 513 GLU A 519 1 7 HELIX 4 AA4 ASN A 520 GLY A 531 1 12 HELIX 5 AA5 ASP A 540 LYS A 545 1 6 HELIX 6 AA6 ASP A 559 TRP A 577 1 19 HELIX 7 AA7 TRP A 577 LYS A 582 1 6 HELIX 8 AA8 SER A 607 LYS A 615 1 9 HELIX 9 AA9 ALA A 637 ASP A 646 1 10 HELIX 10 AB1 ASP A 646 HIS A 650 1 5 HELIX 11 AB2 GLY A 658 SER A 670 1 13 HELIX 12 AB3 LYS A 673 GLY A 695 1 23 HELIX 13 AB4 TYR A 711 GLU A 718 1 8 HELIX 14 AB5 GLU A 718 ILE A 731 1 14 HELIX 15 AB6 LYS A 739 ASN A 753 1 15 HELIX 16 AB7 VAL A 760 ALA A 772 1 13 HELIX 17 AB8 GLY A 776 GLN A 789 1 14 HELIX 18 AB9 LEU A 829 PHE A 834 1 6 HELIX 19 AC1 ALA A 836 LEU A 842 5 7 HELIX 20 AC2 PRO A 862 ASN A 867 1 6 HELIX 21 AC3 ASP A 884 ASP A 897 1 14 HELIX 22 AC4 TRP A 947 VAL A 955 1 9 HELIX 23 AC5 VAL A 955 GLY A 962 1 8 HELIX 24 AC6 THR A 989 GLY A 1000 1 12 HELIX 25 AC7 GLY A 1000 PHE A 1005 1 6 HELIX 26 AC8 THR A 1030 GLN A 1076 1 47 HELIX 27 AC9 SER A 1085 ARG A 1096 1 12 HELIX 28 AD1 ASP A 1101 ALA A 1109 1 9 HELIX 29 AD2 PHE A 1138 ASN A 1143 1 6 HELIX 30 AD3 SER A 1145 LEU A 1149 5 5 HELIX 31 AD4 THR A 1150 ARG A 1173 1 24 HELIX 32 AD5 SER A 1175 ASP A 1201 1 27 SHEET 1 AA1 6 TYR A 497 LEU A 502 0 SHEET 2 AA1 6 THR A 472 GLU A 477 1 N ILE A 474 O PHE A 500 SHEET 3 AA1 6 LYS A 551 MET A 555 1 O MET A 555 N LEU A 475 SHEET 4 AA1 6 LEU A 586 PHE A 589 1 O GLU A 587 N ILE A 552 SHEET 5 AA1 6 ARG A 651 ARG A 655 -1 O ILE A 652 N GLU A 588 SHEET 6 AA1 6 HIS A 708 THR A 710 1 O LEU A 709 N LEU A 653 SHEET 1 AA2 2 VAL A 594 LYS A 595 0 SHEET 2 AA2 2 LYS A 627 TYR A 628 -1 O LYS A 627 N LYS A 595 SHEET 1 AA3 2 VAL A 758 LYS A 759 0 SHEET 2 AA3 2 PHE A 823 THR A 824 -1 O THR A 824 N VAL A 758 SHEET 1 AA4 2 PHE A 844 ASP A 847 0 SHEET 2 AA4 2 GLN A 850 PRO A 854 -1 O GLN A 850 N ASP A 847 SHEET 1 AA5 2 GLY A 871 ILE A 872 0 SHEET 2 AA5 2 ALA A 877 CYS A 878 -1 O CYS A 878 N GLY A 871 SHEET 1 AA6 3 THR A 914 GLY A 919 0 SHEET 2 AA6 3 GLN A 922 SER A 926 -1 O ALA A 924 N GLN A 916 SHEET 3 AA6 3 GLN A1008 THR A1012 -1 O LEU A1011 N TYR A 923 SHEET 1 AA7 4 GLU A 928 ASP A 933 0 SHEET 2 AA7 4 THR A 936 GLU A 941 -1 O GLU A 938 N PHE A 930 SHEET 3 AA7 4 PHE A 984 LYS A 987 -1 O PHE A 984 N ILE A 939 SHEET 4 AA7 4 ASP A 972 GLU A 975 -1 N ASP A 972 O LYS A 987 SHEET 1 AA8 2 VAL A1017 PHE A1019 0 SHEET 2 AA8 2 LEU A1025 LYS A1027 -1 O LYS A1026 N LEU A1018 LINK O3' DC C 14 P IU C 15 1555 1555 1.61 LINK O3' IU C 15 P DC C 16 1555 1555 1.61 LINK O3' DC C 19 P IU C 20 1555 1555 1.62 LINK OD2 ASP A 557 MN MN A1301 1555 1555 2.38 LINK OD2 ASP A 559 MN MN A1301 1555 1555 1.89 SITE 1 AC1 2 ASP A 557 ASP A 559 SITE 1 AC2 1 ASN A 867 CRYST1 94.990 94.990 231.486 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010527 0.006078 0.000000 0.00000 SCALE2 0.000000 0.012156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004320 0.00000