HEADER TRANSFERASE/TRANSFERASE INHIBITOR 19-APR-18 5ZQQ TITLE TANKYRASE-2 IN COMPLEX WITH COMPOUND 52 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TANKYRASE-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TANK2,ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 6,ARTD6, COMPND 5 POLY [ADP-RIBOSE] POLYMERASE 5B,TNKS-2,TRF1-INTERACTING ANKYRIN- COMPND 6 RELATED ADP-RIBOSE POLYMERASE 2,TANKYRASE II,TANKYRASE-LIKE PROTEIN, COMPND 7 TANKYRASE-RELATED PROTEIN; COMPND 8 EC: 2.4.2.30; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: TANKYRASE-2; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: TANK2,ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 6,ARTD6, COMPND 14 POLY [ADP-RIBOSE] POLYMERASE 5B,TNKS-2,TRF1-INTERACTING ANKYRIN- COMPND 15 RELATED ADP-RIBOSE POLYMERASE 2,TANKYRASE II,TANKYRASE-LIKE PROTEIN, COMPND 16 TANKYRASE-RELATED PROTEIN; COMPND 17 EC: 2.4.2.30; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNKS2, PARP5B, TANK2, TNKL; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 32644; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCR2.1TOPO; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: TNKS2, PARP5B, TANK2, TNKL; SOURCE 15 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 32644; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PCR2.1TOPO KEYWDS TANKYRASE, PARP, ADP-RIBOSYLATION, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.NIWA,F.SHIRAI,S.SATO,N.YOSHIMOTO,T.TSUMURA,M.OKUE,M.SHIROUZU, AUTHOR 2 H.SEIMIYA,T.UMEHARA REVDAT 3 22-NOV-23 5ZQQ 1 REMARK REVDAT 2 24-APR-19 5ZQQ 1 JRNL REVDAT 1 03-APR-19 5ZQQ 0 JRNL AUTH F.SHIRAI,T.TSUMURA,Y.YASHIRODA,H.YUKI,H.NIWA,S.SATO, JRNL AUTH 2 T.CHIKADA,Y.KODA,K.WASHIZUKA,N.YOSHIMOTO,M.ABE,T.ONUKI, JRNL AUTH 3 Y.MAZAKI,C.HIRAMA,T.FUKAMI,H.WATANABE,T.HONMA,T.UMEHARA, JRNL AUTH 4 M.SHIROUZU,M.OKUE,Y.KANO,T.WATANABE,K.KITAMURA,E.SHITARA, JRNL AUTH 5 Y.MURAMATSU,H.YOSHIDA,A.MIZUTANI,H.SEIMIYA,M.YOSHIDA, JRNL AUTH 6 H.KOYAMA JRNL TITL DISCOVERY OF NOVEL SPIROINDOLINE DERIVATIVES AS SELECTIVE JRNL TITL 2 TANKYRASE INHIBITORS. JRNL REF J. MED. CHEM. V. 62 3407 2019 JRNL REFN ISSN 1520-4804 JRNL PMID 30883102 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01888 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8411 - 4.5785 1.00 2758 127 0.1427 0.1998 REMARK 3 2 4.5785 - 3.6347 1.00 2735 143 0.1412 0.1819 REMARK 3 3 3.6347 - 3.1754 1.00 2741 115 0.1565 0.2303 REMARK 3 4 3.1754 - 2.8851 1.00 2750 128 0.1829 0.2795 REMARK 3 5 2.8851 - 2.6783 1.00 2718 162 0.1793 0.2125 REMARK 3 6 2.6783 - 2.5204 1.00 2746 144 0.1992 0.2785 REMARK 3 7 2.5204 - 2.3942 1.00 2697 155 0.2064 0.2454 REMARK 3 8 2.3942 - 2.2900 0.99 2730 153 0.2115 0.2994 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1750 REMARK 3 ANGLE : 0.829 2360 REMARK 3 CHIRALITY : 0.054 232 REMARK 3 PLANARITY : 0.004 305 REMARK 3 DIHEDRAL : 16.295 1019 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 952 THROUGH 1002 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3603 -17.0105 -21.8683 REMARK 3 T TENSOR REMARK 3 T11: 0.1981 T22: 0.3632 REMARK 3 T33: 0.2909 T12: -0.0386 REMARK 3 T13: -0.0233 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 1.1240 L22: 4.0301 REMARK 3 L33: 1.4541 L12: -0.5849 REMARK 3 L13: -0.1045 L23: -0.2034 REMARK 3 S TENSOR REMARK 3 S11: 0.0626 S12: 0.0573 S13: -0.0863 REMARK 3 S21: -0.2385 S22: -0.0183 S23: 0.3619 REMARK 3 S31: 0.0333 S32: -0.1445 S33: -0.0473 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1003 THROUGH 1018 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2143 7.7750 -18.5973 REMARK 3 T TENSOR REMARK 3 T11: 0.4514 T22: 0.2971 REMARK 3 T33: 0.4581 T12: 0.0072 REMARK 3 T13: 0.0323 T23: -0.0539 REMARK 3 L TENSOR REMARK 3 L11: 2.4385 L22: 3.7719 REMARK 3 L33: 5.2478 L12: 2.4009 REMARK 3 L13: -2.4954 L23: -0.6227 REMARK 3 S TENSOR REMARK 3 S11: 0.5731 S12: -0.4046 S13: 1.1453 REMARK 3 S21: 0.4900 S22: -0.2116 S23: 0.4950 REMARK 3 S31: -0.9439 S32: -0.0334 S33: -0.4288 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1019 THROUGH 1048 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8647 -2.8176 -15.9363 REMARK 3 T TENSOR REMARK 3 T11: 0.3234 T22: 0.4439 REMARK 3 T33: 0.2667 T12: -0.0456 REMARK 3 T13: 0.0407 T23: -0.0639 REMARK 3 L TENSOR REMARK 3 L11: 2.4128 L22: 2.4811 REMARK 3 L33: 2.0097 L12: 0.8755 REMARK 3 L13: -0.9717 L23: -1.3425 REMARK 3 S TENSOR REMARK 3 S11: 0.1047 S12: -0.5702 S13: 0.2553 REMARK 3 S21: 0.3350 S22: -0.1357 S23: 0.1566 REMARK 3 S31: -0.2567 S32: 0.2408 S33: 0.0394 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1049 THROUGH 1102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0491 -16.6494 -12.7640 REMARK 3 T TENSOR REMARK 3 T11: 0.2111 T22: 0.3342 REMARK 3 T33: 0.2192 T12: -0.0328 REMARK 3 T13: 0.0220 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.0800 L22: 3.4493 REMARK 3 L33: 1.3398 L12: -0.7630 REMARK 3 L13: 0.4346 L23: -1.5158 REMARK 3 S TENSOR REMARK 3 S11: 0.0750 S12: -0.1726 S13: -0.0942 REMARK 3 S21: 0.2022 S22: -0.0435 S23: -0.0975 REMARK 3 S31: -0.0997 S32: 0.1875 S33: -0.0305 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'A' AND (RESID 1103 THROUGH 1113 )) OR (CHAIN REMARK 3 'B' AND (RESID 1115 THROUGH 1123 )) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8476 -0.7703 -19.3334 REMARK 3 T TENSOR REMARK 3 T11: 0.3435 T22: 0.4824 REMARK 3 T33: 0.3885 T12: -0.1499 REMARK 3 T13: -0.0535 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 5.4639 L22: 2.7905 REMARK 3 L33: 5.0367 L12: -2.0994 REMARK 3 L13: 0.1201 L23: -0.8589 REMARK 3 S TENSOR REMARK 3 S11: 0.1782 S12: -0.2377 S13: 0.4562 REMARK 3 S21: 0.5391 S22: -0.3350 S23: -0.7784 REMARK 3 S31: -0.2440 S32: 0.4167 S33: 0.2984 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1124 THROUGH 1161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4213 -11.5727 -19.8856 REMARK 3 T TENSOR REMARK 3 T11: 0.2044 T22: 0.3279 REMARK 3 T33: 0.1554 T12: -0.0019 REMARK 3 T13: -0.0008 T23: -0.0460 REMARK 3 L TENSOR REMARK 3 L11: 2.2285 L22: 4.7180 REMARK 3 L33: 1.4112 L12: 0.7499 REMARK 3 L13: -0.0941 L23: -0.7936 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.0839 S13: -0.1100 REMARK 3 S21: -0.0238 S22: -0.0176 S23: -0.0512 REMARK 3 S31: -0.0621 S32: 0.1874 S33: 0.0196 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007446. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12722 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 47.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44100 REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ZQO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.5, 2.4M (NH4)2HPO4, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.34400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.35250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.35250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.67200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.35250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.35250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.01600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.35250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.35250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.67200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.35250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.35250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 89.01600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.34400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 947 REMARK 465 THR A 948 REMARK 465 SER A 949 REMARK 465 GLY A 950 REMARK 465 SER A 951 REMARK 465 LYS A 1114 REMARK 465 GLY B 1162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1047 CG CD NE CZ NH1 NH2 REMARK 470 GLU B1161 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1306 O HOH B 1318 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B1131 -70.47 -109.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1081 SG REMARK 620 2 HIS A1084 ND1 108.7 REMARK 620 3 CYS A1089 SG 110.2 99.9 REMARK 620 4 CYS A1092 SG 113.9 110.9 112.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9H6 A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1201 DBREF 5ZQQ A 947 1114 UNP Q9H2K2 TNKS2_HUMAN 947 1114 DBREF 5ZQQ B 1115 1162 UNP Q9H2K2 TNKS2_HUMAN 1115 1162 SEQRES 1 A 168 ASN THR SER GLY SER GLY THR ILE LEU ILE ASP LEU SER SEQRES 2 A 168 PRO ASP ASP LYS GLU PHE GLN SER VAL GLU GLU GLU MET SEQRES 3 A 168 GLN SER THR VAL ARG GLU HIS ARG ASP GLY GLY HIS ALA SEQRES 4 A 168 GLY GLY ILE PHE ASN ARG TYR ASN ILE LEU LYS ILE GLN SEQRES 5 A 168 LYS VAL CYS ASN LYS LYS LEU TRP GLU ARG TYR THR HIS SEQRES 6 A 168 ARG ARG LYS GLU VAL SER GLU GLU ASN HIS ASN HIS ALA SEQRES 7 A 168 ASN GLU ARG MET LEU PHE HIS GLY SER PRO PHE VAL ASN SEQRES 8 A 168 ALA ILE ILE HIS LYS GLY PHE ASP GLU ARG HIS ALA TYR SEQRES 9 A 168 ILE GLY GLY MET PHE GLY ALA GLY ILE TYR PHE ALA GLU SEQRES 10 A 168 ASN SER SER LYS SER ASN GLN TYR VAL TYR GLY ILE GLY SEQRES 11 A 168 GLY GLY THR GLY CYS PRO VAL HIS LYS ASP ARG SER CYS SEQRES 12 A 168 TYR ILE CYS HIS ARG GLN LEU LEU PHE CYS ARG VAL THR SEQRES 13 A 168 LEU GLY LYS SER PHE LEU GLN PHE SER ALA MET LYS SEQRES 1 B 48 MET ALA HIS SER PRO PRO GLY HIS HIS SER VAL THR GLY SEQRES 2 B 48 ARG PRO SER VAL ASN GLY LEU ALA LEU ALA GLU TYR VAL SEQRES 3 B 48 ILE TYR ARG GLY GLU GLN ALA TYR PRO GLU TYR LEU ILE SEQRES 4 B 48 THR TYR GLN ILE MET ARG PRO GLU GLY HET ZN A1201 1 HET 9H6 A1202 27 HET PO4 A1203 5 HET GOL B1201 6 HETNAM ZN ZINC ION HETNAM 9H6 1-METHYL-1'-(4-OXO-3,4,5,6,7,8-HEXAHYDROQUINAZOLIN-2- HETNAM 2 9H6 YL)SPIRO[INDOLE-3,4'-PIPERIDIN]-2(1H)-ONE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN ZN 2+ FORMUL 4 9H6 C21 H24 N4 O2 FORMUL 5 PO4 O4 P 3- FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *100(H2 O) HELIX 1 AA1 ASP A 962 THR A 975 1 14 HELIX 2 AA2 ASN A 1002 ASN A 1020 1 19 HELIX 3 AA3 PHE A 1035 GLY A 1043 1 9 HELIX 4 AA4 ASP A 1045 ALA A 1049 5 5 HELIX 5 AA5 ASN A 1064 GLN A 1070 1 7 HELIX 6 AA6 GLY A 1074 GLY A 1078 5 5 HELIX 7 AA7 ARG B 1143 GLU B 1145 5 3 SHEET 1 AA1 5 ILE A 954 ASP A 957 0 SHEET 2 AA1 5 TYR A 992 CYS A1001 -1 O CYS A1001 N ILE A 954 SHEET 3 AA1 5 ALA B1147 ILE B1157 -1 O GLN B1156 N ASN A 993 SHEET 4 AA1 5 ARG A1094 THR A1102 -1 N ARG A1094 O TYR B1155 SHEET 5 AA1 5 GLU A1026 HIS A1031 -1 N LEU A1029 O CYS A1099 SHEET 1 AA2 4 ILE A1059 ALA A1062 0 SHEET 2 AA2 4 GLU B1138 ILE B1141 -1 O ILE B1141 N ILE A1059 SHEET 3 AA2 4 SER B1124 PRO B1129 -1 N GLY B1127 O GLU B1138 SHEET 4 AA2 4 SER A1106 SER A1111 1 N GLN A1109 O THR B1126 LINK SG CYS A1081 ZN ZN A1201 1555 1555 2.34 LINK ND1 HIS A1084 ZN ZN A1201 1555 1555 2.10 LINK SG CYS A1089 ZN ZN A1201 1555 1555 2.27 LINK SG CYS A1092 ZN ZN A1201 1555 1555 2.30 SITE 1 AC1 4 CYS A1081 HIS A1084 CYS A1089 CYS A1092 SITE 1 AC2 12 HIS A1031 GLY A1032 PHE A1035 HIS A1048 SITE 2 AC2 12 ALA A1049 TYR A1050 TYR A1060 SER A1068 SITE 3 AC2 12 TYR A1071 ILE A1075 HOH A1355 GLU B1138 SITE 1 AC3 5 ARG A 977 HIS A 979 ARG A 980 ASP A 981 SITE 2 AC3 5 LYS A1067 SITE 1 AC4 2 TRP A1006 TYR B1148 CRYST1 66.705 66.705 118.688 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014991 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014991 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008425 0.00000