HEADER HYDROLASE 20-APR-18 5ZQS TITLE CRYSTAL STRUCTURE OF BETA-XYLOSIDASE MUTANT (E186Q/F503Y) FROM TITLE 2 BACILLUS PUMILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-XYLOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 1,4-BETA-D-XYLAN XYLOHYDROLASE,XYLAN 1,4-BETA-XYLOSIDASE; COMPND 5 EC: 3.2.1.37; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: ELECTRON MAP WAS NOT OBSERVED BETWEEN 272-274. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS PUMILUS; SOURCE 3 ORGANISM_COMMON: BACILLUS MESENTERICUS; SOURCE 4 ORGANISM_TAXID: 1408; SOURCE 5 GENE: XYNB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS XYLOBIOSE HYDROLYSIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.C.HA,S.HONG,I.JO REVDAT 4 22-NOV-23 5ZQS 1 HETSYN REVDAT 3 29-JUL-20 5ZQS 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 HETSYN FORMUL LINK SITE REVDAT 3 3 1 ATOM REVDAT 2 06-JUN-18 5ZQS 1 JRNL REVDAT 1 30-MAY-18 5ZQS 0 JRNL AUTH S.HONG,M.KYUNG,I.JO,Y.R.KIM,N.C.HA JRNL TITL STRUCTURE-BASED PROTEIN ENGINEERING OF BACTERIAL JRNL TITL 2 BETA-XYLOSIDASE TO INCREASE THE PRODUCTION YIELD OF JRNL TITL 3 XYLOBIOSE FROM XYLOSE JRNL REF BIOCHEM. BIOPHYS. RES. V. 501 703 2018 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 29752942 JRNL DOI 10.1016/J.BBRC.2018.05.051 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1-2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.530 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.8 REMARK 3 NUMBER OF REFLECTIONS : 83428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 4243 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6404 - 5.5318 0.99 3210 154 0.1585 0.1862 REMARK 3 2 5.5318 - 4.3933 0.99 3189 153 0.1369 0.1559 REMARK 3 3 4.3933 - 3.8387 1.00 3163 169 0.1368 0.1733 REMARK 3 4 3.8387 - 3.4881 1.00 3154 169 0.1481 0.2057 REMARK 3 5 3.4881 - 3.2382 0.99 3089 203 0.1651 0.2021 REMARK 3 6 3.2382 - 3.0474 0.99 3160 167 0.1706 0.2157 REMARK 3 7 3.0474 - 2.8949 0.99 3071 187 0.1672 0.2114 REMARK 3 8 2.8949 - 2.7689 0.99 3125 171 0.1814 0.2352 REMARK 3 9 2.7689 - 2.6624 0.98 3098 165 0.1797 0.2106 REMARK 3 10 2.6624 - 2.5705 0.98 3111 170 0.1822 0.2141 REMARK 3 11 2.5705 - 2.4902 0.98 3051 179 0.1800 0.2459 REMARK 3 12 2.4902 - 2.4190 0.97 3074 166 0.1718 0.2275 REMARK 3 13 2.4190 - 2.3553 0.97 3044 157 0.1786 0.2324 REMARK 3 14 2.3553 - 2.2979 0.96 2990 168 0.1790 0.2144 REMARK 3 15 2.2979 - 2.2456 0.95 3042 152 0.1757 0.2469 REMARK 3 16 2.2456 - 2.1979 0.95 2964 148 0.1807 0.2180 REMARK 3 17 2.1979 - 2.1539 0.93 2956 140 0.1732 0.1965 REMARK 3 18 2.1539 - 2.1133 0.92 2885 129 0.1739 0.2624 REMARK 3 19 2.1133 - 2.0755 0.88 2782 155 0.1798 0.2349 REMARK 3 20 2.0755 - 2.0404 0.85 2648 142 0.1764 0.2254 REMARK 3 21 2.0404 - 2.0074 0.80 2477 146 0.1864 0.2580 REMARK 3 22 2.0074 - 1.9766 0.73 2341 109 0.1864 0.2305 REMARK 3 23 1.9766 - 1.9475 0.70 2164 112 0.1819 0.2028 REMARK 3 24 1.9475 - 1.9201 0.66 2054 119 0.1902 0.2944 REMARK 3 25 1.9201 - 1.8941 0.60 1887 111 0.1845 0.2087 REMARK 3 26 1.8941 - 1.8695 0.57 1791 86 0.1800 0.2326 REMARK 3 27 1.8695 - 1.8462 0.51 1585 93 0.1829 0.2325 REMARK 3 28 1.8462 - 1.8239 0.49 1537 78 0.1802 0.2314 REMARK 3 29 1.8239 - 1.8027 0.45 1387 94 0.1810 0.2088 REMARK 3 30 1.8027 - 1.7824 0.37 1156 51 0.1673 0.2464 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 8937 REMARK 3 ANGLE : 0.916 12162 REMARK 3 CHIRALITY : 0.059 1277 REMARK 3 PLANARITY : 0.007 1563 REMARK 3 DIHEDRAL : 4.116 5177 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95015 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5ZQJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M HEPES (PH 7.5), 20% (W/V) PEG REMARK 280 3350, 1% (W/V) TRYPTONE, AND 30 MM XYLOBIOSE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.51050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.71850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.51050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 51.71850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 534 REMARK 465 GLU A 535 REMARK 465 HIS A 536 REMARK 465 HIS A 537 REMARK 465 HIS A 538 REMARK 465 HIS A 539 REMARK 465 HIS A 540 REMARK 465 HIS A 541 REMARK 465 SER B 272 REMARK 465 LYS B 273 REMARK 465 GLU B 274 REMARK 465 THR B 534 REMARK 465 GLU B 535 REMARK 465 HIS B 536 REMARK 465 HIS B 537 REMARK 465 HIS B 538 REMARK 465 HIS B 539 REMARK 465 HIS B 540 REMARK 465 HIS B 541 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 854 O HOH B 940 2.04 REMARK 500 O HOH A 830 O HOH B 839 2.08 REMARK 500 O HOH B 884 O HOH B 885 2.12 REMARK 500 NZ LYS A 273 O HOH A 701 2.17 REMARK 500 O HOH B 832 O HOH B 951 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 382 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 11 97.83 -60.67 REMARK 500 ASN A 12 68.08 -152.57 REMARK 500 PHE A 31 -123.10 57.28 REMARK 500 VAL A 37 131.56 66.09 REMARK 500 LEU A 45 -6.37 72.99 REMARK 500 TRP A 73 -155.02 -84.48 REMARK 500 LEU A 121 -74.16 -105.39 REMARK 500 LYS A 183 -165.71 62.15 REMARK 500 ARG A 207 -142.36 -97.44 REMARK 500 ARG A 346 -42.14 73.64 REMARK 500 GLN A 368 -135.41 -129.49 REMARK 500 PHE A 375 -88.79 -119.70 REMARK 500 ARG A 467 -100.36 56.57 REMARK 500 GLN A 478 -0.66 67.35 REMARK 500 LEU A 493 51.91 -102.25 REMARK 500 TYR A 503 53.53 -141.79 REMARK 500 THR A 505 -113.34 -107.32 REMARK 500 PHE B 11 97.09 -51.39 REMARK 500 ASN B 12 68.38 -154.94 REMARK 500 PHE B 31 -122.39 58.20 REMARK 500 VAL B 37 135.26 64.78 REMARK 500 ASP B 44 -3.77 -140.01 REMARK 500 LEU B 45 -5.96 73.65 REMARK 500 TRP B 73 -148.06 -83.30 REMARK 500 LYS B 99 58.52 -142.30 REMARK 500 LEU B 121 -74.63 -101.42 REMARK 500 LYS B 183 -165.74 60.67 REMARK 500 GLN B 186 -164.53 -161.03 REMARK 500 ARG B 207 -149.64 -92.50 REMARK 500 THR B 234 147.85 -177.01 REMARK 500 ARG B 346 -38.45 71.91 REMARK 500 GLN B 368 -136.25 -129.37 REMARK 500 PHE B 375 -87.75 -117.58 REMARK 500 ARG B 467 -102.94 56.32 REMARK 500 GLN B 478 -0.70 79.16 REMARK 500 LEU B 493 52.94 -102.46 REMARK 500 TYR B 503 52.77 -141.18 REMARK 500 THR B 505 -134.73 -109.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE METABOLISM REMARK 630 MOLECULE NAME: BETA-D-XYLOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 XYP A 602 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ZQJ RELATED DB: PDB REMARK 900 WILD TYPE STRUCTURE DBREF 5ZQS A 1 535 UNP P07129 XYNB_BACPU 1 535 DBREF 5ZQS B 1 535 UNP P07129 XYNB_BACPU 1 535 SEQADV 5ZQS GLN A 186 UNP P07129 GLU 186 ENGINEERED MUTATION SEQADV 5ZQS TYR A 503 UNP P07129 PHE 503 ENGINEERED MUTATION SEQADV 5ZQS HIS A 536 UNP P07129 EXPRESSION TAG SEQADV 5ZQS HIS A 537 UNP P07129 EXPRESSION TAG SEQADV 5ZQS HIS A 538 UNP P07129 EXPRESSION TAG SEQADV 5ZQS HIS A 539 UNP P07129 EXPRESSION TAG SEQADV 5ZQS HIS A 540 UNP P07129 EXPRESSION TAG SEQADV 5ZQS HIS A 541 UNP P07129 EXPRESSION TAG SEQADV 5ZQS GLN B 186 UNP P07129 GLU 186 ENGINEERED MUTATION SEQADV 5ZQS TYR B 503 UNP P07129 PHE 503 ENGINEERED MUTATION SEQADV 5ZQS HIS B 536 UNP P07129 EXPRESSION TAG SEQADV 5ZQS HIS B 537 UNP P07129 EXPRESSION TAG SEQADV 5ZQS HIS B 538 UNP P07129 EXPRESSION TAG SEQADV 5ZQS HIS B 539 UNP P07129 EXPRESSION TAG SEQADV 5ZQS HIS B 540 UNP P07129 EXPRESSION TAG SEQADV 5ZQS HIS B 541 UNP P07129 EXPRESSION TAG SEQRES 1 A 541 MET LYS ILE THR ASN PRO VAL LEU LYS GLY PHE ASN PRO SEQRES 2 A 541 ASP PRO SER ILE CYS ARG ALA GLY GLU ASP TYR TYR MET SEQRES 3 A 541 ALA VAL SER THR PHE GLU TRP PHE PRO GLY VAL GLN ILE SEQRES 4 A 541 TYR HIS SER LYS ASP LEU ILE HIS TRP ARG LEU ALA ALA SEQRES 5 A 541 ARG PRO LEU GLN LYS THR SER GLN LEU ASP MET LYS GLY SEQRES 6 A 541 ASN PRO ASP SER GLY GLY VAL TRP ALA PRO CYS LEU SER SEQRES 7 A 541 TYR ALA ASP GLY GLN PHE TRP LEU ILE TYR SER ASP ILE SEQRES 8 A 541 LYS VAL VAL ASP GLY PRO PHE LYS ASP GLY HIS ASN TYR SEQRES 9 A 541 LEU VAL THR ALA ASP ALA VAL ASP GLY GLU TRP SER ASP SEQRES 10 A 541 PRO VAL ARG LEU ASN SER SER GLY PHE ASP PRO SER LEU SEQRES 11 A 541 PHE HIS ASP PRO SER GLY LYS LYS TYR VAL LEU ASN MET SEQRES 12 A 541 LEU TRP ASP HIS ARG GLU LYS HIS HIS SER PHE ALA GLY SEQRES 13 A 541 ILE ALA LEU GLN GLU TYR SER VAL SER GLU LYS LYS LEU SEQRES 14 A 541 VAL GLY GLU ARG LYS VAL ILE PHE LYS GLY THR PRO ILE SEQRES 15 A 541 LYS LEU THR GLN ALA PRO HIS LEU TYR TYR ILE ASN ASP SEQRES 16 A 541 VAL TYR TYR LEU LEU THR ALA GLU GLY GLY THR ARG TYR SEQRES 17 A 541 GLU HIS ALA ALA THR ILE ALA ARG SER SER ARG ILE ASP SEQRES 18 A 541 GLY PRO TYR GLU VAL HIS PRO ASP ASN PRO ILE LEU THR SEQRES 19 A 541 ALA PHE HIS ALA PRO SER HIS PRO LEU GLN LYS CYS GLY SEQRES 20 A 541 HIS ALA SER ILE VAL GLN THR HIS THR ASN GLU TRP TYR SEQRES 21 A 541 LEU ALA HIS LEU THR GLY ARG PRO ILE HIS SER SER LYS SEQRES 22 A 541 GLU SER ILE PHE GLN GLN ARG GLY TRP CYS PRO LEU GLY SEQRES 23 A 541 ARG GLU THR ALA ILE GLN LYS LEU GLU TRP LYS ASP GLY SEQRES 24 A 541 TRP PRO TYR VAL VAL GLY GLY LYS GLU GLY LEU LEU GLU SEQRES 25 A 541 VAL GLU ALA PRO ALA MET SER VAL LYS GLU PHE SER PRO SEQRES 26 A 541 THR TYR HIS ILE VAL ASP GLU PHE LYS ASP SER SER LEU SEQRES 27 A 541 ASN ARG HIS PHE GLN THR LEU ARG ILE PRO PHE THR ASP SEQRES 28 A 541 GLN ILE GLY SER VAL THR GLU ASN PRO HIS HIS LEU ARG SEQRES 29 A 541 LEU TYR GLY GLN GLU SER LEU THR SER LYS PHE THR GLN SEQRES 30 A 541 ALA PHE VAL ALA ARG ARG TRP GLN SER PHE TYR PHE GLU SEQRES 31 A 541 ALA GLU THR ALA VAL SER PHE PHE PRO LYS ASN PHE GLN SEQRES 32 A 541 GLN ALA ALA GLY LEU VAL ASN TYR TYR ASN THR GLU ASN SEQRES 33 A 541 TRP THR ALA LEU GLN VAL THR TYR ASP ASP ALA LEU GLY SEQRES 34 A 541 ARG ILE LEU GLU LEU SER VAL CYS GLU ASN LEU ALA PHE SEQRES 35 A 541 SER GLN PRO LEU ILE LYS LYS ILE ILE ILE PRO ASP GLU SEQRES 36 A 541 ILE PRO TYR VAL TYR LEU LYS VAL THR VAL GLN ARG GLU SEQRES 37 A 541 THR TYR THR TYR SER TYR SER PHE ASP GLN GLN GLU TRP SEQRES 38 A 541 GLU LYS ILE ASP VAL PRO LEU GLU SER THR HIS LEU SER SEQRES 39 A 541 ASP ASP PHE ILE ARG GLY GLY GLY TYR PHE THR GLY ALA SEQRES 40 A 541 PHE VAL GLY MET GLN CYS GLN ASP THR SER GLY GLU ARG SEQRES 41 A 541 LEU PRO ALA ASP PHE LYS TYR PHE ARG TYR GLU GLU THR SEQRES 42 A 541 THR GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 541 MET LYS ILE THR ASN PRO VAL LEU LYS GLY PHE ASN PRO SEQRES 2 B 541 ASP PRO SER ILE CYS ARG ALA GLY GLU ASP TYR TYR MET SEQRES 3 B 541 ALA VAL SER THR PHE GLU TRP PHE PRO GLY VAL GLN ILE SEQRES 4 B 541 TYR HIS SER LYS ASP LEU ILE HIS TRP ARG LEU ALA ALA SEQRES 5 B 541 ARG PRO LEU GLN LYS THR SER GLN LEU ASP MET LYS GLY SEQRES 6 B 541 ASN PRO ASP SER GLY GLY VAL TRP ALA PRO CYS LEU SER SEQRES 7 B 541 TYR ALA ASP GLY GLN PHE TRP LEU ILE TYR SER ASP ILE SEQRES 8 B 541 LYS VAL VAL ASP GLY PRO PHE LYS ASP GLY HIS ASN TYR SEQRES 9 B 541 LEU VAL THR ALA ASP ALA VAL ASP GLY GLU TRP SER ASP SEQRES 10 B 541 PRO VAL ARG LEU ASN SER SER GLY PHE ASP PRO SER LEU SEQRES 11 B 541 PHE HIS ASP PRO SER GLY LYS LYS TYR VAL LEU ASN MET SEQRES 12 B 541 LEU TRP ASP HIS ARG GLU LYS HIS HIS SER PHE ALA GLY SEQRES 13 B 541 ILE ALA LEU GLN GLU TYR SER VAL SER GLU LYS LYS LEU SEQRES 14 B 541 VAL GLY GLU ARG LYS VAL ILE PHE LYS GLY THR PRO ILE SEQRES 15 B 541 LYS LEU THR GLN ALA PRO HIS LEU TYR TYR ILE ASN ASP SEQRES 16 B 541 VAL TYR TYR LEU LEU THR ALA GLU GLY GLY THR ARG TYR SEQRES 17 B 541 GLU HIS ALA ALA THR ILE ALA ARG SER SER ARG ILE ASP SEQRES 18 B 541 GLY PRO TYR GLU VAL HIS PRO ASP ASN PRO ILE LEU THR SEQRES 19 B 541 ALA PHE HIS ALA PRO SER HIS PRO LEU GLN LYS CYS GLY SEQRES 20 B 541 HIS ALA SER ILE VAL GLN THR HIS THR ASN GLU TRP TYR SEQRES 21 B 541 LEU ALA HIS LEU THR GLY ARG PRO ILE HIS SER SER LYS SEQRES 22 B 541 GLU SER ILE PHE GLN GLN ARG GLY TRP CYS PRO LEU GLY SEQRES 23 B 541 ARG GLU THR ALA ILE GLN LYS LEU GLU TRP LYS ASP GLY SEQRES 24 B 541 TRP PRO TYR VAL VAL GLY GLY LYS GLU GLY LEU LEU GLU SEQRES 25 B 541 VAL GLU ALA PRO ALA MET SER VAL LYS GLU PHE SER PRO SEQRES 26 B 541 THR TYR HIS ILE VAL ASP GLU PHE LYS ASP SER SER LEU SEQRES 27 B 541 ASN ARG HIS PHE GLN THR LEU ARG ILE PRO PHE THR ASP SEQRES 28 B 541 GLN ILE GLY SER VAL THR GLU ASN PRO HIS HIS LEU ARG SEQRES 29 B 541 LEU TYR GLY GLN GLU SER LEU THR SER LYS PHE THR GLN SEQRES 30 B 541 ALA PHE VAL ALA ARG ARG TRP GLN SER PHE TYR PHE GLU SEQRES 31 B 541 ALA GLU THR ALA VAL SER PHE PHE PRO LYS ASN PHE GLN SEQRES 32 B 541 GLN ALA ALA GLY LEU VAL ASN TYR TYR ASN THR GLU ASN SEQRES 33 B 541 TRP THR ALA LEU GLN VAL THR TYR ASP ASP ALA LEU GLY SEQRES 34 B 541 ARG ILE LEU GLU LEU SER VAL CYS GLU ASN LEU ALA PHE SEQRES 35 B 541 SER GLN PRO LEU ILE LYS LYS ILE ILE ILE PRO ASP GLU SEQRES 36 B 541 ILE PRO TYR VAL TYR LEU LYS VAL THR VAL GLN ARG GLU SEQRES 37 B 541 THR TYR THR TYR SER TYR SER PHE ASP GLN GLN GLU TRP SEQRES 38 B 541 GLU LYS ILE ASP VAL PRO LEU GLU SER THR HIS LEU SER SEQRES 39 B 541 ASP ASP PHE ILE ARG GLY GLY GLY TYR PHE THR GLY ALA SEQRES 40 B 541 PHE VAL GLY MET GLN CYS GLN ASP THR SER GLY GLU ARG SEQRES 41 B 541 LEU PRO ALA ASP PHE LYS TYR PHE ARG TYR GLU GLU THR SEQRES 42 B 541 THR GLU HIS HIS HIS HIS HIS HIS HET XYP C 1 10 HET XYP C 2 9 HET XYP D 1 10 HET XYP D 2 9 HET XYP A 602 10 HETNAM XYP BETA-D-XYLOPYRANOSE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE FORMUL 3 XYP 5(C5 H10 O5) FORMUL 6 HOH *555(H2 O) HELIX 1 AA1 THR A 491 SER A 494 5 4 HELIX 2 AA2 THR B 491 SER B 494 5 4 SHEET 1 AA1 2 LYS A 2 THR A 4 0 SHEET 2 AA1 2 GLU A 312 GLU A 314 -1 O VAL A 313 N ILE A 3 SHEET 1 AA2 4 SER A 16 ALA A 20 0 SHEET 2 AA2 4 ASP A 23 VAL A 28 -1 O ASP A 23 N ALA A 20 SHEET 3 AA2 4 GLN A 38 SER A 42 -1 O TYR A 40 N MET A 26 SHEET 4 AA2 4 ARG A 49 ALA A 52 -1 O ALA A 52 N ILE A 39 SHEET 1 AA3 2 TRP A 33 PHE A 34 0 SHEET 2 AA3 2 THR A 344 LEU A 345 -1 O THR A 344 N PHE A 34 SHEET 1 AA4 4 CYS A 76 ALA A 80 0 SHEET 2 AA4 4 GLN A 83 ILE A 91 -1 O TRP A 85 N SER A 78 SHEET 3 AA4 4 GLY A 101 ALA A 108 -1 O ALA A 108 N PHE A 84 SHEET 4 AA4 4 VAL A 119 ARG A 120 -1 O VAL A 119 N LEU A 105 SHEET 1 AA5 4 SER A 129 HIS A 132 0 SHEET 2 AA5 4 LYS A 138 TRP A 145 -1 O TYR A 139 N PHE A 131 SHEET 3 AA5 4 PHE A 154 SER A 163 -1 O GLN A 160 N VAL A 140 SHEET 4 AA5 4 LYS A 168 PHE A 177 -1 O PHE A 177 N ILE A 157 SHEET 1 AA6 4 GLN A 186 ILE A 193 0 SHEET 2 AA6 4 VAL A 196 GLU A 203 -1 O TYR A 198 N TYR A 191 SHEET 3 AA6 4 ALA A 211 SER A 217 -1 O SER A 217 N TYR A 197 SHEET 4 AA6 4 GLU A 225 VAL A 226 -1 O GLU A 225 N ARG A 216 SHEET 1 AA7 4 GLN A 186 ILE A 193 0 SHEET 2 AA7 4 VAL A 196 GLU A 203 -1 O TYR A 198 N TYR A 191 SHEET 3 AA7 4 ALA A 211 SER A 217 -1 O SER A 217 N TYR A 197 SHEET 4 AA7 4 LEU A 233 THR A 234 -1 O LEU A 233 N ALA A 212 SHEET 1 AA8 4 GLN A 244 GLN A 253 0 SHEET 2 AA8 4 TRP A 259 GLY A 266 -1 O ALA A 262 N SER A 250 SHEET 3 AA8 4 GLU A 288 LYS A 297 -1 O GLN A 292 N LEU A 261 SHEET 4 AA8 4 TRP A 300 VAL A 303 -1 O TRP A 300 N LYS A 297 SHEET 1 AA9 6 VAL A 330 ASP A 331 0 SHEET 2 AA9 6 PRO A 522 GLU A 532 -1 O PHE A 528 N ASP A 331 SHEET 3 AA9 6 TYR A 388 SER A 396 -1 N GLU A 392 O ARG A 529 SHEET 4 AA9 6 VAL A 459 GLN A 466 -1 O LEU A 461 N THR A 393 SHEET 5 AA9 6 THR A 469 SER A 475 -1 O THR A 469 N GLN A 466 SHEET 6 AA9 6 GLU A 482 LYS A 483 -1 O GLU A 482 N TYR A 474 SHEET 1 AB1 7 GLY A 354 SER A 355 0 SHEET 2 AB1 7 LEU A 363 TYR A 366 -1 O ARG A 364 N SER A 355 SHEET 3 AB1 7 PRO A 522 GLU A 532 -1 O PHE A 525 N LEU A 363 SHEET 4 AB1 7 TYR A 388 SER A 396 -1 N GLU A 392 O ARG A 529 SHEET 5 AB1 7 VAL A 459 GLN A 466 -1 O LEU A 461 N THR A 393 SHEET 6 AB1 7 THR A 469 SER A 475 -1 O THR A 469 N GLN A 466 SHEET 7 AB1 7 LEU A 488 GLU A 489 -1 O LEU A 488 N TYR A 470 SHEET 1 AB2 6 ALA A 378 ARG A 383 0 SHEET 2 AB2 6 PHE A 508 ASP A 515 -1 O VAL A 509 N ARG A 382 SHEET 3 AB2 6 GLN A 404 ASN A 413 -1 N ALA A 405 O GLN A 514 SHEET 4 AB2 6 ASN A 416 ASP A 425 -1 O VAL A 422 N ALA A 406 SHEET 5 AB2 6 GLY A 429 GLU A 438 -1 O ILE A 431 N THR A 423 SHEET 6 AB2 6 ALA A 441 SER A 443 -1 O SER A 443 N VAL A 436 SHEET 1 AB3 6 ALA A 378 ARG A 383 0 SHEET 2 AB3 6 PHE A 508 ASP A 515 -1 O VAL A 509 N ARG A 382 SHEET 3 AB3 6 GLN A 404 ASN A 413 -1 N ALA A 405 O GLN A 514 SHEET 4 AB3 6 ASN A 416 ASP A 425 -1 O VAL A 422 N ALA A 406 SHEET 5 AB3 6 GLY A 429 GLU A 438 -1 O ILE A 431 N THR A 423 SHEET 6 AB3 6 ILE A 450 ILE A 451 -1 O ILE A 450 N LEU A 432 SHEET 1 AB4 2 LYS B 2 THR B 4 0 SHEET 2 AB4 2 GLU B 312 GLU B 314 -1 O VAL B 313 N ILE B 3 SHEET 1 AB5 4 SER B 16 ALA B 20 0 SHEET 2 AB5 4 ASP B 23 VAL B 28 -1 O ASP B 23 N ALA B 20 SHEET 3 AB5 4 GLN B 38 SER B 42 -1 O TYR B 40 N MET B 26 SHEET 4 AB5 4 ARG B 49 ALA B 52 -1 O ALA B 52 N ILE B 39 SHEET 1 AB6 2 TRP B 33 PHE B 34 0 SHEET 2 AB6 2 THR B 344 LEU B 345 -1 O THR B 344 N PHE B 34 SHEET 1 AB7 4 CYS B 76 ALA B 80 0 SHEET 2 AB7 4 GLN B 83 ILE B 91 -1 O TRP B 85 N SER B 78 SHEET 3 AB7 4 GLY B 101 ALA B 108 -1 O ALA B 108 N PHE B 84 SHEET 4 AB7 4 VAL B 119 ARG B 120 -1 O VAL B 119 N LEU B 105 SHEET 1 AB8 4 SER B 129 HIS B 132 0 SHEET 2 AB8 4 LYS B 138 TRP B 145 -1 O TYR B 139 N PHE B 131 SHEET 3 AB8 4 PHE B 154 SER B 163 -1 O TYR B 162 N LYS B 138 SHEET 4 AB8 4 LYS B 168 PHE B 177 -1 O LYS B 168 N SER B 163 SHEET 1 AB9 4 GLN B 186 ILE B 193 0 SHEET 2 AB9 4 VAL B 196 GLU B 203 -1 O TYR B 198 N TYR B 191 SHEET 3 AB9 4 ALA B 211 SER B 217 -1 O SER B 217 N TYR B 197 SHEET 4 AB9 4 GLU B 225 VAL B 226 -1 O GLU B 225 N ARG B 216 SHEET 1 AC1 4 GLN B 186 ILE B 193 0 SHEET 2 AC1 4 VAL B 196 GLU B 203 -1 O TYR B 198 N TYR B 191 SHEET 3 AC1 4 ALA B 211 SER B 217 -1 O SER B 217 N TYR B 197 SHEET 4 AC1 4 LEU B 233 THR B 234 -1 O LEU B 233 N ALA B 212 SHEET 1 AC2 4 GLN B 244 GLN B 253 0 SHEET 2 AC2 4 TRP B 259 GLY B 266 -1 O ALA B 262 N SER B 250 SHEET 3 AC2 4 GLU B 288 LYS B 297 -1 O GLU B 288 N THR B 265 SHEET 4 AC2 4 TRP B 300 VAL B 303 -1 O TRP B 300 N LYS B 297 SHEET 1 AC3 6 VAL B 330 ASP B 331 0 SHEET 2 AC3 6 PRO B 522 GLU B 532 -1 O PHE B 528 N ASP B 331 SHEET 3 AC3 6 TYR B 388 SER B 396 -1 N GLU B 392 O ARG B 529 SHEET 4 AC3 6 VAL B 459 GLN B 466 -1 O LEU B 461 N THR B 393 SHEET 5 AC3 6 THR B 469 SER B 475 -1 O THR B 469 N GLN B 466 SHEET 6 AC3 6 GLU B 482 LYS B 483 -1 O GLU B 482 N TYR B 474 SHEET 1 AC4 7 GLY B 354 SER B 355 0 SHEET 2 AC4 7 LEU B 363 TYR B 366 -1 O ARG B 364 N SER B 355 SHEET 3 AC4 7 PRO B 522 GLU B 532 -1 O PHE B 525 N LEU B 363 SHEET 4 AC4 7 TYR B 388 SER B 396 -1 N GLU B 392 O ARG B 529 SHEET 5 AC4 7 VAL B 459 GLN B 466 -1 O LEU B 461 N THR B 393 SHEET 6 AC4 7 THR B 469 SER B 475 -1 O THR B 469 N GLN B 466 SHEET 7 AC4 7 LEU B 488 GLU B 489 -1 O LEU B 488 N TYR B 470 SHEET 1 AC5 6 ALA B 378 ARG B 383 0 SHEET 2 AC5 6 PHE B 508 ASP B 515 -1 O VAL B 509 N ARG B 382 SHEET 3 AC5 6 GLN B 404 ASN B 413 -1 N ALA B 405 O GLN B 514 SHEET 4 AC5 6 ASN B 416 ASP B 425 -1 O LEU B 420 N LEU B 408 SHEET 5 AC5 6 GLY B 429 GLU B 438 -1 O GLY B 429 N ASP B 425 SHEET 6 AC5 6 ALA B 441 SER B 443 -1 O SER B 443 N VAL B 436 SHEET 1 AC6 6 ALA B 378 ARG B 383 0 SHEET 2 AC6 6 PHE B 508 ASP B 515 -1 O VAL B 509 N ARG B 382 SHEET 3 AC6 6 GLN B 404 ASN B 413 -1 N ALA B 405 O GLN B 514 SHEET 4 AC6 6 ASN B 416 ASP B 425 -1 O LEU B 420 N LEU B 408 SHEET 5 AC6 6 GLY B 429 GLU B 438 -1 O GLY B 429 N ASP B 425 SHEET 6 AC6 6 ILE B 450 ILE B 451 -1 O ILE B 450 N LEU B 432 LINK O4 XYP C 1 C1 XYP C 2 1555 1555 1.31 LINK O4 XYP D 1 C1 XYP D 2 1555 1555 1.30 CISPEP 1 ASN A 5 PRO A 6 0 -5.51 CISPEP 2 PHE A 34 PRO A 35 0 -2.19 CISPEP 3 GLY A 222 PRO A 223 0 2.60 CISPEP 4 ASN A 230 PRO A 231 0 -4.70 CISPEP 5 ASN B 5 PRO B 6 0 -4.31 CISPEP 6 PHE B 34 PRO B 35 0 -1.68 CISPEP 7 GLY B 222 PRO B 223 0 1.28 CISPEP 8 ASN B 230 PRO B 231 0 -3.49 CRYST1 117.021 103.437 104.813 90.00 123.08 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008545 0.000000 0.005566 0.00000 SCALE2 0.000000 0.009668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011386 0.00000