HEADER TRANSCRIPTION 20-APR-18 5ZQU TITLE CRYSTAL STRUCTURE OF TETRAMERIC RXRALPHA-LBD COMPLEXED WITH PARTIAL TITLE 2 AGONIST CBT-PMN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RXR-ALPHA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 2 GROUP B MEMBER 1,RETINOID X COMPND 5 RECEPTOR ALPHA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RXRA, NR2B1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS EXTENDED FORM, MULTIPLE CONFORMATION, NUCLEAR RECEPTOR, RETINOID X KEYWDS 2 RECEPTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.MIYASHITA,N.NUMOTO,S.ARULMOZHIRAJA,S.NAKANO,N.MATSUO,K.SHIMIZU, AUTHOR 2 H.KAKUTA,S.ITO,T.IKURA,N.ITO,H.TOKIWA REVDAT 2 22-NOV-23 5ZQU 1 REMARK REVDAT 1 27-FEB-19 5ZQU 0 JRNL AUTH Y.MIYASHITA,N.NUMOTO,S.ARULMOZHIRAJA,S.NAKANO,N.MATSUO, JRNL AUTH 2 K.SHIMIZU,O.SHIBAHARA,M.FUJIHARA,H.KAKUTA,S.ITO,T.IKURA, JRNL AUTH 3 N.ITO,H.TOKIWA JRNL TITL DUAL CONFORMATION OF THE LIGAND INDUCES THE PARTIAL JRNL TITL 2 AGONISTIC ACTIVITY OF RETINOID X RECEPTOR ALPHA (RXR ALPHA JRNL TITL 3 ). JRNL REF FEBS LETT. V. 593 242 2019 JRNL REFN ISSN 1873-3468 JRNL PMID 30565665 JRNL DOI 10.1002/1873-3468.13301 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.343 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 30972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.124 REMARK 3 FREE R VALUE TEST SET COUNT : 1587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5238 - 5.7763 0.99 2693 160 0.1782 0.2171 REMARK 3 2 5.7763 - 4.5877 1.00 2697 140 0.1992 0.2506 REMARK 3 3 4.5877 - 4.0086 1.00 2712 130 0.1913 0.2191 REMARK 3 4 4.0086 - 3.6424 1.00 2678 140 0.2148 0.2609 REMARK 3 5 3.6424 - 3.3816 1.00 2663 152 0.2399 0.3175 REMARK 3 6 3.3816 - 3.1823 1.00 2693 125 0.2575 0.3222 REMARK 3 7 3.1823 - 3.0230 1.00 2675 145 0.2708 0.3325 REMARK 3 8 3.0230 - 2.8915 1.00 2643 161 0.2654 0.3207 REMARK 3 9 2.8915 - 2.7802 1.00 2654 146 0.2832 0.3010 REMARK 3 10 2.7802 - 2.6843 1.00 2685 153 0.2940 0.3562 REMARK 3 11 2.6843 - 2.6004 0.97 2592 135 0.3265 0.3419 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.398 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.073 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6549 REMARK 3 ANGLE : 0.791 8899 REMARK 3 CHIRALITY : 0.025 997 REMARK 3 PLANARITY : 0.004 1114 REMARK 3 DIHEDRAL : 13.052 2543 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MULTIPOLE WIGGLER REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31000 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.79800 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4N8R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM SODIUM BROMIDE, 20% POLYETHYLENE REMARK 280 GLYCOL 3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.24600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 220 REMARK 465 SER A 221 REMARK 465 SER A 222 REMARK 465 HIS A 223 REMARK 465 SER A 224 REMARK 465 SER A 225 REMARK 465 ALA A 226 REMARK 465 ASN A 227 REMARK 465 GLU A 228 REMARK 465 ASP A 229 REMARK 465 MET A 230 REMARK 465 PRO A 231 REMARK 465 VAL A 232 REMARK 465 GLU A 233 REMARK 465 ARG A 234 REMARK 465 ILE A 235 REMARK 465 LEU A 236 REMARK 465 GLU A 237 REMARK 465 ALA A 238 REMARK 465 GLU A 239 REMARK 465 LEU A 240 REMARK 465 ALA A 241 REMARK 465 VAL A 242 REMARK 465 GLU A 243 REMARK 465 PRO A 244 REMARK 465 LYS A 245 REMARK 465 THR A 246 REMARK 465 GLU A 247 REMARK 465 THR A 248 REMARK 465 TYR A 249 REMARK 465 VAL A 250 REMARK 465 GLU A 251 REMARK 465 ALA A 252 REMARK 465 ASN A 253 REMARK 465 MET A 254 REMARK 465 GLY A 255 REMARK 465 LEU A 256 REMARK 465 ASN A 257 REMARK 465 PRO A 258 REMARK 465 SER A 259 REMARK 465 SER A 260 REMARK 465 PRO A 261 REMARK 465 ASN A 262 REMARK 465 MET A 461 REMARK 465 THR A 462 REMARK 465 GLY B 220 REMARK 465 SER B 221 REMARK 465 SER B 222 REMARK 465 HIS B 223 REMARK 465 SER B 224 REMARK 465 SER B 225 REMARK 465 ALA B 226 REMARK 465 ASN B 227 REMARK 465 GLU B 228 REMARK 465 ASP B 229 REMARK 465 MET B 230 REMARK 465 PRO B 231 REMARK 465 VAL B 232 REMARK 465 GLU B 233 REMARK 465 ARG B 234 REMARK 465 ILE B 235 REMARK 465 LEU B 236 REMARK 465 GLU B 237 REMARK 465 ALA B 238 REMARK 465 GLU B 239 REMARK 465 LEU B 240 REMARK 465 ALA B 241 REMARK 465 VAL B 242 REMARK 465 GLU B 243 REMARK 465 PRO B 244 REMARK 465 LYS B 245 REMARK 465 THR B 246 REMARK 465 GLU B 247 REMARK 465 THR B 248 REMARK 465 TYR B 249 REMARK 465 VAL B 250 REMARK 465 GLU B 251 REMARK 465 ALA B 252 REMARK 465 ASN B 253 REMARK 465 MET B 254 REMARK 465 GLY B 255 REMARK 465 LEU B 256 REMARK 465 ASN B 257 REMARK 465 PRO B 258 REMARK 465 SER B 259 REMARK 465 SER B 260 REMARK 465 HIS B 459 REMARK 465 GLN B 460 REMARK 465 MET B 461 REMARK 465 THR B 462 REMARK 465 GLY C 220 REMARK 465 SER C 221 REMARK 465 SER C 222 REMARK 465 HIS C 223 REMARK 465 SER C 224 REMARK 465 SER C 225 REMARK 465 ALA C 226 REMARK 465 ASN C 227 REMARK 465 GLU C 228 REMARK 465 ASP C 229 REMARK 465 MET C 230 REMARK 465 PRO C 231 REMARK 465 VAL C 232 REMARK 465 GLU C 233 REMARK 465 ARG C 234 REMARK 465 ILE C 235 REMARK 465 LEU C 236 REMARK 465 GLU C 237 REMARK 465 ALA C 238 REMARK 465 GLU C 239 REMARK 465 LEU C 240 REMARK 465 ALA C 241 REMARK 465 VAL C 242 REMARK 465 GLU C 243 REMARK 465 PRO C 244 REMARK 465 LYS C 245 REMARK 465 THR C 246 REMARK 465 GLU C 247 REMARK 465 THR C 248 REMARK 465 TYR C 249 REMARK 465 VAL C 250 REMARK 465 GLU C 251 REMARK 465 ALA C 252 REMARK 465 ASN C 253 REMARK 465 MET C 254 REMARK 465 GLY C 255 REMARK 465 LEU C 256 REMARK 465 ASN C 257 REMARK 465 PRO C 258 REMARK 465 SER C 259 REMARK 465 SER C 260 REMARK 465 PRO C 261 REMARK 465 HIS C 459 REMARK 465 GLN C 460 REMARK 465 MET C 461 REMARK 465 THR C 462 REMARK 465 GLY D 220 REMARK 465 SER D 221 REMARK 465 SER D 222 REMARK 465 HIS D 223 REMARK 465 SER D 224 REMARK 465 SER D 225 REMARK 465 ALA D 226 REMARK 465 ASN D 227 REMARK 465 GLU D 228 REMARK 465 ASP D 229 REMARK 465 MET D 230 REMARK 465 PRO D 231 REMARK 465 VAL D 232 REMARK 465 GLU D 233 REMARK 465 ARG D 234 REMARK 465 ILE D 235 REMARK 465 LEU D 236 REMARK 465 GLU D 237 REMARK 465 ALA D 238 REMARK 465 GLU D 239 REMARK 465 LEU D 240 REMARK 465 ALA D 241 REMARK 465 VAL D 242 REMARK 465 GLU D 243 REMARK 465 PRO D 244 REMARK 465 LYS D 245 REMARK 465 THR D 246 REMARK 465 GLU D 247 REMARK 465 THR D 248 REMARK 465 TYR D 249 REMARK 465 VAL D 250 REMARK 465 GLU D 251 REMARK 465 ALA D 252 REMARK 465 ASN D 253 REMARK 465 MET D 254 REMARK 465 GLY D 255 REMARK 465 LEU D 256 REMARK 465 ASN D 257 REMARK 465 PRO D 258 REMARK 465 SER D 259 REMARK 465 SER D 260 REMARK 465 PRO D 261 REMARK 465 ASN D 262 REMARK 465 ASP D 263 REMARK 465 GLN D 460 REMARK 465 MET D 461 REMARK 465 THR D 462 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 288 -4.62 70.61 REMARK 500 ASN B 262 -147.51 -111.22 REMARK 500 ASP B 263 71.60 52.53 REMARK 500 HIS B 288 -3.52 70.14 REMARK 500 HIS C 288 -6.07 71.57 REMARK 500 HIS D 288 -5.70 71.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9HF A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9HF A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9HF B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9HF C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9HF D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9HF D 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR D 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR D 504 DBREF 5ZQU A 224 462 UNP P19793 RXRA_HUMAN 224 462 DBREF 5ZQU B 224 462 UNP P19793 RXRA_HUMAN 224 462 DBREF 5ZQU C 224 462 UNP P19793 RXRA_HUMAN 224 462 DBREF 5ZQU D 224 462 UNP P19793 RXRA_HUMAN 224 462 SEQADV 5ZQU GLY A 220 UNP P19793 EXPRESSION TAG SEQADV 5ZQU SER A 221 UNP P19793 EXPRESSION TAG SEQADV 5ZQU SER A 222 UNP P19793 EXPRESSION TAG SEQADV 5ZQU HIS A 223 UNP P19793 EXPRESSION TAG SEQADV 5ZQU GLY B 220 UNP P19793 EXPRESSION TAG SEQADV 5ZQU SER B 221 UNP P19793 EXPRESSION TAG SEQADV 5ZQU SER B 222 UNP P19793 EXPRESSION TAG SEQADV 5ZQU HIS B 223 UNP P19793 EXPRESSION TAG SEQADV 5ZQU GLY C 220 UNP P19793 EXPRESSION TAG SEQADV 5ZQU SER C 221 UNP P19793 EXPRESSION TAG SEQADV 5ZQU SER C 222 UNP P19793 EXPRESSION TAG SEQADV 5ZQU HIS C 223 UNP P19793 EXPRESSION TAG SEQADV 5ZQU GLY D 220 UNP P19793 EXPRESSION TAG SEQADV 5ZQU SER D 221 UNP P19793 EXPRESSION TAG SEQADV 5ZQU SER D 222 UNP P19793 EXPRESSION TAG SEQADV 5ZQU HIS D 223 UNP P19793 EXPRESSION TAG SEQRES 1 A 243 GLY SER SER HIS SER SER ALA ASN GLU ASP MET PRO VAL SEQRES 2 A 243 GLU ARG ILE LEU GLU ALA GLU LEU ALA VAL GLU PRO LYS SEQRES 3 A 243 THR GLU THR TYR VAL GLU ALA ASN MET GLY LEU ASN PRO SEQRES 4 A 243 SER SER PRO ASN ASP PRO VAL THR ASN ILE CYS GLN ALA SEQRES 5 A 243 ALA ASP LYS GLN LEU PHE THR LEU VAL GLU TRP ALA LYS SEQRES 6 A 243 ARG ILE PRO HIS PHE SER GLU LEU PRO LEU ASP ASP GLN SEQRES 7 A 243 VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU LEU ILE SEQRES 8 A 243 ALA SER PHE SER HIS ARG SER ILE ALA VAL LYS ASP GLY SEQRES 9 A 243 ILE LEU LEU ALA THR GLY LEU HIS VAL HIS ARG ASN SER SEQRES 10 A 243 ALA HIS SER ALA GLY VAL GLY ALA ILE PHE ASP ARG VAL SEQRES 11 A 243 LEU THR GLU LEU VAL SER LYS MET ARG ASP MET GLN MET SEQRES 12 A 243 ASP LYS THR GLU LEU GLY CYS LEU ARG ALA ILE VAL LEU SEQRES 13 A 243 PHE ASN PRO ASP SER LYS GLY LEU SER ASN PRO ALA GLU SEQRES 14 A 243 VAL GLU ALA LEU ARG GLU LYS VAL TYR ALA SER LEU GLU SEQRES 15 A 243 ALA TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO GLY ARG SEQRES 16 A 243 PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU ARG SER SEQRES 17 A 243 ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE PHE PHE LYS SEQRES 18 A 243 LEU ILE GLY ASP THR PRO ILE ASP THR PHE LEU MET GLU SEQRES 19 A 243 MET LEU GLU ALA PRO HIS GLN MET THR SEQRES 1 B 243 GLY SER SER HIS SER SER ALA ASN GLU ASP MET PRO VAL SEQRES 2 B 243 GLU ARG ILE LEU GLU ALA GLU LEU ALA VAL GLU PRO LYS SEQRES 3 B 243 THR GLU THR TYR VAL GLU ALA ASN MET GLY LEU ASN PRO SEQRES 4 B 243 SER SER PRO ASN ASP PRO VAL THR ASN ILE CYS GLN ALA SEQRES 5 B 243 ALA ASP LYS GLN LEU PHE THR LEU VAL GLU TRP ALA LYS SEQRES 6 B 243 ARG ILE PRO HIS PHE SER GLU LEU PRO LEU ASP ASP GLN SEQRES 7 B 243 VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU LEU ILE SEQRES 8 B 243 ALA SER PHE SER HIS ARG SER ILE ALA VAL LYS ASP GLY SEQRES 9 B 243 ILE LEU LEU ALA THR GLY LEU HIS VAL HIS ARG ASN SER SEQRES 10 B 243 ALA HIS SER ALA GLY VAL GLY ALA ILE PHE ASP ARG VAL SEQRES 11 B 243 LEU THR GLU LEU VAL SER LYS MET ARG ASP MET GLN MET SEQRES 12 B 243 ASP LYS THR GLU LEU GLY CYS LEU ARG ALA ILE VAL LEU SEQRES 13 B 243 PHE ASN PRO ASP SER LYS GLY LEU SER ASN PRO ALA GLU SEQRES 14 B 243 VAL GLU ALA LEU ARG GLU LYS VAL TYR ALA SER LEU GLU SEQRES 15 B 243 ALA TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO GLY ARG SEQRES 16 B 243 PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU ARG SER SEQRES 17 B 243 ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE PHE PHE LYS SEQRES 18 B 243 LEU ILE GLY ASP THR PRO ILE ASP THR PHE LEU MET GLU SEQRES 19 B 243 MET LEU GLU ALA PRO HIS GLN MET THR SEQRES 1 C 243 GLY SER SER HIS SER SER ALA ASN GLU ASP MET PRO VAL SEQRES 2 C 243 GLU ARG ILE LEU GLU ALA GLU LEU ALA VAL GLU PRO LYS SEQRES 3 C 243 THR GLU THR TYR VAL GLU ALA ASN MET GLY LEU ASN PRO SEQRES 4 C 243 SER SER PRO ASN ASP PRO VAL THR ASN ILE CYS GLN ALA SEQRES 5 C 243 ALA ASP LYS GLN LEU PHE THR LEU VAL GLU TRP ALA LYS SEQRES 6 C 243 ARG ILE PRO HIS PHE SER GLU LEU PRO LEU ASP ASP GLN SEQRES 7 C 243 VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU LEU ILE SEQRES 8 C 243 ALA SER PHE SER HIS ARG SER ILE ALA VAL LYS ASP GLY SEQRES 9 C 243 ILE LEU LEU ALA THR GLY LEU HIS VAL HIS ARG ASN SER SEQRES 10 C 243 ALA HIS SER ALA GLY VAL GLY ALA ILE PHE ASP ARG VAL SEQRES 11 C 243 LEU THR GLU LEU VAL SER LYS MET ARG ASP MET GLN MET SEQRES 12 C 243 ASP LYS THR GLU LEU GLY CYS LEU ARG ALA ILE VAL LEU SEQRES 13 C 243 PHE ASN PRO ASP SER LYS GLY LEU SER ASN PRO ALA GLU SEQRES 14 C 243 VAL GLU ALA LEU ARG GLU LYS VAL TYR ALA SER LEU GLU SEQRES 15 C 243 ALA TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO GLY ARG SEQRES 16 C 243 PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU ARG SER SEQRES 17 C 243 ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE PHE PHE LYS SEQRES 18 C 243 LEU ILE GLY ASP THR PRO ILE ASP THR PHE LEU MET GLU SEQRES 19 C 243 MET LEU GLU ALA PRO HIS GLN MET THR SEQRES 1 D 243 GLY SER SER HIS SER SER ALA ASN GLU ASP MET PRO VAL SEQRES 2 D 243 GLU ARG ILE LEU GLU ALA GLU LEU ALA VAL GLU PRO LYS SEQRES 3 D 243 THR GLU THR TYR VAL GLU ALA ASN MET GLY LEU ASN PRO SEQRES 4 D 243 SER SER PRO ASN ASP PRO VAL THR ASN ILE CYS GLN ALA SEQRES 5 D 243 ALA ASP LYS GLN LEU PHE THR LEU VAL GLU TRP ALA LYS SEQRES 6 D 243 ARG ILE PRO HIS PHE SER GLU LEU PRO LEU ASP ASP GLN SEQRES 7 D 243 VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU LEU ILE SEQRES 8 D 243 ALA SER PHE SER HIS ARG SER ILE ALA VAL LYS ASP GLY SEQRES 9 D 243 ILE LEU LEU ALA THR GLY LEU HIS VAL HIS ARG ASN SER SEQRES 10 D 243 ALA HIS SER ALA GLY VAL GLY ALA ILE PHE ASP ARG VAL SEQRES 11 D 243 LEU THR GLU LEU VAL SER LYS MET ARG ASP MET GLN MET SEQRES 12 D 243 ASP LYS THR GLU LEU GLY CYS LEU ARG ALA ILE VAL LEU SEQRES 13 D 243 PHE ASN PRO ASP SER LYS GLY LEU SER ASN PRO ALA GLU SEQRES 14 D 243 VAL GLU ALA LEU ARG GLU LYS VAL TYR ALA SER LEU GLU SEQRES 15 D 243 ALA TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO GLY ARG SEQRES 16 D 243 PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU ARG SER SEQRES 17 D 243 ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE PHE PHE LYS SEQRES 18 D 243 LEU ILE GLY ASP THR PRO ILE ASP THR PHE LEU MET GLU SEQRES 19 D 243 MET LEU GLU ALA PRO HIS GLN MET THR HET 9HF A 501 27 HET 9HF A 502 27 HET BR A 503 1 HET BR A 504 1 HET BR A 505 1 HET BR A 506 1 HET 9HF B 501 27 HET BR B 502 1 HET BR B 503 1 HET BR B 504 1 HET 9HF C 501 27 HET BR C 502 1 HET BR C 503 1 HET 9HF D 501 27 HET 9HF D 502 27 HET BR D 503 1 HET BR D 504 1 HETNAM 9HF 1-(3,5,5,8,8-PENTAMETHYL-6,7-DIHYDRONAPHTHALEN-2-YL) HETNAM 2 9HF BENZOTRIAZOLE-5-CARBOXYLIC ACID HETNAM BR BROMIDE ION HETSYN 9HF 1-(3,5,5,8,8-PENTAMETHYL-5,6,7,8-TETRAHYDRO-2- HETSYN 2 9HF NAPHTHYL)-1H-BENZOTRIAZOLE-5-CARBOXYLIC ACID FORMUL 5 9HF 6(C22 H25 N3 O2) FORMUL 7 BR 11(BR 1-) FORMUL 22 HOH *119(H2 O) HELIX 1 AA1 ASP A 263 ILE A 286 1 24 HELIX 2 AA2 PRO A 293 SER A 317 1 25 HELIX 3 AA3 ARG A 334 ALA A 340 1 7 HELIX 4 AA4 VAL A 342 LEU A 353 1 12 HELIX 5 AA5 LEU A 353 MET A 360 1 8 HELIX 6 AA6 ASP A 363 PHE A 376 1 14 HELIX 7 AA7 ASN A 385 TYR A 408 1 24 HELIX 8 AA8 GLY A 413 LEU A 420 1 8 HELIX 9 AA9 ARG A 421 HIS A 435 1 15 HELIX 10 AB1 LEU A 436 LEU A 441 1 6 HELIX 11 AB2 ASP A 444 ALA A 457 1 14 HELIX 12 AB3 ASP B 263 ILE B 286 1 24 HELIX 13 AB4 PRO B 293 SER B 317 1 25 HELIX 14 AB5 ARG B 334 ALA B 340 1 7 HELIX 15 AB6 VAL B 342 LEU B 353 1 12 HELIX 16 AB7 LEU B 353 MET B 360 1 8 HELIX 17 AB8 ASP B 363 PHE B 376 1 14 HELIX 18 AB9 ASN B 385 TYR B 408 1 24 HELIX 19 AC1 GLY B 413 LEU B 420 1 8 HELIX 20 AC2 ARG B 421 HIS B 435 1 15 HELIX 21 AC3 LEU B 436 GLY B 443 1 8 HELIX 22 AC4 GLY B 443 GLU B 456 1 14 HELIX 23 AC5 ASP C 263 ILE C 286 1 24 HELIX 24 AC6 PRO C 293 SER C 317 1 25 HELIX 25 AC7 ARG C 334 ALA C 340 1 7 HELIX 26 AC8 VAL C 342 LEU C 353 1 12 HELIX 27 AC9 LEU C 353 MET C 360 1 8 HELIX 28 AD1 ASP C 363 PHE C 376 1 14 HELIX 29 AD2 ASN C 385 TYR C 408 1 24 HELIX 30 AD3 GLY C 413 LEU C 420 1 8 HELIX 31 AD4 ARG C 421 HIS C 435 1 15 HELIX 32 AD5 LEU C 436 GLY C 443 1 8 HELIX 33 AD6 GLY C 443 ALA C 457 1 15 HELIX 34 AD7 VAL D 265 ILE D 286 1 22 HELIX 35 AD8 PRO D 293 SER D 317 1 25 HELIX 36 AD9 ARG D 334 ALA D 340 1 7 HELIX 37 AE1 VAL D 342 LEU D 353 1 12 HELIX 38 AE2 LEU D 353 MET D 360 1 8 HELIX 39 AE3 ASP D 363 PHE D 376 1 14 HELIX 40 AE4 ASN D 385 TYR D 408 1 24 HELIX 41 AE5 GLY D 413 LEU D 420 1 8 HELIX 42 AE6 ARG D 421 HIS D 435 1 15 HELIX 43 AE7 LEU D 436 LEU D 441 1 6 HELIX 44 AE8 ASP D 444 ALA D 457 1 14 SHEET 1 AA1 2 GLY A 323 LEU A 325 0 SHEET 2 AA1 2 HIS A 331 HIS A 333 -1 O VAL A 332 N ILE A 324 SHEET 1 AA2 2 GLY B 323 LEU B 325 0 SHEET 2 AA2 2 HIS B 331 HIS B 333 -1 O VAL B 332 N ILE B 324 SHEET 1 AA3 2 GLY C 323 LEU C 325 0 SHEET 2 AA3 2 HIS C 331 HIS C 333 -1 O VAL C 332 N ILE C 324 SHEET 1 AA4 2 GLY D 323 LEU D 325 0 SHEET 2 AA4 2 HIS D 331 HIS D 333 -1 O VAL D 332 N ILE D 324 SSBOND 1 CYS A 269 CYS C 269 1555 1555 2.03 SSBOND 2 CYS B 269 CYS D 269 1555 1555 2.03 SITE 1 AC1 10 ALA A 272 GLN A 275 TRP A 305 ASN A 306 SITE 2 AC1 10 LEU A 309 ARG A 316 LEU A 326 ALA A 327 SITE 3 AC1 10 PHE A 438 9HF A 502 SITE 1 AC2 7 ALA A 272 TRP A 305 LEU A 433 PHE A 439 SITE 2 AC2 7 9HF A 501 LEU C 436 PHE C 439 SITE 1 AC3 4 ARG A 393 HOH A 610 ARG B 421 HOH B 606 SITE 1 AC4 2 ARG A 421 ARG B 393 SITE 1 AC5 1 ARG A 348 SITE 1 AC6 9 ILE B 268 ALA B 272 GLN B 275 TRP B 305 SITE 2 AC6 9 LEU B 309 LEU B 326 ALA B 327 PHE B 438 SITE 3 AC6 9 PHE B 439 SITE 1 AC7 1 ARG B 371 SITE 1 AC8 1 ARG B 348 SITE 1 AC9 1 ARG B 371 SITE 1 AD1 10 ILE C 268 ALA C 271 ALA C 272 GLN C 275 SITE 2 AD1 10 TRP C 305 LEU C 309 ARG C 316 LEU C 326 SITE 3 AD1 10 ALA C 327 PHE C 439 SITE 1 AD2 3 ARG C 393 ARG D 421 HOH D 605 SITE 1 AD3 2 ARG C 348 LYS C 431 SITE 1 AD4 11 ALA D 272 GLN D 275 TRP D 305 ASN D 306 SITE 2 AD4 11 LEU D 309 PHE D 313 ARG D 316 LEU D 326 SITE 3 AD4 11 ALA D 327 PHE D 438 9HF D 502 SITE 1 AD5 6 LEU B 436 PHE B 439 LEU D 433 PHE D 438 SITE 2 AD5 6 PHE D 439 9HF D 501 SITE 1 AD6 2 ARG C 421 ARG D 393 SITE 1 AD7 1 ARG D 348 CRYST1 46.571 100.492 111.010 90.00 99.27 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021473 0.000000 0.003504 0.00000 SCALE2 0.000000 0.009951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009127 0.00000