HEADER CHAPERONE 21-APR-18 5ZR0 TITLE SOLUTION STRUCTURE OF PEPTIDYL-PROLYL CIS/TRANS ISOMERASE DOMAIN OF TITLE 2 TRIGGER FACTOR IN COMPLEX WITH MBP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN,TRIGGER FACTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN,TF,PPIASE; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333, 595496; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: MALE, B4034, JW3994, TIG, BWG_0318; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MOLECULAR CHAPERONE, PEPTIDYL-PROLYL ISOMERASES, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.KAWAGOE,H.NAKAGAWA,H.KUMETA,K.ISHIMORI,T.SAIO REVDAT 3 01-MAY-24 5ZR0 1 COMPND REMARK REVDAT 2 10-OCT-18 5ZR0 1 COMPND JRNL REVDAT 1 22-AUG-18 5ZR0 0 JRNL AUTH S.KAWAGOE,H.NAKAGAWA,H.KUMETA,K.ISHIMORI,T.SAIO JRNL TITL STRUCTURAL INSIGHT INTO PROLINECIS/TRANSISOMERIZATION OF JRNL TITL 2 UNFOLDED PROTEINS CATALYZED BY THE TRIGGER FACTOR CHAPERONE. JRNL REF J. BIOL. CHEM. V. 293 15095 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30093407 JRNL DOI 10.1074/JBC.RA118.003579 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-18. REMARK 100 THE DEPOSITION ID IS D_1300007512. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 MBP238-266-PPD FUSION, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCA; 3D HNCACB; 3D REMARK 210 HNCO; 3D HN(CO)CA; 3D CBCA(CO)NH; REMARK 210 3D HNCAHA; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 2D HBCBCGCDHD; 2D REMARK 210 HBCBCGCDCEHE; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : OLIVIA, CYANA, NMRPIPE REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 119 83.70 -67.02 REMARK 500 1 LYS A 136 -70.43 -81.45 REMARK 500 1 SER A 139 85.71 -67.37 REMARK 500 1 ASP A 200 -145.53 -147.12 REMARK 500 1 TYR A 221 107.62 -59.63 REMARK 500 1 LYS A 238 -75.66 -55.73 REMARK 500 1 ARG A 243 54.91 -167.95 REMARK 500 1 LEU A 248 99.78 -69.75 REMARK 500 2 THR A 119 95.10 -65.69 REMARK 500 2 SER A 130 85.25 -69.28 REMARK 500 2 ILE A 132 12.69 54.98 REMARK 500 2 ASP A 133 -69.18 -104.36 REMARK 500 2 SER A 143 -71.18 -96.29 REMARK 500 2 GLU A 224 -75.27 -67.43 REMARK 500 2 LYS A 238 -76.50 -62.21 REMARK 500 2 ARG A 243 78.51 -114.88 REMARK 500 3 MET A 121 -174.83 -66.35 REMARK 500 3 TRP A 129 41.14 -87.98 REMARK 500 3 LYS A 136 99.07 -60.79 REMARK 500 3 PHE A 198 25.96 -79.74 REMARK 500 3 GLU A 224 -73.36 -79.86 REMARK 500 3 LYS A 227 37.10 -93.09 REMARK 500 3 LYS A 238 -77.12 -62.05 REMARK 500 3 GLU A 242 -129.46 -145.71 REMARK 500 3 GLU A 244 98.38 -68.83 REMARK 500 3 LEU A 245 77.38 58.04 REMARK 500 3 LEU A 248 93.90 -68.63 REMARK 500 4 SER A 130 87.61 -66.75 REMARK 500 4 ILE A 132 -36.34 70.76 REMARK 500 4 SER A 141 -76.78 -168.80 REMARK 500 4 GLN A 148 91.31 -66.58 REMARK 500 4 HIS A 222 71.96 -69.32 REMARK 500 4 ALA A 223 105.70 -168.18 REMARK 500 4 LEU A 226 59.66 -96.23 REMARK 500 4 LYS A 227 82.34 -66.75 REMARK 500 4 LYS A 238 -91.81 -74.11 REMARK 500 4 GLU A 241 -83.45 -91.19 REMARK 500 4 GLU A 242 119.44 -163.80 REMARK 500 5 MET A 121 -176.26 -68.89 REMARK 500 5 SER A 143 -150.13 50.54 REMARK 500 5 GLU A 219 29.63 -77.94 REMARK 500 5 LYS A 238 -70.72 -76.62 REMARK 500 5 GLU A 241 -82.68 -80.88 REMARK 500 5 ARG A 243 116.78 -170.79 REMARK 500 6 ILE A 123 109.82 -49.20 REMARK 500 6 ASN A 131 -149.98 -95.16 REMARK 500 6 ASP A 133 -36.10 -153.24 REMARK 500 6 SER A 135 -75.16 -106.17 REMARK 500 6 LYS A 136 142.22 176.06 REMARK 500 6 SER A 139 15.67 55.75 REMARK 500 REMARK 500 THIS ENTRY HAS 187 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36181 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF PEPTIDYL-PROLYL CIS/TRANS ISOMERASE DOMAIN OF REMARK 900 TRIGGER FACTOR IN COMPLEX WITH MBP DBREF 5ZR0 A 109 137 UNP P0AEX9 MALE_ECOLI 238 266 DBREF 5ZR0 A 148 249 UNP C4ZTJ3 TIG_ECOBW 148 249 SEQADV 5ZR0 GLY A 108 UNP P0AEX9 EXPRESSION TAG SEQADV 5ZR0 GLY A 138 UNP P0AEX9 LINKER SEQADV 5ZR0 SER A 139 UNP P0AEX9 LINKER SEQADV 5ZR0 GLY A 140 UNP P0AEX9 LINKER SEQADV 5ZR0 SER A 141 UNP P0AEX9 LINKER SEQADV 5ZR0 GLY A 142 UNP P0AEX9 LINKER SEQADV 5ZR0 SER A 143 UNP P0AEX9 LINKER SEQADV 5ZR0 GLY A 144 UNP P0AEX9 LINKER SEQADV 5ZR0 SER A 145 UNP P0AEX9 LINKER SEQADV 5ZR0 GLY A 146 UNP P0AEX9 LINKER SEQADV 5ZR0 SER A 147 UNP P0AEX9 LINKER SEQRES 1 A 142 GLY ILE ALA GLU ALA ALA PHE ASN LYS GLY GLU THR ALA SEQRES 2 A 142 MET THR ILE ASN GLY PRO TRP ALA TRP SER ASN ILE ASP SEQRES 3 A 142 THR SER LYS VAL GLY SER GLY SER GLY SER GLY SER GLY SEQRES 4 A 142 SER GLN ALA THR TRP LYS GLU LYS ASP GLY ALA VAL GLU SEQRES 5 A 142 ALA GLU ASP ARG VAL THR ILE ASP PHE THR GLY SER VAL SEQRES 6 A 142 ASP GLY GLU GLU PHE GLU GLY GLY LYS ALA SER ASP PHE SEQRES 7 A 142 VAL LEU ALA MET GLY GLN GLY ARG MET ILE PRO GLY PHE SEQRES 8 A 142 GLU ASP GLY ILE LYS GLY HIS LYS ALA GLY GLU GLU PHE SEQRES 9 A 142 THR ILE ASP VAL THR PHE PRO GLU GLU TYR HIS ALA GLU SEQRES 10 A 142 ASN LEU LYS GLY LYS ALA ALA LYS PHE ALA ILE ASN LEU SEQRES 11 A 142 LYS LYS VAL GLU GLU ARG GLU LEU PRO GLU LEU THR HELIX 1 AA1 GLY A 108 ALA A 113 1 6 HELIX 2 AA2 ILE A 195 ASP A 200 5 6 SHEET 1 AA1 2 ARG A 163 PHE A 168 0 SHEET 2 AA1 2 ALA A 182 ALA A 188 -1 O PHE A 185 N ILE A 166 SHEET 1 AA2 4 GLU A 175 GLU A 176 0 SHEET 2 AA2 4 SER A 171 VAL A 172 -1 N VAL A 172 O GLU A 175 SHEET 3 AA2 4 ALA A 230 ASN A 236 -1 O LYS A 232 N SER A 171 SHEET 4 AA2 4 GLU A 210 THR A 216 -1 N VAL A 215 O ALA A 231 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1