HEADER HYDROLASE 23-APR-18 5ZR8 TITLE CRYSTAL STRUCTURE OF NDM-1 METALLO-BETA-LACTAMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, E; COMPND 4 SYNONYM: BETA-LACTAMASE NDM-1,BLANDM-1,BLANDM-1 METALLO BETA COMPND 5 LACTAMASE,METALLO-BETA-LACTAMASE NDM-1,NDM-1,NDM-1 METALLO-BETA- COMPND 6 LACTAMASE,NEW DELHI METALLO-BETA-LACTAMASE NDM-1,NEW DELHI METALLO- COMPND 7 BETA-LACTAMASE-1,SUBCLASS B1 METALLO-BETA-LACTAMASE NDM-1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: BLANDM-1, BLA NDM-1, AM434_27040, APU18_05360, AZ95_0035, SOURCE 5 BET08_16280, BVL39_26630, CA268_28970, ECS01_0033, MS6198_A142, SOURCE 6 NDM1DOK01_N0175, PNDM102337_147, PNDM10505_149; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WACHINO REVDAT 2 22-NOV-23 5ZR8 1 LINK REVDAT 1 24-APR-19 5ZR8 0 JRNL AUTH J.WACHINO JRNL TITL CRYSTAL STRUCTURE OF NDM-1 METALLO-BETA-LACTAMASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 62831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3365 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4593 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE SET COUNT : 242 REMARK 3 BIN FREE R VALUE : 0.2020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3418 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 515 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.065 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.015 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3592 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3239 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4886 ; 1.443 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7498 ; 0.773 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 476 ; 6.836 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;30.573 ;24.510 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 537 ;14.553 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;21.398 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 545 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4089 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 716 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1856 ; 1.820 ; 1.167 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1855 ; 1.792 ; 1.165 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2321 ; 2.653 ; 1.745 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2322 ; 2.652 ; 1.747 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1736 ; 2.991 ; 1.456 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1737 ; 2.990 ; 1.455 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2557 ; 4.305 ; 2.044 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4036 ; 5.521 ;15.298 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3985 ; 5.484 ;14.981 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300007527. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66267 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 53.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 0.43900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4EYB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1 M BIS-TRIS REMARK 280 [PH 6.1], 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.54000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.87500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.87500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.54000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -271.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 HIS A 27 REMARK 465 MET A 28 REMARK 465 GLY A 29 REMARK 465 GLU A 30 REMARK 465 ILE A 31 REMARK 465 ARG A 32 REMARK 465 PRO A 33 REMARK 465 THR A 34 REMARK 465 ILE A 35 REMARK 465 GLY A 36 REMARK 465 GLN A 37 REMARK 465 GLN A 38 REMARK 465 MET A 39 REMARK 465 GLU A 40 REMARK 465 THR A 41 REMARK 465 GLY E 25 REMARK 465 SER E 26 REMARK 465 HIS E 27 REMARK 465 MET E 28 REMARK 465 GLY E 29 REMARK 465 GLU E 30 REMARK 465 ILE E 31 REMARK 465 ARG E 32 REMARK 465 PRO E 33 REMARK 465 THR E 34 REMARK 465 ILE E 35 REMARK 465 GLY E 36 REMARK 465 GLN E 37 REMARK 465 GLN E 38 REMARK 465 MET E 39 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 142.32 77.30 REMARK 500 ASP E 90 144.40 75.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 664 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH E 651 DISTANCE = 5.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 NE2 REMARK 620 2 HIS A 122 ND1 99.2 REMARK 620 3 HIS A 189 NE2 101.4 112.6 REMARK 620 4 HOH A 584 O 133.7 113.0 96.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 CYS A 208 SG 108.1 REMARK 620 3 HIS A 250 NE2 90.6 107.1 REMARK 620 4 HOH A 584 O 111.6 113.9 122.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 152 OE1 REMARK 620 2 GLU A 152 OE2 53.1 REMARK 620 3 ASP A 223 OD2 98.0 101.0 REMARK 620 4 GLU E 227 OE1 152.8 100.2 91.7 REMARK 620 5 GLU E 227 OE2 110.5 84.2 147.2 55.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 307 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 227 OE1 REMARK 620 2 GLU A 227 OE2 53.5 REMARK 620 3 GLU E 152 OE1 148.1 116.2 REMARK 620 4 GLU E 152 OE2 95.7 88.2 52.4 REMARK 620 5 ASP E 223 OD2 84.8 138.2 99.9 98.8 REMARK 620 6 HOH E 548 O 137.4 108.0 72.9 123.9 101.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 120 NE2 REMARK 620 2 HIS E 122 ND1 98.7 REMARK 620 3 HIS E 189 NE2 99.3 113.6 REMARK 620 4 HOH E 596 O 133.9 112.4 98.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 124 OD2 REMARK 620 2 CYS E 208 SG 108.9 REMARK 620 3 HIS E 250 NE2 90.8 106.8 REMARK 620 4 HOH E 596 O 109.1 115.3 122.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 302 DBREF 5ZR8 A 29 270 UNP E5KIY2 E5KIY2_ECOLX 29 270 DBREF 5ZR8 E 29 270 UNP E5KIY2 E5KIY2_ECOLX 29 270 SEQADV 5ZR8 GLY A 25 UNP E5KIY2 EXPRESSION TAG SEQADV 5ZR8 SER A 26 UNP E5KIY2 EXPRESSION TAG SEQADV 5ZR8 HIS A 27 UNP E5KIY2 EXPRESSION TAG SEQADV 5ZR8 MET A 28 UNP E5KIY2 EXPRESSION TAG SEQADV 5ZR8 GLY E 25 UNP E5KIY2 EXPRESSION TAG SEQADV 5ZR8 SER E 26 UNP E5KIY2 EXPRESSION TAG SEQADV 5ZR8 HIS E 27 UNP E5KIY2 EXPRESSION TAG SEQADV 5ZR8 MET E 28 UNP E5KIY2 EXPRESSION TAG SEQRES 1 A 246 GLY SER HIS MET GLY GLU ILE ARG PRO THR ILE GLY GLN SEQRES 2 A 246 GLN MET GLU THR GLY ASP GLN ARG PHE GLY ASP LEU VAL SEQRES 3 A 246 PHE ARG GLN LEU ALA PRO ASN VAL TRP GLN HIS THR SER SEQRES 4 A 246 TYR LEU ASP MET PRO GLY PHE GLY ALA VAL ALA SER ASN SEQRES 5 A 246 GLY LEU ILE VAL ARG ASP GLY GLY ARG VAL LEU VAL VAL SEQRES 6 A 246 ASP THR ALA TRP THR ASP ASP GLN THR ALA GLN ILE LEU SEQRES 7 A 246 ASN TRP ILE LYS GLN GLU ILE ASN LEU PRO VAL ALA LEU SEQRES 8 A 246 ALA VAL VAL THR HIS ALA HIS GLN ASP LYS MET GLY GLY SEQRES 9 A 246 MET ASP ALA LEU HIS ALA ALA GLY ILE ALA THR TYR ALA SEQRES 10 A 246 ASN ALA LEU SER ASN GLN LEU ALA PRO GLN GLU GLY MET SEQRES 11 A 246 VAL ALA ALA GLN HIS SER LEU THR PHE ALA ALA ASN GLY SEQRES 12 A 246 TRP VAL GLU PRO ALA THR ALA PRO ASN PHE GLY PRO LEU SEQRES 13 A 246 LYS VAL PHE TYR PRO GLY PRO GLY HIS THR SER ASP ASN SEQRES 14 A 246 ILE THR VAL GLY ILE ASP GLY THR ASP ILE ALA PHE GLY SEQRES 15 A 246 GLY CYS LEU ILE LYS ASP SER LYS ALA LYS SER LEU GLY SEQRES 16 A 246 ASN LEU GLY ASP ALA ASP THR GLU HIS TYR ALA ALA SER SEQRES 17 A 246 ALA ARG ALA PHE GLY ALA ALA PHE PRO LYS ALA SER MET SEQRES 18 A 246 ILE VAL MET SER HIS SER ALA PRO ASP SER ARG ALA ALA SEQRES 19 A 246 ILE THR HIS THR ALA ARG MET ALA ASP LYS LEU ARG SEQRES 1 E 246 GLY SER HIS MET GLY GLU ILE ARG PRO THR ILE GLY GLN SEQRES 2 E 246 GLN MET GLU THR GLY ASP GLN ARG PHE GLY ASP LEU VAL SEQRES 3 E 246 PHE ARG GLN LEU ALA PRO ASN VAL TRP GLN HIS THR SER SEQRES 4 E 246 TYR LEU ASP MET PRO GLY PHE GLY ALA VAL ALA SER ASN SEQRES 5 E 246 GLY LEU ILE VAL ARG ASP GLY GLY ARG VAL LEU VAL VAL SEQRES 6 E 246 ASP THR ALA TRP THR ASP ASP GLN THR ALA GLN ILE LEU SEQRES 7 E 246 ASN TRP ILE LYS GLN GLU ILE ASN LEU PRO VAL ALA LEU SEQRES 8 E 246 ALA VAL VAL THR HIS ALA HIS GLN ASP LYS MET GLY GLY SEQRES 9 E 246 MET ASP ALA LEU HIS ALA ALA GLY ILE ALA THR TYR ALA SEQRES 10 E 246 ASN ALA LEU SER ASN GLN LEU ALA PRO GLN GLU GLY MET SEQRES 11 E 246 VAL ALA ALA GLN HIS SER LEU THR PHE ALA ALA ASN GLY SEQRES 12 E 246 TRP VAL GLU PRO ALA THR ALA PRO ASN PHE GLY PRO LEU SEQRES 13 E 246 LYS VAL PHE TYR PRO GLY PRO GLY HIS THR SER ASP ASN SEQRES 14 E 246 ILE THR VAL GLY ILE ASP GLY THR ASP ILE ALA PHE GLY SEQRES 15 E 246 GLY CYS LEU ILE LYS ASP SER LYS ALA LYS SER LEU GLY SEQRES 16 E 246 ASN LEU GLY ASP ALA ASP THR GLU HIS TYR ALA ALA SER SEQRES 17 E 246 ALA ARG ALA PHE GLY ALA ALA PHE PRO LYS ALA SER MET SEQRES 18 E 246 ILE VAL MET SER HIS SER ALA PRO ASP SER ARG ALA ALA SEQRES 19 E 246 ILE THR HIS THR ALA ARG MET ALA ASP LYS LEU ARG HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET ZN A 307 1 HET ZN E 301 1 HET ZN E 302 1 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 3 ZN 6(ZN 2+) FORMUL 6 SO4 3(O4 S 2-) FORMUL 12 HOH *515(H2 O) HELIX 1 AA1 THR A 94 ILE A 109 1 16 HELIX 2 AA2 HIS A 122 GLY A 127 1 6 HELIX 3 AA3 GLY A 128 ALA A 135 1 8 HELIX 4 AA4 ALA A 143 ALA A 149 1 7 HELIX 5 AA5 GLU A 170 ALA A 174 5 5 HELIX 6 AA6 CYS A 208 ILE A 210 5 3 HELIX 7 AA7 HIS A 228 PHE A 240 1 13 HELIX 8 AA8 ARG A 256 LYS A 268 1 13 HELIX 9 AA9 THR E 94 ILE E 109 1 16 HELIX 10 AB1 HIS E 122 GLY E 127 1 6 HELIX 11 AB2 GLY E 128 ALA E 135 1 8 HELIX 12 AB3 ALA E 143 ALA E 149 1 7 HELIX 13 AB4 GLU E 170 ALA E 174 5 5 HELIX 14 AB5 CYS E 208 ILE E 210 5 3 HELIX 15 AB6 HIS E 228 PHE E 240 1 13 HELIX 16 AB7 ARG E 256 LYS E 268 1 13 SHEET 1 AA1 8 ASP A 43 PHE A 46 0 SHEET 2 AA1 8 LEU A 49 ALA A 55 -1 O PHE A 51 N GLN A 44 SHEET 3 AA1 8 VAL A 58 MET A 67 -1 O GLN A 60 N ARG A 52 SHEET 4 AA1 8 GLY A 71 ASP A 82 -1 O GLY A 71 N MET A 67 SHEET 5 AA1 8 ARG A 85 VAL A 89 -1 O ARG A 85 N ASP A 82 SHEET 6 AA1 8 VAL A 113 VAL A 117 1 O VAL A 117 N VAL A 88 SHEET 7 AA1 8 ALA A 138 ASN A 142 1 O TYR A 140 N ALA A 116 SHEET 8 AA1 8 HIS A 159 LEU A 161 1 O LEU A 161 N ALA A 141 SHEET 1 AA2 4 LEU A 180 PHE A 183 0 SHEET 2 AA2 4 THR A 195 ILE A 198 -1 O GLY A 197 N LYS A 181 SHEET 3 AA2 4 ILE A 203 GLY A 207 -1 O PHE A 205 N VAL A 196 SHEET 4 AA2 4 MET A 245 MET A 248 1 O VAL A 247 N GLY A 206 SHEET 1 AA3 8 GLN E 44 PHE E 46 0 SHEET 2 AA3 8 LEU E 49 ALA E 55 -1 O PHE E 51 N GLN E 44 SHEET 3 AA3 8 VAL E 58 MET E 67 -1 O GLN E 60 N ARG E 52 SHEET 4 AA3 8 GLY E 71 ASP E 82 -1 O ILE E 79 N TRP E 59 SHEET 5 AA3 8 ARG E 85 VAL E 89 -1 O VAL E 89 N LEU E 78 SHEET 6 AA3 8 VAL E 113 VAL E 117 1 O VAL E 117 N VAL E 88 SHEET 7 AA3 8 ALA E 138 ASN E 142 1 O ALA E 138 N ALA E 116 SHEET 8 AA3 8 HIS E 159 LEU E 161 1 O LEU E 161 N ALA E 141 SHEET 1 AA4 4 LEU E 180 PHE E 183 0 SHEET 2 AA4 4 THR E 195 ILE E 198 -1 O GLY E 197 N LYS E 181 SHEET 3 AA4 4 ILE E 203 GLY E 207 -1 O PHE E 205 N VAL E 196 SHEET 4 AA4 4 MET E 245 MET E 248 1 O VAL E 247 N GLY E 206 LINK NE2 HIS A 120 ZN ZN A 301 1555 1555 2.03 LINK ND1 HIS A 122 ZN ZN A 301 1555 1555 2.01 LINK OD2 ASP A 124 ZN ZN A 302 1555 1555 1.92 LINK OE1 GLU A 152 ZN ZN A 303 1555 1555 2.65 LINK OE2 GLU A 152 ZN ZN A 303 1555 1555 2.10 LINK NE2 HIS A 189 ZN ZN A 301 1555 1555 2.02 LINK SG CYS A 208 ZN ZN A 302 1555 1555 2.26 LINK OD2 ASP A 223 ZN ZN A 303 1555 1555 1.99 LINK OE1 GLU A 227 ZN ZN A 307 1555 1555 2.66 LINK OE2 GLU A 227 ZN ZN A 307 1555 1555 2.12 LINK NE2 HIS A 250 ZN ZN A 302 1555 1555 2.04 LINK ZN ZN A 301 O HOH A 584 1555 1555 2.25 LINK ZN ZN A 302 O HOH A 584 1555 1555 2.26 LINK ZN ZN A 303 OE1 GLU E 227 1555 1555 2.58 LINK ZN ZN A 303 OE2 GLU E 227 1555 1555 2.13 LINK ZN ZN A 307 OE1 GLU E 152 1555 1555 2.65 LINK ZN ZN A 307 OE2 GLU E 152 1555 1555 2.15 LINK ZN ZN A 307 OD2 ASP E 223 1555 1555 2.01 LINK ZN ZN A 307 O HOH E 548 1555 1555 2.27 LINK NE2 HIS E 120 ZN ZN E 301 1555 1555 2.03 LINK ND1 HIS E 122 ZN ZN E 301 1555 1555 2.04 LINK OD2 ASP E 124 ZN ZN E 302 1555 1555 1.95 LINK NE2 HIS E 189 ZN ZN E 301 1555 1555 2.03 LINK SG CYS E 208 ZN ZN E 302 1555 1555 2.25 LINK NE2 HIS E 250 ZN ZN E 302 1555 1555 2.09 LINK ZN ZN E 301 O HOH E 596 1555 1555 2.23 LINK ZN ZN E 302 O HOH E 596 1555 1555 2.23 SITE 1 AC1 4 HIS A 120 HIS A 122 HIS A 189 HOH A 584 SITE 1 AC2 4 ASP A 124 CYS A 208 HIS A 250 HOH A 584 SITE 1 AC3 3 GLU A 152 ASP A 223 GLU E 227 SITE 1 AC4 5 ARG A 234 THR A 260 ARG A 264 HOH A 464 SITE 2 AC4 5 GLN E 44 SITE 1 AC5 4 ARG A 256 HOH A 408 HOH A 429 HOH A 532 SITE 1 AC6 5 LYS A 211 ALA A 215 LYS A 216 SER A 217 SITE 2 AC6 5 HOH A 480 SITE 1 AC7 4 GLU A 227 GLU E 152 ASP E 223 HOH E 548 SITE 1 AC8 5 HIS E 120 HIS E 122 HIS E 189 ZN E 302 SITE 2 AC8 5 HOH E 596 SITE 1 AC9 5 ASP E 124 CYS E 208 HIS E 250 ZN E 301 SITE 2 AC9 5 HOH E 596 CRYST1 71.080 73.900 77.750 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014069 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013532 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012862 0.00000