HEADER HYDROLASE 25-APR-18 5ZRQ TITLE CRYSTAL STRUCTURE OF PET-DEGRADING CUTINASE CUT190 S176A/S226P/R228S TITLE 2 MUTANT IN ZN(2+)-BOUND STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA/BETA HYDROLASE FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CUTINASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMONOSPORA VIRIDIS; SOURCE 3 ORGANISM_TAXID: 1852; SOURCE 4 GENE: CUT190, SAMN02982918_2340; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE80L KEYWDS POLYESTERASE, ALPHA/BETA-HYDROLASE FOLD, PROTEIN ENGINEERING, KEYWDS 2 THERMOSTABILITY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.NUMOTO,N.KAMIYA,G.J.BEKKER,Y.YAMAGAMI,S.INABA,K.ISHII,S.UCHIYAMA, AUTHOR 2 F.KAWAI,N.ITO,M.ODA REVDAT 4 16-OCT-24 5ZRQ 1 REMARK REVDAT 3 22-NOV-23 5ZRQ 1 LINK REVDAT 2 26-SEP-18 5ZRQ 1 JRNL REVDAT 1 12-SEP-18 5ZRQ 0 JRNL AUTH N.NUMOTO,N.KAMIYA,G.J.BEKKER,Y.YAMAGAMI,S.INABA,K.ISHII, JRNL AUTH 2 S.UCHIYAMA,F.KAWAI,N.ITO,M.ODA JRNL TITL STRUCTURAL DYNAMICS OF THE PET-DEGRADING CUTINASE-LIKE JRNL TITL 2 ENZYME FROM SACCHAROMONOSPORA VIRIDIS AHK190 IN JRNL TITL 3 SUBSTRATE-BOUND STATES ELUCIDATES THE CA2+-DRIVEN CATALYTIC JRNL TITL 4 CYCLE. JRNL REF BIOCHEMISTRY V. 57 5289 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 30110540 JRNL DOI 10.1021/ACS.BIOCHEM.8B00624 REMARK 2 REMARK 2 RESOLUTION. 1.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 93488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.122 REMARK 3 R VALUE (WORKING SET) : 0.121 REMARK 3 FREE R VALUE : 0.142 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.015 REMARK 3 FREE R VALUE TEST SET COUNT : 4688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3472 - 3.4644 0.99 3318 173 0.1379 0.1500 REMARK 3 2 3.4644 - 2.7499 1.00 3195 171 0.1397 0.1771 REMARK 3 3 2.7499 - 2.4024 1.00 3175 162 0.1375 0.1507 REMARK 3 4 2.4024 - 2.1827 1.00 3133 168 0.1268 0.1434 REMARK 3 5 2.1827 - 2.0263 1.00 3149 165 0.1190 0.1347 REMARK 3 6 2.0263 - 1.9068 1.00 3125 166 0.1143 0.1138 REMARK 3 7 1.9068 - 1.8113 1.00 3131 161 0.1127 0.1211 REMARK 3 8 1.8113 - 1.7325 1.00 3088 171 0.1090 0.1272 REMARK 3 9 1.7325 - 1.6658 1.00 3115 159 0.1048 0.1378 REMARK 3 10 1.6658 - 1.6083 1.00 3125 162 0.0985 0.1339 REMARK 3 11 1.6083 - 1.5580 1.00 3087 167 0.0984 0.1193 REMARK 3 12 1.5580 - 1.5135 1.00 3083 160 0.0954 0.1072 REMARK 3 13 1.5135 - 1.4736 1.00 3105 160 0.0946 0.1146 REMARK 3 14 1.4736 - 1.4377 1.00 3068 163 0.0972 0.1192 REMARK 3 15 1.4377 - 1.4050 1.00 3097 166 0.1013 0.1338 REMARK 3 16 1.4050 - 1.3751 1.00 3079 162 0.1011 0.1365 REMARK 3 17 1.3751 - 1.3476 1.00 3096 160 0.1057 0.1422 REMARK 3 18 1.3476 - 1.3221 1.00 3088 161 0.1056 0.1321 REMARK 3 19 1.3221 - 1.2985 1.00 3086 167 0.1082 0.1459 REMARK 3 20 1.2985 - 1.2765 1.00 3071 161 0.1071 0.1363 REMARK 3 21 1.2765 - 1.2559 1.00 3086 161 0.1143 0.1303 REMARK 3 22 1.2559 - 1.2366 1.00 3067 162 0.1160 0.1606 REMARK 3 23 1.2366 - 1.2184 0.98 3001 155 0.1268 0.1540 REMARK 3 24 1.2184 - 1.2012 0.95 2896 155 0.1300 0.1569 REMARK 3 25 1.2012 - 1.1850 0.91 2782 154 0.1267 0.1365 REMARK 3 26 1.1850 - 1.1696 0.87 2643 139 0.1299 0.1392 REMARK 3 27 1.1696 - 1.1550 0.81 2494 134 0.1348 0.1912 REMARK 3 28 1.1550 - 1.1411 0.76 2308 129 0.1454 0.1517 REMARK 3 29 1.1411 - 1.1278 0.71 2183 114 0.1512 0.1710 REMARK 3 30 1.1278 - 1.1151 0.63 1926 100 0.1635 0.2211 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.066 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2154 REMARK 3 ANGLE : 1.280 2939 REMARK 3 CHIRALITY : 0.085 313 REMARK 3 PLANARITY : 0.008 389 REMARK 3 DIHEDRAL : 12.057 805 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZRQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300007538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8000 REMARK 200 MONOCHROMATOR : FIXED EXIT SI (111) DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93489 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.120 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WFJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M ZNSO4, 0.1 M MES PH 6.5, 25% REMARK 280 V/V PEG MME 550, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.09800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.33750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.62150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.33750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.09800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.62150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 306 REMARK 465 ASN A 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 705 O HOH A 793 2.08 REMARK 500 O HOH A 716 O HOH A 850 2.15 REMARK 500 O HOH A 525 O HOH A 842 2.15 REMARK 500 O HOH A 743 O HOH A 790 2.15 REMARK 500 O HOH A 777 O HOH A 859 2.18 REMARK 500 O HOH A 610 O HOH A 766 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 503 O HOH A 819 2455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 47 109.32 -163.80 REMARK 500 THR A 107 -2.17 71.72 REMARK 500 ALA A 176 -122.16 67.43 REMARK 500 THR A 199 57.79 33.11 REMARK 500 HIS A 230 -88.50 -116.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 928 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 929 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 930 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 931 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 932 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 933 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 934 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A 935 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 936 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 937 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A 938 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A 939 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A 940 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH A 941 DISTANCE = 8.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 43 N REMARK 620 2 GLY A 43 O 79.7 REMARK 620 3 ASP A 46 OD1 134.2 86.9 REMARK 620 4 GLU A 50 OE2 128.1 97.3 96.8 REMARK 620 5 HOH A 725 O 90.6 169.1 96.7 92.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 57 OE1 REMARK 620 2 GLU A 155 OE1 44.2 REMARK 620 3 GLU A 155 OE2 46.1 1.9 REMARK 620 4 HOH A 551 O 87.7 90.2 90.3 REMARK 620 5 HOH A 634 O 90.9 86.6 86.5 176.6 REMARK 620 6 HOH A 700 O 98.6 54.5 52.6 89.5 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 406 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 76 O REMARK 620 2 ALA A 78 O 99.3 REMARK 620 3 PHE A 81 O 103.3 83.8 REMARK 620 4 HOH A 641 O 91.1 165.7 84.2 REMARK 620 5 HOH A 650 O 168.3 91.5 82.5 79.2 REMARK 620 6 HOH A 781 O 94.4 87.3 161.3 101.9 81.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 118 OE2 REMARK 620 2 GLU A 220 OE1 51.5 REMARK 620 3 GLU A 220 OE2 49.5 2.1 REMARK 620 4 ASP A 250 OD1 55.1 5.4 6.8 REMARK 620 5 GLU A 296 OE1 50.2 5.4 5.1 5.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 204 OD1 REMARK 620 2 ASP A 204 OD2 51.4 REMARK 620 3 THR A 206 O 84.3 114.1 REMARK 620 4 THR A 206 OG1 77.6 124.5 75.3 REMARK 620 5 HOH A 624 O 104.8 75.7 72.0 146.7 REMARK 620 6 HOH A 702 O 83.1 80.4 147.2 72.5 140.7 REMARK 620 7 HOH A 708 O 151.2 156.8 75.1 77.9 87.9 103.5 REMARK 620 8 HOH A 783 O 130.3 81.4 135.7 131.6 72.5 73.3 77.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 503 O REMARK 620 2 HOH A 582 O 77.4 REMARK 620 3 HOH A 754 O 79.1 80.8 REMARK 620 4 HOH A 809 O 102.9 177.9 101.3 REMARK 620 5 HOH A 819 O 66.1 101.2 143.5 77.2 REMARK 620 6 HOH A 908 O 166.7 94.1 89.4 85.9 126.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ZNO RELATED DB: PDB REMARK 900 5ZNO CONTAINS THE SAME PROTEIN COMPLEXED WITH CA(2+) REMARK 900 RELATED ID: 5ZRR RELATED DB: PDB REMARK 900 RELATED ID: 5ZRS RELATED DB: PDB DBREF 5ZRQ A 45 304 UNP W0TJ64 W0TJ64_9PSEU 45 304 SEQADV 5ZRQ GLY A 43 UNP W0TJ64 EXPRESSION TAG SEQADV 5ZRQ PRO A 44 UNP W0TJ64 EXPRESSION TAG SEQADV 5ZRQ ALA A 176 UNP W0TJ64 SER 176 ENGINEERED MUTATION SEQADV 5ZRQ PRO A 226 UNP W0TJ64 SER 226 ENGINEERED MUTATION SEQADV 5ZRQ SER A 228 UNP W0TJ64 ARG 228 ENGINEERED MUTATION SEQADV 5ZRQ LYS A 305 UNP W0TJ64 EXPRESSION TAG SEQADV 5ZRQ LEU A 306 UNP W0TJ64 EXPRESSION TAG SEQADV 5ZRQ ASN A 307 UNP W0TJ64 EXPRESSION TAG SEQRES 1 A 265 GLY PRO GLN ASP ASN PRO TYR GLU ARG GLY PRO ASP PRO SEQRES 2 A 265 THR GLU ASP SER ILE GLU ALA ILE ARG GLY PRO PHE SER SEQRES 3 A 265 VAL ALA THR GLU ARG VAL SER SER PHE ALA SER GLY PHE SEQRES 4 A 265 GLY GLY GLY THR ILE TYR TYR PRO ARG GLU THR ASP GLU SEQRES 5 A 265 GLY THR PHE GLY ALA VAL ALA VAL ALA PRO GLY PHE THR SEQRES 6 A 265 ALA SER GLN GLY SER MET SER TRP TYR GLY GLU ARG VAL SEQRES 7 A 265 ALA SER GLN GLY PHE ILE VAL PHE THR ILE ASP THR ASN SEQRES 8 A 265 THR ARG LEU ASP GLN PRO GLY GLN ARG GLY ARG GLN LEU SEQRES 9 A 265 LEU ALA ALA LEU ASP TYR LEU VAL GLU ARG SER ASP ARG SEQRES 10 A 265 LYS VAL ARG GLU ARG LEU ASP PRO ASN ARG LEU ALA VAL SEQRES 11 A 265 MET GLY HIS ALA MET GLY GLY GLY GLY SER LEU GLU ALA SEQRES 12 A 265 THR VAL MHO ARG PRO SER LEU LYS ALA SER ILE PRO LEU SEQRES 13 A 265 THR PRO TRP ASN LEU ASP LYS THR TRP GLY GLN VAL GLN SEQRES 14 A 265 VAL PRO THR PHE ILE ILE GLY ALA GLU LEU ASP THR ILE SEQRES 15 A 265 ALA PRO VAL SER THR HIS ALA LYS PRO PHE TYR GLU SER SEQRES 16 A 265 LEU PRO SER SER LEU PRO LYS ALA TYR MET GLU LEU ASP SEQRES 17 A 265 GLY ALA THR HIS PHE ALA PRO ASN ILE PRO ASN THR THR SEQRES 18 A 265 ILE ALA LYS TYR VAL ILE SER TRP LEU LYS ARG PHE VAL SEQRES 19 A 265 ASP GLU ASP THR ARG TYR SER GLN PHE LEU CYS PRO ASN SEQRES 20 A 265 PRO THR ASP ARG ALA ILE GLU GLU TYR ARG SER THR CYS SEQRES 21 A 265 PRO TYR LYS LEU ASN MODRES 5ZRQ MHO A 188 MET MODIFIED RESIDUE HET MHO A 188 9 HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN A 405 1 HET CA A 406 1 HET SO4 A 407 5 HET GOL A 408 6 HET GOL A 409 6 HET GOL A 410 6 HETNAM MHO S-OXYMETHIONINE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MHO C5 H11 N O3 S FORMUL 2 ZN 5(ZN 2+) FORMUL 7 CA CA 2+ FORMUL 8 SO4 O4 S 2- FORMUL 9 GOL 3(C3 H8 O3) FORMUL 12 HOH *441(H2 O) HELIX 1 AA1 GLY A 43 ASN A 47 5 5 HELIX 2 AA2 THR A 56 ALA A 62 1 7 HELIX 3 AA3 SER A 109 SER A 112 5 4 HELIX 4 AA4 MET A 113 SER A 122 1 10 HELIX 5 AA5 GLN A 138 ARG A 156 1 19 HELIX 6 AA6 ASP A 158 GLU A 163 1 6 HELIX 7 AA7 ALA A 176 ARG A 189 1 14 HELIX 8 AA8 HIS A 230 LEU A 238 1 9 HELIX 9 AA9 PHE A 255 ILE A 259 5 5 HELIX 10 AB1 ASN A 261 ASP A 277 1 17 HELIX 11 AB2 ASP A 279 ARG A 281 5 3 HELIX 12 AB3 TYR A 282 CYS A 287 1 6 SHEET 1 AA1 6 VAL A 69 VAL A 74 0 SHEET 2 AA1 6 GLY A 84 PRO A 89 -1 O GLY A 84 N VAL A 74 SHEET 3 AA1 6 ILE A 126 ILE A 130 -1 O VAL A 127 N TYR A 87 SHEET 4 AA1 6 PHE A 97 ALA A 103 1 N VAL A 102 O PHE A 128 SHEET 5 AA1 6 LEU A 165 HIS A 175 1 O ASP A 166 N PHE A 97 SHEET 6 AA1 6 ALA A 194 LEU A 198 1 O LEU A 198 N GLY A 174 SHEET 1 AA2 3 THR A 214 ALA A 219 0 SHEET 2 AA2 3 LYS A 244 LEU A 249 1 O LEU A 249 N GLY A 218 SHEET 3 AA2 3 ILE A 295 SER A 300 -1 O GLU A 297 N GLU A 248 SSBOND 1 CYS A 287 CYS A 302 1555 1555 2.04 LINK C VAL A 187 N MHO A 188 1555 1555 1.32 LINK C MHO A 188 N ARG A 189 1555 1555 1.33 LINK N GLY A 43 ZN ZN A 403 1555 1555 2.04 LINK O GLY A 43 ZN ZN A 403 1555 1555 2.22 LINK OD1 ASP A 46 ZN ZN A 403 1555 1555 1.92 LINK OE2 GLU A 50 ZN ZN A 403 1555 1555 1.96 LINK OE1AGLU A 57 ZN ZN A 404 1555 1555 1.94 LINK O SER A 76 CA CA A 406 1555 1555 2.31 LINK O ALA A 78 CA CA A 406 1555 1555 2.31 LINK O PHE A 81 CA CA A 406 1555 1555 2.33 LINK OE2 GLU A 118 ZN ZN A 401 1555 3455 1.90 LINK OE1 GLU A 155 ZN ZN A 404 1555 2454 2.06 LINK OE2 GLU A 155 ZN ZN A 404 1555 2454 2.17 LINK OD1 ASP A 204 ZN ZN A 402 1555 1555 2.39 LINK OD2 ASP A 204 ZN ZN A 402 1555 1555 2.62 LINK O THR A 206 ZN ZN A 402 1555 1555 2.35 LINK OG1 THR A 206 ZN ZN A 402 1555 1555 2.44 LINK OE1 GLU A 220 ZN ZN A 401 1555 1555 1.97 LINK OE2 GLU A 220 ZN ZN A 401 1555 1555 2.64 LINK OD1 ASP A 250 ZN ZN A 401 1555 1555 1.98 LINK OE1 GLU A 296 ZN ZN A 401 1555 1555 1.96 LINK ZN ZN A 402 O HOH A 624 1555 1555 2.38 LINK ZN ZN A 402 O HOH A 702 1555 1555 2.47 LINK ZN ZN A 402 O HOH A 708 1555 1555 2.42 LINK ZN ZN A 402 O HOH A 783 1555 1555 2.49 LINK ZN ZN A 403 O HOH A 725 1555 1555 2.12 LINK ZN ZN A 404 O HOH A 551 1555 1555 2.13 LINK ZN ZN A 404 O HOH A 634 1555 1555 2.13 LINK ZN ZN A 404 O HOH A 700 1555 1555 1.97 LINK ZN ZN A 405 O HOH A 503 1555 1555 1.99 LINK ZN ZN A 405 O HOH A 582 1555 1555 2.19 LINK ZN ZN A 405 O HOH A 754 1555 1555 2.33 LINK ZN ZN A 405 O HOH A 809 1555 2455 2.12 LINK ZN ZN A 405 O HOH A 819 1555 2455 1.93 LINK ZN ZN A 405 O HOH A 908 1555 1555 2.30 LINK CA CA A 406 O HOH A 641 1555 1555 2.42 LINK CA CA A 406 O HOH A 650 1555 1555 2.58 LINK CA CA A 406 O HOH A 781 1555 1555 2.48 CISPEP 1 CYS A 287 PRO A 288 0 -3.35 CISPEP 2 CYS A 302 PRO A 303 0 -1.14 SITE 1 AC1 4 GLU A 118 GLU A 220 ASP A 250 GLU A 296 SITE 1 AC2 6 ASP A 204 THR A 206 HOH A 624 HOH A 702 SITE 2 AC2 6 HOH A 708 HOH A 783 SITE 1 AC3 4 GLY A 43 ASP A 46 GLU A 50 HOH A 725 SITE 1 AC4 5 GLU A 57 GLU A 155 HOH A 551 HOH A 634 SITE 2 AC4 5 HOH A 700 SITE 1 AC5 6 HOH A 503 HOH A 582 HOH A 754 HOH A 809 SITE 2 AC5 6 HOH A 819 HOH A 908 SITE 1 AC6 6 SER A 76 ALA A 78 PHE A 81 HOH A 641 SITE 2 AC6 6 HOH A 650 HOH A 781 SITE 1 AC7 8 GLU A 155 ASP A 292 ARG A 293 HOH A 535 SITE 2 AC7 8 HOH A 551 HOH A 652 HOH A 754 HOH A 809 SITE 1 AC8 7 GLN A 138 GLY A 140 GLN A 141 ARG A 144 SITE 2 AC8 7 SER A 241 HOH A 684 HOH A 843 SITE 1 AC9 6 GLY A 52 PHE A 67 GLU A 91 ASP A 93 SITE 2 AC9 6 GLU A 94 HOH A 538 SITE 1 AD1 9 SER A 59 PRO A 66 HOH A 506 HOH A 510 SITE 2 AD1 9 HOH A 669 HOH A 763 HOH A 799 HOH A 855 SITE 3 AD1 9 HOH A 939 CRYST1 50.196 63.243 78.675 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019922 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012711 0.00000