HEADER PROTEIN BINDING 25-APR-18 5ZRY TITLE CRYSTAL STRUCTURE OF EPHA6/ODIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANKYRIN REPEAT AND SAM DOMAIN-CONTAINING PROTEIN 1A,EPHRIN COMPND 3 TYPE-A RECEPTOR 6; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: ODIN,EPH HOMOLOGY KINASE 2,EHK-2; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: ODIN SAM1 - EPHA6 SAM FUSION PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ANKS1A, ANKS1, KIAA0229, ODIN, EPHA6, EHK-2, EHK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SAM DOMAIN, HETERODIMER, SIGNALING PROTEIN, CELL SIGNALING, RECEPTOR, KEYWDS 2 TRANSMEMBRANE, TYROSINE-PROTEIN KINASE, CELL ADHESION, PROTEIN KEYWDS 3 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG,Y.SHANG,J.LI,W.CHEN,G.LI,J.WAN,W.LIU,M.ZHANG REVDAT 2 22-NOV-23 5ZRY 1 REMARK REVDAT 1 30-MAY-18 5ZRY 0 JRNL AUTH Y.WANG,Y.SHANG,J.LI,W.CHEN,G.LI,J.WAN,W.LIU,M.ZHANG JRNL TITL SPECIFIC EPH RECEPTOR-CYTOPLASMIC EFFECTOR SIGNALING JRNL TITL 2 MEDIATED BY SAM-SAM DOMAIN INTERACTIONS. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 29749928 JRNL DOI 10.7554/ELIFE.35677 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 77297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1947 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5441 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2607 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 383 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.304 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2876 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2707 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3913 ; 1.523 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6307 ; 1.038 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 381 ; 5.431 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;37.056 ;23.435 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 532 ;12.621 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.412 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 436 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3188 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 603 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5583 ; 1.544 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 186 ;33.008 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5709 ;13.176 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5640 84.6080 105.8670 REMARK 3 T TENSOR REMARK 3 T11: 0.0761 T22: 0.0015 REMARK 3 T33: 0.0176 T12: 0.0017 REMARK 3 T13: 0.0024 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.0198 L22: 0.3709 REMARK 3 L33: 0.0777 L12: -0.0066 REMARK 3 L13: -0.0080 L23: 0.0691 REMARK 3 S TENSOR REMARK 3 S11: 0.0059 S12: 0.0005 S13: 0.0009 REMARK 3 S21: 0.0169 S22: -0.0070 S23: 0.0156 REMARK 3 S31: -0.0257 S32: -0.0104 S33: 0.0011 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 35 B 195 REMARK 3 ORIGIN FOR THE GROUP (A): 44.4750 86.6620 131.0430 REMARK 3 T TENSOR REMARK 3 T11: 0.0716 T22: 0.0014 REMARK 3 T33: 0.0184 T12: -0.0064 REMARK 3 T13: 0.0077 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.0900 L22: 0.3298 REMARK 3 L33: 0.0804 L12: -0.0919 REMARK 3 L13: 0.0292 L23: 0.0989 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: 0.0058 S13: 0.0022 REMARK 3 S21: 0.0015 S22: -0.0011 S23: -0.0107 REMARK 3 S31: -0.0017 S32: 0.0046 S33: -0.0020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5ZRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300006785. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79398 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.90300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KKA, 2LMR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES SODIUM PH 7.5, 1.5M LITHIUM REMARK 280 SULFATE MONOHYDRATE, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.49250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.19150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.52100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.19150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.49250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.52100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS HETERODIMER OF TWO SAM DOMAINS. REMARK 300 HOWEVER, TWO DOMAINS WERE EXPRESSED AS A FUSED SINGLE CHAIN PROTEIN REMARK 300 IN THIS STRUCTURE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 ILE A 5 REMARK 465 HIS A 6 REMARK 465 MET A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 GLY A 16 REMARK 465 LEU A 17 REMARK 465 GLU A 18 REMARK 465 VAL A 19 REMARK 465 LEU A 20 REMARK 465 PHE A 21 REMARK 465 GLN A 22 REMARK 465 GLY A 23 REMARK 465 PRO A 24 REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 GLU B 2 REMARK 465 GLY B 3 REMARK 465 ASP B 4 REMARK 465 ILE B 5 REMARK 465 HIS B 6 REMARK 465 MET B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 HIS B 11 REMARK 465 HIS B 12 REMARK 465 HIS B 13 REMARK 465 SER B 14 REMARK 465 SER B 15 REMARK 465 GLY B 16 REMARK 465 LEU B 17 REMARK 465 GLU B 18 REMARK 465 VAL B 19 REMARK 465 LEU B 20 REMARK 465 PHE B 21 REMARK 465 GLN B 22 REMARK 465 GLY B 23 REMARK 465 PRO B 24 REMARK 465 GLY B 25 REMARK 465 SER B 26 REMARK 465 ILE B 27 REMARK 465 SER B 28 REMARK 465 GLY B 29 REMARK 465 SER B 30 REMARK 465 ARG B 31 REMARK 465 THR B 32 REMARK 465 LEU B 33 REMARK 465 GLU B 34 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 GLN A 72 CG CD OE1 NE2 REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 ARG A 154 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 176 O2 GOL B 202 1.77 REMARK 500 ND2 ASN A 107 O HOH A 301 1.82 REMARK 500 O GLY A 105 O HOH A 301 1.89 REMARK 500 O1 TRS B 203 O HOH B 301 2.01 REMARK 500 O HOH B 301 O HOH B 461 2.01 REMARK 500 O HOH B 301 O HOH B 411 2.02 REMARK 500 O SER A 103 O HOH A 301 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C3 GOL B 202 O HOH A 417 2775 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 69 CG - SD - CE ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 122 157.73 71.18 REMARK 500 VAL B 68 -49.48 -130.08 REMARK 500 PHE B 122 158.08 74.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 65 SER A 66 -147.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 482 DISTANCE = 7.42 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 203 DBREF 5ZRY A 27 99 UNP P59672 ANS1A_MOUSE 707 779 DBREF 5ZRY A 117 195 UNP Q62413 EPHA6_MOUSE 957 1035 DBREF 5ZRY B 27 99 UNP P59672 ANS1A_MOUSE 707 779 DBREF 5ZRY B 117 195 UNP Q62413 EPHA6_MOUSE 957 1035 SEQADV 5ZRY GLU A 2 UNP P59672 EXPRESSION TAG SEQADV 5ZRY GLY A 3 UNP P59672 EXPRESSION TAG SEQADV 5ZRY ASP A 4 UNP P59672 EXPRESSION TAG SEQADV 5ZRY ILE A 5 UNP P59672 EXPRESSION TAG SEQADV 5ZRY HIS A 6 UNP P59672 EXPRESSION TAG SEQADV 5ZRY MET A 7 UNP P59672 EXPRESSION TAG SEQADV 5ZRY HIS A 8 UNP P59672 EXPRESSION TAG SEQADV 5ZRY HIS A 9 UNP P59672 EXPRESSION TAG SEQADV 5ZRY HIS A 10 UNP P59672 EXPRESSION TAG SEQADV 5ZRY HIS A 11 UNP P59672 EXPRESSION TAG SEQADV 5ZRY HIS A 12 UNP P59672 EXPRESSION TAG SEQADV 5ZRY HIS A 13 UNP P59672 EXPRESSION TAG SEQADV 5ZRY SER A 14 UNP P59672 EXPRESSION TAG SEQADV 5ZRY SER A 15 UNP P59672 EXPRESSION TAG SEQADV 5ZRY GLY A 16 UNP P59672 EXPRESSION TAG SEQADV 5ZRY LEU A 17 UNP P59672 EXPRESSION TAG SEQADV 5ZRY GLU A 18 UNP P59672 EXPRESSION TAG SEQADV 5ZRY VAL A 19 UNP P59672 EXPRESSION TAG SEQADV 5ZRY LEU A 20 UNP P59672 EXPRESSION TAG SEQADV 5ZRY PHE A 21 UNP P59672 EXPRESSION TAG SEQADV 5ZRY GLN A 22 UNP P59672 EXPRESSION TAG SEQADV 5ZRY GLY A 23 UNP P59672 EXPRESSION TAG SEQADV 5ZRY PRO A 24 UNP P59672 EXPRESSION TAG SEQADV 5ZRY GLY A 25 UNP P59672 EXPRESSION TAG SEQADV 5ZRY SER A 26 UNP P59672 EXPRESSION TAG SEQADV 5ZRY PRO A 100 UNP P59672 LINKER SEQADV 5ZRY SER A 101 UNP P59672 LINKER SEQADV 5ZRY GLY A 102 UNP P59672 LINKER SEQADV 5ZRY SER A 103 UNP P59672 LINKER SEQADV 5ZRY SER A 104 UNP P59672 LINKER SEQADV 5ZRY GLY A 105 UNP P59672 LINKER SEQADV 5ZRY GLU A 106 UNP P59672 LINKER SEQADV 5ZRY ASN A 107 UNP P59672 LINKER SEQADV 5ZRY LEU A 108 UNP P59672 LINKER SEQADV 5ZRY TYR A 109 UNP P59672 LINKER SEQADV 5ZRY PHE A 110 UNP P59672 LINKER SEQADV 5ZRY GLN A 111 UNP P59672 LINKER SEQADV 5ZRY SER A 112 UNP P59672 LINKER SEQADV 5ZRY GLY A 113 UNP P59672 LINKER SEQADV 5ZRY SER A 114 UNP P59672 LINKER SEQADV 5ZRY SER A 115 UNP P59672 LINKER SEQADV 5ZRY GLY A 116 UNP P59672 LINKER SEQADV 5ZRY GLU B 2 UNP P59672 EXPRESSION TAG SEQADV 5ZRY GLY B 3 UNP P59672 EXPRESSION TAG SEQADV 5ZRY ASP B 4 UNP P59672 EXPRESSION TAG SEQADV 5ZRY ILE B 5 UNP P59672 EXPRESSION TAG SEQADV 5ZRY HIS B 6 UNP P59672 EXPRESSION TAG SEQADV 5ZRY MET B 7 UNP P59672 EXPRESSION TAG SEQADV 5ZRY HIS B 8 UNP P59672 EXPRESSION TAG SEQADV 5ZRY HIS B 9 UNP P59672 EXPRESSION TAG SEQADV 5ZRY HIS B 10 UNP P59672 EXPRESSION TAG SEQADV 5ZRY HIS B 11 UNP P59672 EXPRESSION TAG SEQADV 5ZRY HIS B 12 UNP P59672 EXPRESSION TAG SEQADV 5ZRY HIS B 13 UNP P59672 EXPRESSION TAG SEQADV 5ZRY SER B 14 UNP P59672 EXPRESSION TAG SEQADV 5ZRY SER B 15 UNP P59672 EXPRESSION TAG SEQADV 5ZRY GLY B 16 UNP P59672 EXPRESSION TAG SEQADV 5ZRY LEU B 17 UNP P59672 EXPRESSION TAG SEQADV 5ZRY GLU B 18 UNP P59672 EXPRESSION TAG SEQADV 5ZRY VAL B 19 UNP P59672 EXPRESSION TAG SEQADV 5ZRY LEU B 20 UNP P59672 EXPRESSION TAG SEQADV 5ZRY PHE B 21 UNP P59672 EXPRESSION TAG SEQADV 5ZRY GLN B 22 UNP P59672 EXPRESSION TAG SEQADV 5ZRY GLY B 23 UNP P59672 EXPRESSION TAG SEQADV 5ZRY PRO B 24 UNP P59672 EXPRESSION TAG SEQADV 5ZRY GLY B 25 UNP P59672 EXPRESSION TAG SEQADV 5ZRY SER B 26 UNP P59672 EXPRESSION TAG SEQADV 5ZRY PRO B 100 UNP P59672 LINKER SEQADV 5ZRY SER B 101 UNP P59672 LINKER SEQADV 5ZRY GLY B 102 UNP P59672 LINKER SEQADV 5ZRY SER B 103 UNP P59672 LINKER SEQADV 5ZRY SER B 104 UNP P59672 LINKER SEQADV 5ZRY GLY B 105 UNP P59672 LINKER SEQADV 5ZRY GLU B 106 UNP P59672 LINKER SEQADV 5ZRY ASN B 107 UNP P59672 LINKER SEQADV 5ZRY LEU B 108 UNP P59672 LINKER SEQADV 5ZRY TYR B 109 UNP P59672 LINKER SEQADV 5ZRY PHE B 110 UNP P59672 LINKER SEQADV 5ZRY GLN B 111 UNP P59672 LINKER SEQADV 5ZRY SER B 112 UNP P59672 LINKER SEQADV 5ZRY GLY B 113 UNP P59672 LINKER SEQADV 5ZRY SER B 114 UNP P59672 LINKER SEQADV 5ZRY SER B 115 UNP P59672 LINKER SEQADV 5ZRY GLY B 116 UNP P59672 LINKER SEQRES 1 A 194 GLU GLY ASP ILE HIS MET HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 194 SER GLY LEU GLU VAL LEU PHE GLN GLY PRO GLY SER ILE SEQRES 3 A 194 SER GLY SER ARG THR LEU GLU GLN SER VAL GLY GLU TRP SEQRES 4 A 194 LEU GLU SER ILE GLY LEU GLN GLN TYR GLU SER LYS LEU SEQRES 5 A 194 LEU LEU ASN GLY PHE ASP ASP VAL ARG PHE LEU GLY SER SEQRES 6 A 194 ASN VAL MET GLU GLU GLN ASP LEU ARG GLU ILE GLY ILE SEQRES 7 A 194 SER ASP PRO GLN HIS ARG ARG LYS LEU LEU GLN ALA ALA SEQRES 8 A 194 ARG SER LEU PRO LYS VAL LYS PRO SER GLY SER SER GLY SEQRES 9 A 194 GLU ASN LEU TYR PHE GLN SER GLY SER SER GLY PRO GLU SEQRES 10 A 194 TYR PRO LEU PHE VAL THR VAL GLY ASP TRP LEU ASP SER SEQRES 11 A 194 ILE LYS MET GLY GLN TYR LYS SER ASN PHE MET ALA ALA SEQRES 12 A 194 GLY PHE THR THR PHE ASP LEU ILE SER ARG MET SER ILE SEQRES 13 A 194 ASP ASP ILE ARG ARG ILE GLY VAL ILE LEU ILE GLY HIS SEQRES 14 A 194 GLN ARG ARG ILE VAL SER SER ILE GLN THR LEU ARG LEU SEQRES 15 A 194 HIS MET MET HIS ILE GLN GLU LYS GLY PHE HIS VAL SEQRES 1 B 194 GLU GLY ASP ILE HIS MET HIS HIS HIS HIS HIS HIS SER SEQRES 2 B 194 SER GLY LEU GLU VAL LEU PHE GLN GLY PRO GLY SER ILE SEQRES 3 B 194 SER GLY SER ARG THR LEU GLU GLN SER VAL GLY GLU TRP SEQRES 4 B 194 LEU GLU SER ILE GLY LEU GLN GLN TYR GLU SER LYS LEU SEQRES 5 B 194 LEU LEU ASN GLY PHE ASP ASP VAL ARG PHE LEU GLY SER SEQRES 6 B 194 ASN VAL MET GLU GLU GLN ASP LEU ARG GLU ILE GLY ILE SEQRES 7 B 194 SER ASP PRO GLN HIS ARG ARG LYS LEU LEU GLN ALA ALA SEQRES 8 B 194 ARG SER LEU PRO LYS VAL LYS PRO SER GLY SER SER GLY SEQRES 9 B 194 GLU ASN LEU TYR PHE GLN SER GLY SER SER GLY PRO GLU SEQRES 10 B 194 TYR PRO LEU PHE VAL THR VAL GLY ASP TRP LEU ASP SER SEQRES 11 B 194 ILE LYS MET GLY GLN TYR LYS SER ASN PHE MET ALA ALA SEQRES 12 B 194 GLY PHE THR THR PHE ASP LEU ILE SER ARG MET SER ILE SEQRES 13 B 194 ASP ASP ILE ARG ARG ILE GLY VAL ILE LEU ILE GLY HIS SEQRES 14 B 194 GLN ARG ARG ILE VAL SER SER ILE GLN THR LEU ARG LEU SEQRES 15 B 194 HIS MET MET HIS ILE GLN GLU LYS GLY PHE HIS VAL HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET GOL A 205 6 HET EPE A 206 15 HET SO4 B 201 5 HET GOL B 202 6 HET TRS B 203 8 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EPE HEPES HETSYN TRS TRIS BUFFER FORMUL 3 SO4 5(O4 S 2-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 8 EPE C8 H18 N2 O4 S FORMUL 11 TRS C4 H12 N O3 1+ FORMUL 12 HOH *383(H2 O) HELIX 1 AA1 SER A 36 ILE A 44 1 9 HELIX 2 AA2 GLY A 45 GLN A 48 5 4 HELIX 3 AA3 TYR A 49 ASN A 56 1 8 HELIX 4 AA4 ASP A 60 LEU A 64 5 5 HELIX 5 AA5 GLU A 70 ILE A 77 1 8 HELIX 6 AA6 ASP A 81 SER A 94 1 14 HELIX 7 AA7 THR A 124 ILE A 132 1 9 HELIX 8 AA8 LYS A 133 GLN A 136 5 4 HELIX 9 AA9 TYR A 137 ALA A 144 1 8 HELIX 10 AB1 THR A 148 SER A 153 1 6 HELIX 11 AB2 SER A 156 ILE A 163 1 8 HELIX 12 AB3 LEU A 167 GLY A 192 1 26 HELIX 13 AB4 SER B 36 ILE B 44 1 9 HELIX 14 AB5 GLY B 45 GLN B 48 5 4 HELIX 15 AB6 TYR B 49 ASN B 56 1 8 HELIX 16 AB7 GLU B 70 ILE B 77 1 8 HELIX 17 AB8 ASP B 81 SER B 94 1 14 HELIX 18 AB9 THR B 124 ILE B 132 1 9 HELIX 19 AC1 LYS B 133 GLN B 136 5 4 HELIX 20 AC2 TYR B 137 ALA B 144 1 8 HELIX 21 AC3 THR B 148 SER B 153 1 6 HELIX 22 AC4 SER B 156 ILE B 163 1 8 HELIX 23 AC5 LEU B 167 GLY B 192 1 26 SHEET 1 AA1 2 TYR A 109 GLN A 111 0 SHEET 2 AA1 2 GLU A 118 PRO A 120 -1 O TYR A 119 N PHE A 110 SHEET 1 AA2 2 TYR B 109 PHE B 110 0 SHEET 2 AA2 2 TYR B 119 PRO B 120 -1 O TYR B 119 N PHE B 110 SITE 1 AC1 6 ARG A 161 ARG A 162 GLN B 179 HOH B 304 SITE 2 AC1 6 HOH B 382 HOH B 480 SITE 1 AC2 5 GLN A 83 ARG A 86 SER A 114 SER B 104 SITE 2 AC2 5 GLY B 105 SITE 1 AC3 4 MET A 185 HIS A 194 HOH A 313 MET B 185 SITE 1 AC4 6 SER A 28 GLY A 29 SER A 153 GLN A 179 SITE 2 AC4 6 ARG A 182 HOH A 303 SITE 1 AC5 7 THR A 124 GLY A 126 ASP A 127 LYS A 138 SITE 2 AC5 7 HOH A 323 HOH A 372 HOH B 479 SITE 1 AC6 11 GLN A 83 SER A 112 SER A 115 GLY A 116 SITE 2 AC6 11 HOH A 315 HOH A 331 HOH A 394 LEU B 55 SITE 3 AC6 11 ASN B 56 GLU B 106 ILE B 166 SITE 1 AC7 6 ARG B 86 LYS B 87 GLN B 90 ARG B 161 SITE 2 AC7 6 ARG B 162 HOH B 391 SITE 1 AC8 7 ARG A 162 ILE A 163 HOH A 417 SER B 176 SITE 2 AC8 7 GLN B 179 THR B 180 HOH B 317 SITE 1 AC9 12 LYS A 87 LYS A 191 LYS B 52 GLU B 76 SITE 2 AC9 12 ILE B 77 GLY B 78 HOH B 301 HOH B 316 SITE 3 AC9 12 HOH B 339 HOH B 344 HOH B 399 HOH B 418 CRYST1 38.985 85.042 98.383 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025651 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011759 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010164 0.00000