HEADER RNA BINDING PROTEIN 30-APR-18 5ZSY TITLE RBM10-RRM2 DOMAIN AND ITS LUNG CANCER RELATED MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 10; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RBM10 RRM2 DOMAIN; COMPND 5 SYNONYM: G PATCH DOMAIN-CONTAINING PROTEIN 9,RNA-BINDING MOTIF COMPND 6 PROTEIN 10,RNA-BINDING PROTEIN S1-1,S1-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM10, DXS8237E, GPATC9, GPATCH9, KIAA0122; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CLASSICAL FOLDING AND BINDING MODE, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.QIN REVDAT 2 14-JUN-23 5ZSY 1 REMARK REVDAT 1 12-JUN-19 5ZSY 0 JRNL AUTH H.QIN JRNL TITL STRUCTURAL, DYNAMICS, AND RNA BINDING COMPARISON BETWEEN JRNL TITL 2 RBM10-RRM2 DOMAIN AND ITS LUNG CANCER RELATED MUTATION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPAL REMARK 3 AUTHORS : LUGINBUHL, GUNTERT, BILLETER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZSY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300007603. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20MM SODIUM PHOSPHATE, 50MM REMARK 210 SODIUM CHLORIDE REMARK 210 PRESSURE : 1 PA REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 13C; U-100% 15N] REMARK 210 RBM10 RRM2[V354DEL], 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4D APSY-HACANH; 5D APSY REMARK 210 -CBCACONH; 5D APSY-HACACONH; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UNIO-ASCAN, CYANA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 4 94.06 66.03 REMARK 500 1 SER A 31 -85.56 -84.90 REMARK 500 1 SER A 32 -50.63 -170.26 REMARK 500 1 HIS A 70 152.61 -46.45 REMARK 500 1 ASP A 76 -22.80 -166.72 REMARK 500 1 ALA A 85 70.79 -117.71 REMARK 500 2 MET A 3 30.35 74.17 REMARK 500 2 THR A 16 -164.40 -124.85 REMARK 500 2 ALA A 23 -25.40 -141.30 REMARK 500 2 ALA A 25 53.85 -116.48 REMARK 500 2 SER A 31 37.24 -85.45 REMARK 500 2 SER A 32 -64.01 60.19 REMARK 500 2 ASP A 40 -174.77 -63.69 REMARK 500 2 GLN A 44 -13.41 65.34 REMARK 500 2 LEU A 45 -179.08 -65.39 REMARK 500 2 ALA A 68 -30.19 -153.57 REMARK 500 2 ASP A 76 24.32 -170.63 REMARK 500 3 HIS A 2 -64.53 -154.79 REMARK 500 3 ASP A 4 86.31 71.65 REMARK 500 3 LEU A 24 42.48 -102.56 REMARK 500 3 ALA A 25 54.14 -119.68 REMARK 500 3 TYR A 27 -59.36 -135.46 REMARK 500 3 ASP A 76 30.25 174.67 REMARK 500 4 HIS A 2 -61.54 -125.24 REMARK 500 4 ASP A 4 83.54 46.44 REMARK 500 4 THR A 16 -86.98 -122.66 REMARK 500 4 MET A 17 -37.30 -163.62 REMARK 500 4 ALA A 23 12.68 -141.44 REMARK 500 4 TYR A 27 -66.86 -137.37 REMARK 500 4 SER A 32 -81.20 58.21 REMARK 500 4 ALA A 68 13.90 -144.16 REMARK 500 4 ASP A 76 32.94 -168.67 REMARK 500 4 LYS A 86 69.92 -101.13 REMARK 500 5 MET A 3 23.24 -73.46 REMARK 500 5 ASP A 4 84.72 -173.29 REMARK 500 5 GLN A 44 13.45 57.38 REMARK 500 5 ASP A 76 37.07 -168.54 REMARK 500 5 LYS A 86 93.19 -61.56 REMARK 500 6 ASP A 4 85.97 59.53 REMARK 500 6 TYR A 27 -51.99 -122.09 REMARK 500 6 SER A 32 -49.43 61.65 REMARK 500 6 ARG A 36 86.58 -66.46 REMARK 500 6 GLN A 42 -51.43 -127.75 REMARK 500 6 ALA A 68 -14.43 -154.38 REMARK 500 6 LEU A 69 -162.70 -68.47 REMARK 500 6 ASP A 76 24.65 -167.70 REMARK 500 7 ASP A 4 84.08 43.88 REMARK 500 7 THR A 16 -57.82 -123.56 REMARK 500 7 MET A 17 -56.38 -157.71 REMARK 500 7 ILE A 20 -48.69 -137.38 REMARK 500 REMARK 500 THIS ENTRY HAS 185 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 4 THR A 5 2 147.67 REMARK 500 GLY A 87 SER A 88 10 145.43 REMARK 500 SER A 15 THR A 16 15 144.19 REMARK 500 HIS A 2 MET A 3 20 148.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 27 0.08 SIDE CHAIN REMARK 500 2 ARG A 9 0.09 SIDE CHAIN REMARK 500 7 TYR A 27 0.09 SIDE CHAIN REMARK 500 7 ARG A 36 0.09 SIDE CHAIN REMARK 500 9 TYR A 27 0.08 SIDE CHAIN REMARK 500 10 ARG A 9 0.11 SIDE CHAIN REMARK 500 14 TYR A 27 0.08 SIDE CHAIN REMARK 500 16 ASP A 76 0.07 SIDE CHAIN REMARK 500 17 ARG A 36 0.08 SIDE CHAIN REMARK 500 19 ARG A 47 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36184 RELATED DB: BMRB REMARK 900 RBM10-RRM2 DOMAIN AND ITS LUNG CANCER RELATED MUTANT REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE OF THE PROTEIN IS BASED ON ISOFORM 4 OF DATABASE P98175 REMARK 999 (RBM10_HUMAN). DBREF 5ZSY A 4 88 UNP P98175 RBM10_HUMAN 223 307 SEQADV 5ZSY GLY A 1 UNP P98175 EXPRESSION TAG SEQADV 5ZSY HIS A 2 UNP P98175 EXPRESSION TAG SEQADV 5ZSY MET A 3 UNP P98175 EXPRESSION TAG SEQRES 1 A 88 GLY HIS MET ASP THR ILE ILE LEU ARG ASN LEU ASN PRO SEQRES 2 A 88 HIS SER THR MET ASP SER ILE LEU GLY ALA LEU ALA PRO SEQRES 3 A 88 TYR ALA VAL LEU SER SER SER ASN VAL ARG VAL ILE LYS SEQRES 4 A 88 ASP LYS GLN THR GLN LEU ASN ARG GLY PHE ALA PHE ILE SEQRES 5 A 88 GLN LEU SER THR ILE GLU ALA ALA GLN LEU LEU GLN ILE SEQRES 6 A 88 LEU GLN ALA LEU HIS PRO PRO LEU THR ILE ASP GLY LYS SEQRES 7 A 88 THR ILE ASN VAL GLU PHE ALA LYS GLY SER HELIX 1 AA1 MET A 17 GLY A 22 1 6 HELIX 2 AA2 SER A 55 GLN A 67 1 13 SHEET 1 AA1 4 VAL A 35 ARG A 36 0 SHEET 2 AA1 4 ALA A 50 ILE A 52 -1 O PHE A 51 N ARG A 36 SHEET 3 AA1 4 ILE A 6 ARG A 9 -1 N LEU A 8 O ALA A 50 SHEET 4 AA1 4 ASN A 81 PHE A 84 -1 O GLU A 83 N ILE A 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1