HEADER HYDROLASE 08-MAY-18 5ZUM TITLE STRUCTURE OF DIPEPTIDYL-PEPTIDASE III FROM CORALLOCOCCUS SP. STRAIN TITLE 2 EGB COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPEPTIDYL-PEPTIDASE III; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORALLOCOCCUS SP. EGB; SOURCE 3 ORGANISM_TAXID: 1521117; SOURCE 4 STRAIN: EGB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLOPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHANG,Y.J.DUAN,Z.K.LI,W.D.LIU,Y.HUANG,Z.L.CUI REVDAT 1 12-JUN-19 5ZUM 0 JRNL AUTH H.ZHANG,Y.J.DUAN,Z.K.LI,W.D.LIU,Y.HUANG,Z.L.CUI JRNL TITL STRUCTURE OF DIPEPTIDYL PEPTIDASE III FROM CORALLOCOCCUS SP. JRNL TITL 2 STRAIN EGB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 78400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4061 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5588 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 291 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8302 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 934 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.359 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8473 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 8097 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11487 ; 1.515 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18796 ; 0.807 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1068 ; 6.194 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 368 ;37.358 ;24.484 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1410 ;16.445 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;18.673 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1299 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9395 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1649 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4278 ; 2.893 ; 2.195 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4277 ; 2.892 ; 2.194 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5344 ; 3.522 ; 3.276 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5345 ; 3.523 ; 3.277 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4195 ; 4.570 ; 2.654 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4196 ; 4.570 ; 2.655 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6144 ; 6.324 ; 3.779 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10079 ; 7.391 ;28.228 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9839 ; 7.344 ;27.813 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300006050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.59 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82472 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 9.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24%(W/V) PEG 3350, 0.1M SODIUM REMARK 280 CACODYLATE ACETATE TRIHYDRATE PH 4.59, 0.02M TCEP HYDROCHIORIDE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.07050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.14700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.92500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 114.14700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.07050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.92500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 561 REMARK 465 PHE A 562 REMARK 465 GLY A 563 REMARK 465 ALA A 564 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B 182 C GLU B 183 N 0.204 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 244 -73.38 -130.29 REMARK 500 ALA A 302 56.89 -148.16 REMARK 500 ASN A 317 78.24 -150.05 REMARK 500 VAL A 355 -57.43 -125.00 REMARK 500 HIS A 393 -68.80 -137.58 REMARK 500 GLN A 409 -133.70 53.78 REMARK 500 ASP A 487 9.58 -69.28 REMARK 500 ASP A 547 -150.09 -154.64 REMARK 500 TYR B 244 -70.98 -133.90 REMARK 500 ALA B 302 54.56 -142.74 REMARK 500 TYR B 311 141.41 -170.21 REMARK 500 VAL B 355 -56.19 -123.93 REMARK 500 HIS B 393 -68.32 -139.46 REMARK 500 THR B 402 -159.30 -148.55 REMARK 500 GLN B 409 -132.90 54.80 REMARK 500 ASP B 547 -151.49 -160.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1215 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH A1216 DISTANCE = 7.60 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 384 NE2 REMARK 620 2 HIS A 388 NE2 103.7 REMARK 620 3 GLU A 417 OE1 92.0 110.1 REMARK 620 4 HOH A1089 O 113.0 120.0 114.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 384 NE2 REMARK 620 2 HIS B 388 NE2 103.6 REMARK 620 3 GLU B 417 OE2 98.7 117.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 601 DBREF 5ZUM A 28 564 PDB 5ZUM 5ZUM 28 564 DBREF 5ZUM B 28 564 PDB 5ZUM 5ZUM 28 564 SEQRES 1 A 537 ARG LEU PRO ASP ALA PRO THR LEU LYS ARG MSE THR ALA SEQRES 2 A 537 ARG PHE ALA PRO VAL ASP VAL LYS VAL ASP VAL SER LYS SEQRES 3 A 537 LEU PRO ASP ALA GLU LYS ARG ALA LEU ALA LYS ILE LEU SEQRES 4 A 537 GLN ALA ALA LYS ILE MSE ASP PRO LEU PHE LEU SER GLN SEQRES 5 A 537 ALA TRP ALA GLY ASN PRO THR LEU LEU LEU ASP LEU VAL SEQRES 6 A 537 GLU ASP THR THR PRO LEU GLY LYS GLU ARG LEU HIS ALA SEQRES 7 A 537 PHE LEU LEU ASN LYS GLY PRO TRP SER ARG LEU ASP GLU SEQRES 8 A 537 ALA LYS PRO PHE ILE PRO GLY VAL PRO PRO LYS PRO ASP SEQRES 9 A 537 GLU GLY ASN PHE TYR PRO ALA GLY ALA THR LYS ALA GLU SEQRES 10 A 537 VAL GLU ALA TRP VAL LYS SER LEU PRO GLU ALA GLN GLN SEQRES 11 A 537 HIS ALA ALA THR GLY PHE PHE THR THR VAL ARG LYS GLY SEQRES 12 A 537 PRO ASP GLY LYS PHE LEU THR VAL PRO TYR SER VAL GLU SEQRES 13 A 537 TYR GLN GLY GLU LEU GLY MSE ALA ALA LYS LEU LEU ARG SEQRES 14 A 537 GLU ALA ALA ALA LEU THR GLN GLN SER THR LEU LYS ARG SEQRES 15 A 537 PHE LEU GLU THR ARG ALA GLU ALA PHE LEU SER ASN ASP SEQRES 16 A 537 TYR TYR ALA SER GLU VAL ALA TRP MSE GLU LEU ASP ALA SEQRES 17 A 537 SER VAL GLU PRO THR ILE GLY PRO TYR GLU VAL TYR GLU SEQRES 18 A 537 ASP GLY TRP PHE ASN TYR LYS ALA ALA PHE GLU ALA PHE SEQRES 19 A 537 ILE GLY VAL ARG ASP GLU ALA GLU THR GLN LYS LEU ALA SEQRES 20 A 537 LYS PHE SER ALA GLU LEU GLN GLU LEU GLU ASN ASN LEU SEQRES 21 A 537 PRO ILE GLU PRO ALA LEU ARG ASN PRO LYS LEU GLY ALA SEQRES 22 A 537 LEU ALA PRO ILE ARG VAL ILE ASN SER LEU TYR SER SER SEQRES 23 A 537 GLY ASP GLY ASN ARG GLY VAL GLN THR ALA ALA TYR ASN SEQRES 24 A 537 LEU PRO ASN ASP GLU ARG VAL ALA ALA GLU LYS GLY THR SEQRES 25 A 537 LYS ARG VAL MSE LEU LYS ASN ILE GLN GLU ALA LYS PHE SEQRES 26 A 537 GLN ARG VAL LEU VAL PRO ILE ALA LYS VAL ALA LEU PRO SEQRES 27 A 537 ALA LYS ASP ARG LYS ASP VAL SER PHE ASP ALA PHE PHE SEQRES 28 A 537 THR HIS ILE LEU MSE HIS GLU LEU MSE HIS GLY LEU GLY SEQRES 29 A 537 PRO HIS ASN VAL THR VAL ALA GLY LYS GLN THR THR VAL SEQRES 30 A 537 ARG GLN ALA LEU GLN ALA SER SER SER ALA ILE GLU GLU SEQRES 31 A 537 ALA LYS ALA ASP ILE SER GLY LEU TRP ALA LEU GLN ARG SEQRES 32 A 537 LEU VAL ASP LYS GLY THR LEU ASP LYS GLU LEU GLN ARG SEQRES 33 A 537 THR MSE TYR THR THR PHE LEU ALA SER ALA PHE ARG SER SEQRES 34 A 537 ILE ARG PHE GLY ILE ASP GLU ALA HIS GLY LYS GLY ILE SEQRES 35 A 537 ALA LEU GLN LEU ASN HIS PHE LEU ASP THR GLY ALA VAL SEQRES 36 A 537 LYS VAL ASN ALA ASP GLY THR PHE GLU VAL VAL PRO ASP SEQRES 37 A 537 LYS MSE GLN ALA SER VAL THR SER LEU THR ASN GLN LEU SEQRES 38 A 537 MSE SER LEU GLN ALA LYS GLY ASP ARG ALA ALA ALA GLU SEQRES 39 A 537 GLU LEU LEU ALA LYS GLN GLY VAL VAL ARG PRO SER VAL SEQRES 40 A 537 GLN LYS VAL LEU GLU LYS LEU LYS ASN VAL PRO VAL ASP SEQRES 41 A 537 ILE GLU PRO ARG TYR VAL THR ALA GLU SER LEU VAL LYS SEQRES 42 A 537 ASP PHE GLY ALA SEQRES 1 B 537 ARG LEU PRO ASP ALA PRO THR LEU LYS ARG MSE THR ALA SEQRES 2 B 537 ARG PHE ALA PRO VAL ASP VAL LYS VAL ASP VAL SER LYS SEQRES 3 B 537 LEU PRO ASP ALA GLU LYS ARG ALA LEU ALA LYS ILE LEU SEQRES 4 B 537 GLN ALA ALA LYS ILE MSE ASP PRO LEU PHE LEU SER GLN SEQRES 5 B 537 ALA TRP ALA GLY ASN PRO THR LEU LEU LEU ASP LEU VAL SEQRES 6 B 537 GLU ASP THR THR PRO LEU GLY LYS GLU ARG LEU HIS ALA SEQRES 7 B 537 PHE LEU LEU ASN LYS GLY PRO TRP SER ARG LEU ASP GLU SEQRES 8 B 537 ALA LYS PRO PHE ILE PRO GLY VAL PRO PRO LYS PRO ASP SEQRES 9 B 537 GLU GLY ASN PHE TYR PRO ALA GLY ALA THR LYS ALA GLU SEQRES 10 B 537 VAL GLU ALA TRP VAL LYS SER LEU PRO GLU ALA GLN GLN SEQRES 11 B 537 HIS ALA ALA THR GLY PHE PHE THR THR VAL ARG LYS GLY SEQRES 12 B 537 PRO ASP GLY LYS PHE LEU THR VAL PRO TYR SER VAL GLU SEQRES 13 B 537 TYR GLN GLY GLU LEU GLY MSE ALA ALA LYS LEU LEU ARG SEQRES 14 B 537 GLU ALA ALA ALA LEU THR GLN GLN SER THR LEU LYS ARG SEQRES 15 B 537 PHE LEU GLU THR ARG ALA GLU ALA PHE LEU SER ASN ASP SEQRES 16 B 537 TYR TYR ALA SER GLU VAL ALA TRP MSE GLU LEU ASP ALA SEQRES 17 B 537 SER VAL GLU PRO THR ILE GLY PRO TYR GLU VAL TYR GLU SEQRES 18 B 537 ASP GLY TRP PHE ASN TYR LYS ALA ALA PHE GLU ALA PHE SEQRES 19 B 537 ILE GLY VAL ARG ASP GLU ALA GLU THR GLN LYS LEU ALA SEQRES 20 B 537 LYS PHE SER ALA GLU LEU GLN GLU LEU GLU ASN ASN LEU SEQRES 21 B 537 PRO ILE GLU PRO ALA LEU ARG ASN PRO LYS LEU GLY ALA SEQRES 22 B 537 LEU ALA PRO ILE ARG VAL ILE ASN SER LEU TYR SER SER SEQRES 23 B 537 GLY ASP GLY ASN ARG GLY VAL GLN THR ALA ALA TYR ASN SEQRES 24 B 537 LEU PRO ASN ASP GLU ARG VAL ALA ALA GLU LYS GLY THR SEQRES 25 B 537 LYS ARG VAL MSE LEU LYS ASN ILE GLN GLU ALA LYS PHE SEQRES 26 B 537 GLN ARG VAL LEU VAL PRO ILE ALA LYS VAL ALA LEU PRO SEQRES 27 B 537 ALA LYS ASP ARG LYS ASP VAL SER PHE ASP ALA PHE PHE SEQRES 28 B 537 THR HIS ILE LEU MSE HIS GLU LEU MSE HIS GLY LEU GLY SEQRES 29 B 537 PRO HIS ASN VAL THR VAL ALA GLY LYS GLN THR THR VAL SEQRES 30 B 537 ARG GLN ALA LEU GLN ALA SER SER SER ALA ILE GLU GLU SEQRES 31 B 537 ALA LYS ALA ASP ILE SER GLY LEU TRP ALA LEU GLN ARG SEQRES 32 B 537 LEU VAL ASP LYS GLY THR LEU ASP LYS GLU LEU GLN ARG SEQRES 33 B 537 THR MSE TYR THR THR PHE LEU ALA SER ALA PHE ARG SER SEQRES 34 B 537 ILE ARG PHE GLY ILE ASP GLU ALA HIS GLY LYS GLY ILE SEQRES 35 B 537 ALA LEU GLN LEU ASN HIS PHE LEU ASP THR GLY ALA VAL SEQRES 36 B 537 LYS VAL ASN ALA ASP GLY THR PHE GLU VAL VAL PRO ASP SEQRES 37 B 537 LYS MSE GLN ALA SER VAL THR SER LEU THR ASN GLN LEU SEQRES 38 B 537 MSE SER LEU GLN ALA LYS GLY ASP ARG ALA ALA ALA GLU SEQRES 39 B 537 GLU LEU LEU ALA LYS GLN GLY VAL VAL ARG PRO SER VAL SEQRES 40 B 537 GLN LYS VAL LEU GLU LYS LEU LYS ASN VAL PRO VAL ASP SEQRES 41 B 537 ILE GLU PRO ARG TYR VAL THR ALA GLU SER LEU VAL LYS SEQRES 42 B 537 ASP PHE GLY ALA HET MSE A 38 8 HET MSE A 72 8 HET MSE A 190 8 HET MSE A 231 8 HET MSE A 343 8 HET MSE A 383 8 HET MSE A 387 8 HET MSE A 445 8 HET MSE A 497 8 HET MSE A 509 8 HET MSE B 38 8 HET MSE B 72 8 HET MSE B 190 8 HET MSE B 231 8 HET MSE B 343 8 HET MSE B 383 8 HET MSE B 387 8 HET MSE B 445 8 HET MSE B 497 8 HET MSE B 509 8 HET ZN A 601 1 HET ZN B 601 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *934(H2 O) HELIX 1 AA1 ASP A 31 ALA A 40 1 10 HELIX 2 AA2 PRO A 55 ILE A 71 1 17 HELIX 3 AA3 ILE A 71 TRP A 81 1 11 HELIX 4 AA4 GLY A 83 VAL A 92 1 10 HELIX 5 AA5 THR A 96 LYS A 110 1 15 HELIX 6 AA6 THR A 141 SER A 151 1 11 HELIX 7 AA7 PRO A 153 GLY A 162 1 10 HELIX 8 AA8 TYR A 180 TYR A 184 1 5 HELIX 9 AA9 TYR A 184 THR A 202 1 19 HELIX 10 AB1 GLN A 204 ASN A 221 1 18 HELIX 11 AB2 TYR A 223 GLU A 232 1 10 HELIX 12 AB3 ASP A 266 ALA A 274 1 9 HELIX 13 AB4 LYS A 275 ALA A 278 5 4 HELIX 14 AB5 GLU A 279 ASN A 286 1 8 HELIX 15 AB6 GLU A 290 ARG A 294 5 5 HELIX 16 AB7 ASP A 330 GLY A 338 1 9 HELIX 17 AB8 LYS A 345 VAL A 355 1 11 HELIX 18 AB9 VAL A 355 LEU A 364 1 10 HELIX 19 AC1 PRO A 365 VAL A 372 5 8 HELIX 20 AC2 SER A 373 GLY A 389 1 17 HELIX 21 AC3 VAL A 404 GLN A 409 1 6 HELIX 22 AC4 SER A 411 LYS A 434 1 24 HELIX 23 AC5 GLU A 440 ARG A 458 1 19 HELIX 24 AC6 GLU A 463 THR A 479 1 17 HELIX 25 AC7 VAL A 493 GLY A 515 1 23 HELIX 26 AC8 ASP A 516 GLY A 528 1 13 HELIX 27 AC9 ARG A 531 LYS A 540 1 10 HELIX 28 AD1 TYR A 552 VAL A 559 1 8 HELIX 29 AD2 ASP B 31 ARG B 41 1 11 HELIX 30 AD3 PRO B 55 ILE B 71 1 17 HELIX 31 AD4 ILE B 71 TRP B 81 1 11 HELIX 32 AD5 GLY B 83 ASP B 94 1 12 HELIX 33 AD6 THR B 96 LYS B 110 1 15 HELIX 34 AD7 THR B 141 SER B 151 1 11 HELIX 35 AD8 PRO B 153 THR B 161 1 9 HELIX 36 AD9 TYR B 180 TYR B 184 1 5 HELIX 37 AE1 TYR B 184 THR B 202 1 19 HELIX 38 AE2 GLN B 204 ASN B 221 1 18 HELIX 39 AE3 TYR B 223 GLU B 232 1 10 HELIX 40 AE4 ASP B 266 ALA B 274 1 9 HELIX 41 AE5 LYS B 275 ALA B 278 5 4 HELIX 42 AE6 GLU B 279 ASN B 286 1 8 HELIX 43 AE7 GLU B 290 ARG B 294 5 5 HELIX 44 AE8 ASP B 330 GLY B 338 1 9 HELIX 45 AE9 LYS B 345 VAL B 355 1 11 HELIX 46 AF1 VAL B 355 LEU B 364 1 10 HELIX 47 AF2 PRO B 365 VAL B 372 5 8 HELIX 48 AF3 SER B 373 GLY B 389 1 17 HELIX 49 AF4 VAL B 404 GLN B 409 1 6 HELIX 50 AF5 SER B 411 LYS B 434 1 24 HELIX 51 AF6 GLU B 440 ARG B 458 1 19 HELIX 52 AF7 GLU B 463 THR B 479 1 17 HELIX 53 AF8 VAL B 493 GLY B 515 1 23 HELIX 54 AF9 ASP B 516 GLY B 528 1 13 HELIX 55 AG1 ARG B 531 LYS B 540 1 10 HELIX 56 AG2 TYR B 552 GLY B 563 1 12 SHEET 1 AA1 2 PHE A 42 ASP A 46 0 SHEET 2 AA1 2 ASP A 547 ARG A 551 1 O ARG A 551 N VAL A 45 SHEET 1 AA2 2 THR A 165 LYS A 169 0 SHEET 2 AA2 2 PHE A 175 PRO A 179 -1 O LEU A 176 N ARG A 168 SHEET 1 AA3 5 VAL A 237 PRO A 243 0 SHEET 2 AA3 5 PHE A 258 ARG A 265 -1 O GLY A 263 N GLU A 238 SHEET 3 AA3 5 ILE A 304 GLY A 314 -1 O LEU A 310 N ILE A 262 SHEET 4 AA3 5 LYS A 340 LEU A 344 1 O ARG A 341 N ARG A 305 SHEET 5 AA3 5 ALA A 324 LEU A 327 -1 N LEU A 327 O LYS A 340 SHEET 1 AA4 2 ASN A 394 VAL A 397 0 SHEET 2 AA4 2 LYS A 400 THR A 403 -1 O THR A 402 N VAL A 395 SHEET 1 AA5 2 VAL A 482 VAL A 484 0 SHEET 2 AA5 2 PHE A 490 VAL A 492 -1 O GLU A 491 N LYS A 483 SHEET 1 AA6 2 PHE B 42 ASP B 46 0 SHEET 2 AA6 2 ASP B 547 ARG B 551 1 O GLU B 549 N ALA B 43 SHEET 1 AA7 2 THR B 165 LYS B 169 0 SHEET 2 AA7 2 PHE B 175 PRO B 179 -1 O VAL B 178 N THR B 166 SHEET 1 AA8 5 VAL B 237 GLU B 245 0 SHEET 2 AA8 5 ALA B 257 ARG B 265 -1 O GLY B 263 N GLU B 238 SHEET 3 AA8 5 ILE B 304 GLY B 314 -1 O LEU B 310 N ILE B 262 SHEET 4 AA8 5 LYS B 340 LEU B 344 1 O MSE B 343 N ILE B 307 SHEET 5 AA8 5 ALA B 324 LEU B 327 -1 N LEU B 327 O LYS B 340 SHEET 1 AA9 2 ASN B 394 VAL B 397 0 SHEET 2 AA9 2 LYS B 400 THR B 403 -1 O THR B 402 N VAL B 395 SHEET 1 AB1 2 VAL B 482 VAL B 484 0 SHEET 2 AB1 2 PHE B 490 VAL B 492 -1 O GLU B 491 N LYS B 483 LINK C ARG A 37 N MSE A 38 1555 1555 1.31 LINK C MSE A 38 N THR A 39 1555 1555 1.31 LINK C ILE A 71 N MSE A 72 1555 1555 1.32 LINK C MSE A 72 N ASP A 73 1555 1555 1.33 LINK C GLY A 189 N MSE A 190 1555 1555 1.34 LINK C MSE A 190 N ALA A 191 1555 1555 1.34 LINK C TRP A 230 N MSE A 231 1555 1555 1.33 LINK C MSE A 231 N GLU A 232 1555 1555 1.34 LINK C VAL A 342 N MSE A 343 1555 1555 1.33 LINK C MSE A 343 N LEU A 344 1555 1555 1.33 LINK C LEU A 382 N MSE A 383 1555 1555 1.32 LINK C MSE A 383 N HIS A 384 1555 1555 1.32 LINK NE2 HIS A 384 ZN ZN A 601 1555 1555 2.17 LINK C LEU A 386 N MSE A 387 1555 1555 1.33 LINK C MSE A 387 N HIS A 388 1555 1555 1.33 LINK NE2 HIS A 388 ZN ZN A 601 1555 1555 2.06 LINK OE1 GLU A 417 ZN ZN A 601 1555 1555 2.07 LINK C THR A 444 N MSE A 445 1555 1555 1.34 LINK C MSE A 445 N TYR A 446 1555 1555 1.34 LINK C LYS A 496 N MSE A 497 1555 1555 1.31 LINK C MSE A 497 N GLN A 498 1555 1555 1.32 LINK C LEU A 508 N MSE A 509 1555 1555 1.33 LINK C MSE A 509 N SER A 510 1555 1555 1.32 LINK C ARG B 37 N MSE B 38 1555 1555 1.33 LINK C MSE B 38 N THR B 39 1555 1555 1.33 LINK C ILE B 71 N MSE B 72 1555 1555 1.33 LINK C MSE B 72 N ASP B 73 1555 1555 1.33 LINK C GLY B 189 N MSE B 190 1555 1555 1.32 LINK C MSE B 190 N ALA B 191 1555 1555 1.34 LINK C TRP B 230 N MSE B 231 1555 1555 1.32 LINK C MSE B 231 N GLU B 232 1555 1555 1.34 LINK C VAL B 342 N MSE B 343 1555 1555 1.32 LINK C MSE B 343 N LEU B 344 1555 1555 1.34 LINK C LEU B 382 N MSE B 383 1555 1555 1.34 LINK C MSE B 383 N HIS B 384 1555 1555 1.32 LINK NE2 HIS B 384 ZN ZN B 601 1555 1555 2.08 LINK C LEU B 386 N MSE B 387 1555 1555 1.33 LINK C MSE B 387 N HIS B 388 1555 1555 1.33 LINK NE2 HIS B 388 ZN ZN B 601 1555 1555 1.98 LINK OE2 GLU B 417 ZN ZN B 601 1555 1555 1.86 LINK C THR B 444 N MSE B 445 1555 1555 1.32 LINK C MSE B 445 N TYR B 446 1555 1555 1.33 LINK C LYS B 496 N MSE B 497 1555 1555 1.33 LINK C MSE B 497 N GLN B 498 1555 1555 1.33 LINK C LEU B 508 N MSE B 509 1555 1555 1.33 LINK C MSE B 509 N SER B 510 1555 1555 1.34 LINK ZN ZN A 601 O HOH A1089 1555 1555 2.26 CISPEP 1 LEU A 327 PRO A 328 0 5.02 CISPEP 2 LEU B 327 PRO B 328 0 2.16 SITE 1 AC1 4 HIS A 384 HIS A 388 GLU A 417 HOH A1089 SITE 1 AC2 3 HIS B 384 HIS B 388 GLU B 417 CRYST1 58.141 77.850 228.294 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017200 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012845 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004380 0.00000