HEADER CELL CYCLE 08-MAY-18 5ZUT TITLE CRYSTAL STRUCTURE OF YEAST PCNA IN COMPLEX WITH N24 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLIFERATING CELL NUCLEAR ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PCNA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: N24; COMPND 8 CHAIN: E; COMPND 9 SYNONYM: PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT GAMMA; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: POL30, YBR088C, YBR0811; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: PIK3R3; SOURCE 15 EXPRESSION_SYSTEM: UNIDENTIFIED; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 32644 KEYWDS YEAST PCNA, PI3K, N24 PEPTIDE, PROLIFERATION, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR X.Y.CHENG,X.L.KUANG,Y.ZHOU,X.M.XIA,Z.D.SU REVDAT 3 05-JUN-24 5ZUT 1 REMARK REVDAT 2 22-NOV-23 5ZUT 1 REMARK REVDAT 1 30-MAY-18 5ZUT 0 JRNL AUTH X.Y.CHENG,X.L.KUANG,Y.ZHOU,X.M.XIA,Z.D.SU JRNL TITL CRYSTAL STRUCTURE OF YEAST PCNA IN COMPLEX WITH N24 PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 8684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.330 REMARK 3 R VALUE (WORKING SET) : 0.326 REMARK 3 FREE R VALUE : 0.397 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.700 REMARK 3 FREE R VALUE TEST SET COUNT : 527 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 672 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.7120 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.8120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2155 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 67.58000 REMARK 3 B22 (A**2) : -81.24000 REMARK 3 B33 (A**2) : 13.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 114.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.889 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.809 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2189 ; 0.005 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2059 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2953 ; 1.063 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4826 ; 1.392 ; 1.639 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 271 ; 8.837 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;33.033 ;24.423 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 414 ;20.118 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.145 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 300 ; 0.043 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2397 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 387 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1090 ; 3.493 ;10.151 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1089 ; 3.490 ;10.150 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1359 ; 5.734 ;15.213 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5ZUT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300007661. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 3.24 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9212 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.830 REMARK 200 RESOLUTION RANGE LOW (A) : 58.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.51200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 6B8I, 5DA7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: N-OCTYL-B-D-GLU, NACI PH 5.5, PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.17500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.01500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.17500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.01500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 256 REMARK 465 GLU A 257 REMARK 465 GLU A 258 REMARK 465 GLY A 259 REMARK 465 GLY A 260 REMARK 465 GLY A 261 REMARK 465 MET A 262 REMARK 465 ASP A 263 REMARK 465 ARG A 264 REMARK 465 ASP A 265 REMARK 465 ASP A 266 REMARK 465 ALA A 267 REMARK 465 ASP A 268 REMARK 465 TRP A 269 REMARK 465 ARG A 270 REMARK 465 GLU A 271 REMARK 465 VAL A 272 REMARK 465 MET A 273 REMARK 465 MET A 274 REMARK 465 PRO A 275 REMARK 465 TYR A 276 REMARK 465 SER A 277 REMARK 465 THR A 278 REMARK 465 GLU A 279 REMARK 465 LEU A 280 REMARK 465 ILE A 281 REMARK 465 PHE A 282 REMARK 465 TYR A 283 REMARK 465 ILE A 284 REMARK 465 GLU A 285 REMARK 465 MET A 286 REMARK 465 ASP A 287 REMARK 465 PRO A 288 REMARK 465 CYS A 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 192 NH1 ARG A 224 1.93 REMARK 500 OD2 ASP A 134 OG SER A 231 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 134 C GLU A 198 2556 1.81 REMARK 500 OD1 ASP A 134 CA GLU A 198 2556 1.84 REMARK 500 OD1 ASP A 134 CB GLU A 198 2556 2.00 REMARK 500 N THR A 136 OD1 ASP A 200 2556 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 4 81.81 -172.40 REMARK 500 PHE A 19 -84.45 -69.07 REMARK 500 LYS A 20 -80.75 27.89 REMARK 500 CYS A 22 -53.47 131.92 REMARK 500 VAL A 26 149.56 -170.81 REMARK 500 GLU A 32 -72.25 14.94 REMARK 500 ALA A 39 148.41 -175.94 REMARK 500 ARG A 44 62.32 70.88 REMARK 500 ARG A 61 112.30 -174.32 REMARK 500 SER A 74 -72.18 -58.21 REMARK 500 CYS A 81 -80.29 -60.55 REMARK 500 ASN A 94 114.26 -30.50 REMARK 500 LYS A 108 126.65 -36.02 REMARK 500 ASP A 109 156.90 153.46 REMARK 500 MET A 119 -62.35 -153.93 REMARK 500 ASP A 120 -114.36 62.93 REMARK 500 ALA A 123 49.51 -173.44 REMARK 500 ASP A 124 -146.86 43.12 REMARK 500 PHE A 125 -138.00 72.16 REMARK 500 LEU A 126 71.30 66.72 REMARK 500 GLU A 130 -58.53 -139.66 REMARK 500 LEU A 131 -164.89 53.26 REMARK 500 GLN A 132 -162.27 -163.38 REMARK 500 ASP A 134 -169.67 125.53 REMARK 500 SER A 135 -135.87 -165.74 REMARK 500 LEU A 137 -179.83 -170.09 REMARK 500 SER A 157 107.51 -165.90 REMARK 500 GLU A 165 61.38 30.32 REMARK 500 THR A 166 149.90 -178.74 REMARK 500 SER A 179 75.96 -165.68 REMARK 500 HIS A 190 89.87 -158.25 REMARK 500 SER A 194 168.25 -47.91 REMARK 500 ASP A 200 -76.01 -105.02 REMARK 500 GLN A 201 107.85 171.17 REMARK 500 PRO A 202 143.94 -17.27 REMARK 500 ASP A 204 98.49 175.35 REMARK 500 SER A 230 147.22 -174.41 REMARK 500 SER A 243 82.56 93.95 REMARK 500 PRO A 252 -98.51 -87.54 REMARK 500 LYS A 253 168.37 179.59 REMARK 500 VAL E 35 -96.11 -73.63 REMARK 500 GLU E 42 -62.23 66.06 REMARK 500 ILE E 44 110.81 -160.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 135 THR A 136 -133.26 REMARK 500 REMARK 500 REMARK: NULL DBREF 5ZUT A 1 258 UNP P15873 PCNA_YEAST 1 258 DBREF 5ZUT E 34 51 UNP Q5T4P3 Q5T4P3_HUMAN 17 34 SEQADV 5ZUT GLY A 259 UNP P15873 EXPRESSION TAG SEQADV 5ZUT GLY A 260 UNP P15873 EXPRESSION TAG SEQADV 5ZUT GLY A 261 UNP P15873 EXPRESSION TAG SEQADV 5ZUT MET A 262 UNP P15873 EXPRESSION TAG SEQADV 5ZUT ASP A 263 UNP P15873 EXPRESSION TAG SEQADV 5ZUT ARG A 264 UNP P15873 EXPRESSION TAG SEQADV 5ZUT ASP A 265 UNP P15873 EXPRESSION TAG SEQADV 5ZUT ASP A 266 UNP P15873 EXPRESSION TAG SEQADV 5ZUT ALA A 267 UNP P15873 EXPRESSION TAG SEQADV 5ZUT ASP A 268 UNP P15873 EXPRESSION TAG SEQADV 5ZUT TRP A 269 UNP P15873 EXPRESSION TAG SEQADV 5ZUT ARG A 270 UNP P15873 EXPRESSION TAG SEQADV 5ZUT GLU A 271 UNP P15873 EXPRESSION TAG SEQADV 5ZUT VAL A 272 UNP P15873 EXPRESSION TAG SEQADV 5ZUT MET A 273 UNP P15873 EXPRESSION TAG SEQADV 5ZUT MET A 274 UNP P15873 EXPRESSION TAG SEQADV 5ZUT PRO A 275 UNP P15873 EXPRESSION TAG SEQADV 5ZUT TYR A 276 UNP P15873 EXPRESSION TAG SEQADV 5ZUT SER A 277 UNP P15873 EXPRESSION TAG SEQADV 5ZUT THR A 278 UNP P15873 EXPRESSION TAG SEQADV 5ZUT GLU A 279 UNP P15873 EXPRESSION TAG SEQADV 5ZUT LEU A 280 UNP P15873 EXPRESSION TAG SEQADV 5ZUT ILE A 281 UNP P15873 EXPRESSION TAG SEQADV 5ZUT PHE A 282 UNP P15873 EXPRESSION TAG SEQADV 5ZUT TYR A 283 UNP P15873 EXPRESSION TAG SEQADV 5ZUT ILE A 284 UNP P15873 EXPRESSION TAG SEQADV 5ZUT GLU A 285 UNP P15873 EXPRESSION TAG SEQADV 5ZUT MET A 286 UNP P15873 EXPRESSION TAG SEQADV 5ZUT ASP A 287 UNP P15873 EXPRESSION TAG SEQADV 5ZUT PRO A 288 UNP P15873 EXPRESSION TAG SEQADV 5ZUT CYS A 289 UNP P15873 EXPRESSION TAG SEQRES 1 A 289 MET LEU GLU ALA LYS PHE GLU GLU ALA SER LEU PHE LYS SEQRES 2 A 289 ARG ILE ILE ASP GLY PHE LYS ASP CYS VAL GLN LEU VAL SEQRES 3 A 289 ASN PHE GLN CYS LYS GLU ASP GLY ILE ILE ALA GLN ALA SEQRES 4 A 289 VAL ASP ASP SER ARG VAL LEU LEU VAL SER LEU GLU ILE SEQRES 5 A 289 GLY VAL GLU ALA PHE GLN GLU TYR ARG CYS ASP HIS PRO SEQRES 6 A 289 VAL THR LEU GLY MET ASP LEU THR SER LEU SER LYS ILE SEQRES 7 A 289 LEU ARG CYS GLY ASN ASN THR ASP THR LEU THR LEU ILE SEQRES 8 A 289 ALA ASP ASN THR PRO ASP SER ILE ILE LEU LEU PHE GLU SEQRES 9 A 289 ASP THR LYS LYS ASP ARG ILE ALA GLU TYR SER LEU LYS SEQRES 10 A 289 LEU MET ASP ILE ASP ALA ASP PHE LEU LYS ILE GLU GLU SEQRES 11 A 289 LEU GLN TYR ASP SER THR LEU SER LEU PRO SER SER GLU SEQRES 12 A 289 PHE SER LYS ILE VAL ARG ASP LEU SER GLN LEU SER ASP SEQRES 13 A 289 SER ILE ASN ILE MET ILE THR LYS GLU THR ILE LYS PHE SEQRES 14 A 289 VAL ALA ASP GLY ASP ILE GLY SER GLY SER VAL ILE ILE SEQRES 15 A 289 LYS PRO PHE VAL ASP MET GLU HIS PRO GLU THR SER ILE SEQRES 16 A 289 LYS LEU GLU MET ASP GLN PRO VAL ASP LEU THR PHE GLY SEQRES 17 A 289 ALA LYS TYR LEU LEU ASP ILE ILE LYS GLY SER SER LEU SEQRES 18 A 289 SER ASP ARG VAL GLY ILE ARG LEU SER SER GLU ALA PRO SEQRES 19 A 289 ALA LEU PHE GLN PHE ASP LEU LYS SER GLY PHE LEU GLN SEQRES 20 A 289 PHE PHE LEU ALA PRO LYS PHE ASN ASP GLU GLU GLY GLY SEQRES 21 A 289 GLY MET ASP ARG ASP ASP ALA ASP TRP ARG GLU VAL MET SEQRES 22 A 289 MET PRO TYR SER THR GLU LEU ILE PHE TYR ILE GLU MET SEQRES 23 A 289 ASP PRO CYS SEQRES 1 E 18 GLU VAL MET MET PRO TYR SER THR GLU LEU ILE PHE TYR SEQRES 2 E 18 ILE GLU MET ASP PRO HELIX 1 AA1 ALA A 9 ASP A 21 1 13 HELIX 2 AA2 LEU A 72 ARG A 80 1 9 HELIX 3 AA3 PRO A 140 SER A 155 1 16 HELIX 4 AA4 GLY A 208 ILE A 216 1 9 HELIX 5 AA5 LYS A 217 LEU A 221 5 5 HELIX 6 AA6 PHE E 45 MET E 49 5 5 SHEET 1 AA1 2 LEU A 2 LYS A 5 0 SHEET 2 AA1 2 GLU A 59 CYS A 62 -1 O GLU A 59 N LYS A 5 SHEET 1 AA2 2 LEU A 25 CYS A 30 0 SHEET 2 AA2 2 VAL A 66 ASP A 71 -1 O LEU A 68 N PHE A 28 SHEET 1 AA3 5 GLY A 34 VAL A 40 0 SHEET 2 AA3 5 LEU A 46 GLY A 53 -1 O ILE A 52 N ILE A 35 SHEET 3 AA3 5 GLY A 244 LEU A 250 -1 O PHE A 249 N LEU A 47 SHEET 4 AA3 5 ALA A 235 ASP A 240 -1 N PHE A 237 O PHE A 248 SHEET 5 AA3 5 GLY A 226 ARG A 228 -1 N GLY A 226 O GLN A 238 SHEET 1 AA4 3 THR A 87 ILE A 91 0 SHEET 2 AA4 3 SER A 98 GLU A 104 -1 O ILE A 100 N ILE A 91 SHEET 3 AA4 3 ALA A 112 LYS A 117 -1 O ALA A 112 N PHE A 103 SHEET 1 AA5 3 ASN A 159 THR A 163 0 SHEET 2 AA5 3 THR A 166 VAL A 170 -1 O VAL A 170 N ASN A 159 SHEET 3 AA5 3 VAL A 180 ILE A 182 -1 O VAL A 180 N PHE A 169 CRYST1 80.350 84.030 58.150 90.00 93.62 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012446 0.000000 0.000787 0.00000 SCALE2 0.000000 0.011901 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017231 0.00000