HEADER STRUCTURAL PROTEIN/DNA 09-MAY-18 5ZVA TITLE APOBEC3F CHIMERIC CATALYTIC DOMAIN IN COMPLEX WITH DNA(DC9) COMPND MOL_ID: 1; COMPND 2 MOLECULE: APEBEC3F/SSDNA-C9; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APOBEC-RELATED CYTIDINE DEAMINASE,ARCD,APOBEC-RELATED COMPND 5 PROTEIN 9,ARP-9,CEM-15,CEM15,DEOXYCYTIDINE DEAMINASE,A3G, COMPND 6 APOLIPOPROTEIN B MRNA-EDITING ENZYME CATALYTIC POLYPEPTIDE-LIKE 3F, COMPND 7 A3F; COMPND 8 EC: 3.5.4.-,3.5.4.-; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: ALL RESIDURES INCLUDES PURIFICATION TAG OF COMPND 11 A3F(6HIS+THROMBIN CLEAVAGE TAG+ CHIMERIC A3F) (REFERENCE: K. SIU, ET COMPND 12 AL. NAT. COMMUN. 2013, 4, 2593. PDB CODE:4J4J),ALL RESIDURES INCLUDES COMPND 13 PURIFICATION TAG OF A3F(6HIS+THROMBIN CLEAVAGE TAG+ CHIMERIC A3F) COMPND 14 (REFERENCE: K. SIU, ET AL. NAT. COMMUN. 2013, 4, 2593. PDB COMPND 15 CODE:4J4J); COMPND 16 MOL_ID: 2; COMPND 17 MOLECULE: DNA (5'-D(*AP*TP*TP*TP*TP*CP*AP*AP*CP*T)-3'); COMPND 18 CHAIN: C; COMPND 19 ENGINEERED: YES; COMPND 20 OTHER_DETAILS: CHEMICALLY SYNTHESIZED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APOBEC3G, MDS019, APOBEC3F; SOURCE 6 EXPRESSION_SYSTEM: PROKARYOTIC ENVIRONMENTAL SAMPLES; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 81490; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: DNA-BINDING VECTOR PODB80; SOURCE 11 ORGANISM_TAXID: 62978 KEYWDS APOBEC3F, HIV-1, DEAMINATION, STRUCTURAL PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.CHENG,T.L.ZHANG,C.X.WANG,W.X.LAN,J.P.DING,C.Y.CAO REVDAT 2 28-NOV-18 5ZVA 1 TITLE COMPND JRNL REVDAT 1 21-NOV-18 5ZVA 0 JRNL AUTH C.CHENG,T.ZHANG,C.WANG,W.LAN,J.DING,C.CAO JRNL TITL CRYSTAL STRUCTURE OF CYTIDINE DEAMINASE HUMAN APOBEC3F JRNL TITL 2 CHIMERIC CATALYTIC DOMAIN IN COMPLEX WITH DNA JRNL REF CHIN.J.CHEM. V. 36 1241 2018 JRNL REFN ISSN 1001-604X JRNL DOI 10.1002/CJOC.201800508 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 21994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1158 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.147 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.71000 REMARK 3 B22 (A**2) : 2.18000 REMARK 3 B33 (A**2) : 0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -32 THROUGH 373 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3506 -5.4280 -4.0854 REMARK 3 T TENSOR REMARK 3 T11: 0.0739 T22: 0.0009 REMARK 3 T33: 0.0390 T12: 0.0001 REMARK 3 T13: -0.0052 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.0768 L22: 0.1379 REMARK 3 L33: 0.0540 L12: 0.0152 REMARK 3 L13: -0.0574 L23: -0.0488 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: -0.0045 S13: 0.0073 REMARK 3 S21: 0.0048 S22: -0.0070 S23: -0.0087 REMARK 3 S31: -0.0018 S32: 0.0050 S33: 0.0018 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -29 THROUGH 373 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2109 -28.4956 28.9230 REMARK 3 T TENSOR REMARK 3 T11: 0.0714 T22: 0.0005 REMARK 3 T33: 0.0385 T12: -0.0009 REMARK 3 T13: 0.0003 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.0350 L22: 0.0862 REMARK 3 L33: 0.1690 L12: -0.0547 REMARK 3 L13: 0.0039 L23: -0.0158 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: -0.0033 S13: -0.0017 REMARK 3 S21: 0.0041 S22: 0.0057 S23: -0.0002 REMARK 3 S31: 0.0025 S32: -0.0016 S33: -0.0020 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9308 -26.9196 12.6758 REMARK 3 T TENSOR REMARK 3 T11: 0.1752 T22: 0.0457 REMARK 3 T33: 0.0367 T12: -0.0354 REMARK 3 T13: 0.0297 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 6.5691 L22: 0.2317 REMARK 3 L33: 1.7847 L12: 0.5800 REMARK 3 L13: 2.2116 L23: -0.2378 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: 0.0257 S13: -0.3485 REMARK 3 S21: -0.1495 S22: -0.0081 S23: -0.0676 REMARK 3 S31: 0.3715 S32: 0.0420 S33: -0.0277 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5ZVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300007691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADDREF REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23245 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 45.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M SODIUM CACODYLATE, PH 6.5, AND REMARK 280 30%(V/V) 2-METHYL-2,4-PENTANEDIOL(MPD), VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.65600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.67700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.65200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.67700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.65600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.65200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -53 REMARK 465 ALA A -52 REMARK 465 HIS A -51 REMARK 465 HIS A -50 REMARK 465 HIS A -49 REMARK 465 HIS A -48 REMARK 465 HIS A -47 REMARK 465 HIS A -46 REMARK 465 VAL A -45 REMARK 465 ASP A -44 REMARK 465 ASP A -43 REMARK 465 ASP A -42 REMARK 465 ASP A -41 REMARK 465 LYS A -40 REMARK 465 MET A -39 REMARK 465 LEU A -38 REMARK 465 VAL A -37 REMARK 465 PRO A -36 REMARK 465 ARG A -35 REMARK 465 GLY A -34 REMARK 465 SER A -33 REMARK 465 VAL A 242 REMARK 465 ASP A 243 REMARK 465 PRO A 244 REMARK 465 GLU A 245 REMARK 465 MET B -53 REMARK 465 ALA B -52 REMARK 465 HIS B -51 REMARK 465 HIS B -50 REMARK 465 HIS B -49 REMARK 465 HIS B -48 REMARK 465 HIS B -47 REMARK 465 HIS B -46 REMARK 465 VAL B -45 REMARK 465 ASP B -44 REMARK 465 ASP B -43 REMARK 465 ASP B -42 REMARK 465 ASP B -41 REMARK 465 LYS B -40 REMARK 465 MET B -39 REMARK 465 LEU B -38 REMARK 465 VAL B -37 REMARK 465 PRO B -36 REMARK 465 ARG B -35 REMARK 465 GLY B -34 REMARK 465 SER B -33 REMARK 465 GLU B -32 REMARK 465 ASN B -31 REMARK 465 LEU B -30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 246 OG1 CG2 REMARK 470 GLN B 241 CG CD OE1 NE2 REMARK 470 GLU B 245 CG CD OE1 OE2 REMARK 470 THR B 246 OG1 CG2 REMARK 470 DT C 10 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT C 10 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT C 10 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B -1 C LEU B 218 N 0.167 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A -5 79.15 -102.83 REMARK 500 CYS B 248 124.71 -177.93 REMARK 500 ASN B 266 42.28 -99.90 REMARK 500 TYR B 345 75.57 -69.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 249 ND1 REMARK 620 2 CYS A 280 SG 104.0 REMARK 620 3 CYS A 283 SG 112.1 123.0 REMARK 620 4 CAC A 402 O1 104.0 94.3 116.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 249 ND1 REMARK 620 2 CYS B 280 SG 108.5 REMARK 620 3 CYS B 283 SG 109.9 119.2 REMARK 620 4 CAC B 402 O1 111.4 99.3 108.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC B 402 DBREF 5ZVA A -23 -1 UNP Q9HC16 ABC3G_HUMAN 197 219 DBREF 5ZVA A 218 373 UNP Q8IUX4 ABC3F_HUMAN 218 373 DBREF 5ZVA B -23 -1 UNP Q9HC16 ABC3G_HUMAN 197 219 DBREF 5ZVA B 218 373 UNP Q8IUX4 ABC3F_HUMAN 218 373 DBREF 5ZVA C 1 9 PDB 5ZVA 5ZVA 1 9 SEQADV 5ZVA MET A -53 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA ALA A -52 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA HIS A -51 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA HIS A -50 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA HIS A -49 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA HIS A -48 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA HIS A -47 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA HIS A -46 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA VAL A -45 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA ASP A -44 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA ASP A -43 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA ASP A -42 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA ASP A -41 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA LYS A -40 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA MET A -39 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA LEU A -38 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA VAL A -37 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA PRO A -36 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA ARG A -35 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA GLY A -34 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA SER A -33 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA GLU A -32 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA ASN A -31 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA LEU A -30 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA TYR A -29 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA PHE A -28 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA GLN A -27 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA GLY A -26 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA SER A -25 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA ALA A -24 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA MET B -53 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA ALA B -52 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA HIS B -51 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA HIS B -50 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA HIS B -49 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA HIS B -48 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA HIS B -47 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA HIS B -46 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA VAL B -45 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA ASP B -44 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA ASP B -43 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA ASP B -42 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA ASP B -41 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA LYS B -40 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA MET B -39 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA LEU B -38 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA VAL B -37 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA PRO B -36 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA ARG B -35 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA GLY B -34 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA SER B -33 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA GLU B -32 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA ASN B -31 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA LEU B -30 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA TYR B -29 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA PHE B -28 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA GLN B -27 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA GLY B -26 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA SER B -25 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVA ALA B -24 UNP Q9HC16 EXPRESSION TAG SEQRES 1 A 209 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 209 LYS MET LEU VAL PRO ARG GLY SER GLU ASN LEU TYR PHE SEQRES 3 A 209 GLN GLY SER ALA MET ASP PRO PRO THR PHE THR PHE ASN SEQRES 4 A 209 PHE ASN ASN GLU PRO TRP VAL ARG GLY ARG HIS GLU THR SEQRES 5 A 209 TYR LEU CYS PHE THR MET GLU VAL VAL LYS HIS HIS SER SEQRES 6 A 209 PRO VAL SER TRP LYS ARG GLY VAL PHE ARG ASN GLN VAL SEQRES 7 A 209 ASP PRO GLU THR HIS CYS HIS ALA GLU ARG CYS PHE LEU SEQRES 8 A 209 SER TRP PHE CYS ASP ASP ILE LEU SER PRO ASN THR ASN SEQRES 9 A 209 TYR GLU VAL THR TRP TYR THR SER TRP SER PRO CYS PRO SEQRES 10 A 209 GLU CYS ALA GLY GLU VAL ALA GLU PHE LEU ALA ARG HIS SEQRES 11 A 209 SER ASN VAL ASN LEU THR ILE PHE THR ALA ARG LEU TYR SEQRES 12 A 209 TYR PHE TRP ASP THR ASP TYR GLN GLU GLY LEU ARG SER SEQRES 13 A 209 LEU SER GLN GLU GLY ALA SER VAL GLU ILE MET GLY TYR SEQRES 14 A 209 LYS ASP PHE LYS TYR CYS TRP GLU ASN PHE VAL TYR ASN SEQRES 15 A 209 ASP ASP GLU PRO PHE LYS PRO TRP LYS GLY LEU LYS TYR SEQRES 16 A 209 ASN PHE LEU PHE LEU ASP SER LYS LEU GLN GLU ILE LEU SEQRES 17 A 209 GLU SEQRES 1 B 209 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 B 209 LYS MET LEU VAL PRO ARG GLY SER GLU ASN LEU TYR PHE SEQRES 3 B 209 GLN GLY SER ALA MET ASP PRO PRO THR PHE THR PHE ASN SEQRES 4 B 209 PHE ASN ASN GLU PRO TRP VAL ARG GLY ARG HIS GLU THR SEQRES 5 B 209 TYR LEU CYS PHE THR MET GLU VAL VAL LYS HIS HIS SER SEQRES 6 B 209 PRO VAL SER TRP LYS ARG GLY VAL PHE ARG ASN GLN VAL SEQRES 7 B 209 ASP PRO GLU THR HIS CYS HIS ALA GLU ARG CYS PHE LEU SEQRES 8 B 209 SER TRP PHE CYS ASP ASP ILE LEU SER PRO ASN THR ASN SEQRES 9 B 209 TYR GLU VAL THR TRP TYR THR SER TRP SER PRO CYS PRO SEQRES 10 B 209 GLU CYS ALA GLY GLU VAL ALA GLU PHE LEU ALA ARG HIS SEQRES 11 B 209 SER ASN VAL ASN LEU THR ILE PHE THR ALA ARG LEU TYR SEQRES 12 B 209 TYR PHE TRP ASP THR ASP TYR GLN GLU GLY LEU ARG SER SEQRES 13 B 209 LEU SER GLN GLU GLY ALA SER VAL GLU ILE MET GLY TYR SEQRES 14 B 209 LYS ASP PHE LYS TYR CYS TRP GLU ASN PHE VAL TYR ASN SEQRES 15 B 209 ASP ASP GLU PRO PHE LYS PRO TRP LYS GLY LEU LYS TYR SEQRES 16 B 209 ASN PHE LEU PHE LEU ASP SER LYS LEU GLN GLU ILE LEU SEQRES 17 B 209 GLU SEQRES 1 C 10 DA DT DT DT DT DC DA DA DC DT HET ZN A 401 1 HET CAC A 402 5 HET ZN B 401 1 HET CAC B 402 5 HETNAM ZN ZINC ION HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 4 ZN 2(ZN 2+) FORMUL 5 CAC 2(C2 H6 AS O2 1-) FORMUL 8 HOH *115(H2 O) HELIX 1 AA1 ASP A -22 ASN A -13 1 10 HELIX 2 AA2 HIS A 249 ILE A 262 1 14 HELIX 3 AA3 CYS A 280 HIS A 294 1 15 HELIX 4 AA4 ASP A 311 GLU A 324 1 14 HELIX 5 AA5 GLY A 332 VAL A 344 1 13 HELIX 6 AA6 GLY A 356 GLU A 373 1 18 HELIX 7 AA7 ASP B -22 ASN B -13 1 10 HELIX 8 AA8 HIS B 249 ILE B 262 1 14 HELIX 9 AA9 CYS B 280 HIS B 294 1 15 HELIX 10 AB1 ASP B 311 GLU B 324 1 14 HELIX 11 AB2 GLY B 332 PHE B 343 1 12 HELIX 12 AB3 GLY B 356 GLU B 373 1 18 SHEET 1 AA1 6 PHE A -28 GLN A -27 0 SHEET 2 AA1 6 SER A 232 PHE A 238 1 O ARG A 235 N GLN A -27 SHEET 3 AA1 6 LEU A 218 LYS A 226 -1 N VAL A 224 O SER A 232 SHEET 4 AA1 6 THR A 267 TRP A 277 -1 O ASN A 268 N VAL A 225 SHEET 5 AA1 6 VAL A 297 ARG A 305 1 O ASN A 298 N VAL A 271 SHEET 6 AA1 6 SER A 327 ILE A 330 1 O SER A 327 N ILE A 301 SHEET 1 AA2 6 PHE B -28 GLN B -27 0 SHEET 2 AA2 6 SER B 232 PHE B 238 1 O ARG B 235 N GLN B -27 SHEET 3 AA2 6 LEU B 218 LYS B 226 -1 N LEU B 218 O PHE B 238 SHEET 4 AA2 6 THR B 267 TRP B 277 -1 O ASN B 268 N VAL B 225 SHEET 5 AA2 6 VAL B 297 ARG B 305 1 O THR B 300 N TRP B 273 SHEET 6 AA2 6 SER B 327 ILE B 330 1 O SER B 327 N ILE B 301 SSBOND 1 CYS B 248 CYS B 253 1555 1555 2.42 LINK ND1 HIS A 249 ZN ZN A 401 1555 1555 2.20 LINK SG CYS A 280 ZN ZN A 401 1555 1555 2.38 LINK SG CYS A 283 ZN ZN A 401 1555 1555 2.21 LINK ND1 HIS B 249 ZN ZN B 401 1555 1555 2.09 LINK SG CYS B 280 ZN ZN B 401 1555 1555 2.27 LINK SG CYS B 283 ZN ZN B 401 1555 1555 2.18 LINK ZN ZN A 401 O1 CAC A 402 1555 1555 2.25 LINK ZN ZN B 401 O1 CAC B 402 1555 1555 2.11 SITE 1 AC1 4 HIS A 249 CYS A 280 CYS A 283 CAC A 402 SITE 1 AC2 9 THR A -2 ASN A 240 HIS A 249 GLU A 251 SITE 2 AC2 9 TRP A 277 SER A 278 PRO A 279 CYS A 280 SITE 3 AC2 9 ZN A 401 SITE 1 AC3 4 HIS B 249 CYS B 280 CYS B 283 CAC B 402 SITE 1 AC4 9 THR B -2 ASN B 240 HIS B 249 GLU B 251 SITE 2 AC4 9 TRP B 277 SER B 278 CYS B 280 CYS B 283 SITE 3 AC4 9 ZN B 401 CRYST1 61.312 91.304 91.354 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010946 0.00000