HEADER STRUCTURAL PROTEIN/DNA 09-MAY-18 5ZVB TITLE APOBEC3F CHIMERIC CATALYTIC DOMAIN IN COMPLEX WITH DNA(DT9) COMPND MOL_ID: 1; COMPND 2 MOLECULE: APEBEC3F/SSDNA-T9; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APOBEC-RELATED CYTIDINE DEAMINASE,ARCD,APOBEC-RELATED COMPND 5 PROTEIN 9,ARP-9,CEM-15,CEM15,DEOXYCYTIDINE DEAMINASE,A3G, COMPND 6 APOLIPOPROTEIN B MRNA-EDITING ENZYME CATALYTIC POLYPEPTIDE-LIKE 3F, COMPND 7 A3F; COMPND 8 EC: 3.5.4.-,3.5.4.-; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: ALL RESIDURES INCLUDES PURIFICATION TAG OF COMPND 11 A3F(6HIS+THROMBIN CLEAVAGE TAG+ CHIMERIC A3F)(REFERENCE: K. SIU, ET COMPND 12 AL. NAT. COMMUN. 2013, 4, 2593. PDB CODE:4J4J); COMPND 13 MOL_ID: 2; COMPND 14 MOLECULE: DNA (5'-D(*AP*TP*TP*TP*TP*CP*AP*AP*T)-3'); COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: CHEMICALLY SYNTHESIZED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APOBEC3G, MDS019, APOBEC3F; SOURCE 6 EXPRESSION_SYSTEM: PROKARYOTIC ENVIRONMENTAL SAMPLES; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 81490; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: DNA-BINDING VECTOR PODB80; SOURCE 11 ORGANISM_TAXID: 62978 KEYWDS APOBEC3F, HIV-1, DEAMINATION, STRUCTURAL PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.CHENG,T.L.ZHANG,C.X.WANG,W.X.LAN,J.P.DING,C.Y.CAO REVDAT 2 28-NOV-18 5ZVB 1 TITLE COMPND JRNL REVDAT 1 21-NOV-18 5ZVB 0 JRNL AUTH C.CHENG,T.ZHANG,C.WANG,W.LAN,J.DING,C.CAO JRNL TITL CRYSTAL STRUCTURE OF CYTIDINE DEAMINASE HUMAN APOBEC3F JRNL TITL 2 CHIMERIC CATALYTIC DOMAIN IN COMPLEX WITH DNA JRNL REF CHIN.J.CHEM. V. 36 1241 2018 JRNL REFN ISSN 1001-604X JRNL DOI 10.1002/CJOC.201800508 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.0520 - 2.0000 0.98 2473 146 0.2130 0.2830 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.104 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.80000 REMARK 3 B22 (A**2) : -0.74000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -29 THROUGH 373 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9342 -5.7513 4.3955 REMARK 3 T TENSOR REMARK 3 T11: 0.0054 T22: 0.0265 REMARK 3 T33: 0.0749 T12: -0.0069 REMARK 3 T13: 0.0040 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.0998 L22: 0.1712 REMARK 3 L33: 0.1388 L12: -0.0933 REMARK 3 L13: 0.0195 L23: 0.0877 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: 0.0128 S13: -0.0009 REMARK 3 S21: -0.0034 S22: -0.0161 S23: -0.0057 REMARK 3 S31: 0.0135 S32: -0.0026 S33: 0.0026 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -29 THROUGH 373 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6422 -28.0001 -29.2034 REMARK 3 T TENSOR REMARK 3 T11: 0.0174 T22: 0.0165 REMARK 3 T33: 0.0713 T12: -0.0092 REMARK 3 T13: 0.0013 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.0163 L22: 0.0632 REMARK 3 L33: 0.5197 L12: 0.0101 REMARK 3 L13: 0.0814 L23: 0.0936 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: -0.0073 S13: 0.0016 REMARK 3 S21: 0.0071 S22: -0.0045 S23: -0.0240 REMARK 3 S31: 0.0579 S32: -0.0118 S33: -0.0113 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2507 -26.6526 -13.0634 REMARK 3 T TENSOR REMARK 3 T11: 0.0257 T22: 0.0286 REMARK 3 T33: 0.1055 T12: -0.0091 REMARK 3 T13: -0.0082 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.2870 L22: 0.2872 REMARK 3 L33: 0.1771 L12: -0.2868 REMARK 3 L13: 0.2221 L23: -0.2232 REMARK 3 S TENSOR REMARK 3 S11: -0.0327 S12: -0.0475 S13: 0.0141 REMARK 3 S21: 0.0292 S22: 0.0425 S23: -0.0061 REMARK 3 S31: -0.0185 S32: -0.0423 S33: -0.0098 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5ZVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300007697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADDREF REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37457 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.66200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M SODIUM CACODYLATE, PH 6.5, AND REMARK 280 30%(V/V) 2-METHYL-2,4-PENTANEDIOL (MPD), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.49500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.83700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.35100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.83700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.49500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.35100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -53 REMARK 465 ALA A -52 REMARK 465 HIS A -51 REMARK 465 HIS A -50 REMARK 465 HIS A -49 REMARK 465 HIS A -48 REMARK 465 HIS A -47 REMARK 465 HIS A -46 REMARK 465 VAL A -45 REMARK 465 ASP A -44 REMARK 465 ASP A -43 REMARK 465 ASP A -42 REMARK 465 ASP A -41 REMARK 465 LYS A -40 REMARK 465 MSE A -39 REMARK 465 LEU A -38 REMARK 465 VAL A -37 REMARK 465 PRO A -36 REMARK 465 ARG A -35 REMARK 465 GLY A -34 REMARK 465 SER A -33 REMARK 465 GLU A -32 REMARK 465 ASN A -31 REMARK 465 LEU A -30 REMARK 465 VAL A 242 REMARK 465 ASP A 243 REMARK 465 PRO A 244 REMARK 465 GLU A 245 REMARK 465 THR A 246 REMARK 465 MSE B -53 REMARK 465 ALA B -52 REMARK 465 HIS B -51 REMARK 465 HIS B -50 REMARK 465 HIS B -49 REMARK 465 HIS B -48 REMARK 465 HIS B -47 REMARK 465 HIS B -46 REMARK 465 VAL B -45 REMARK 465 ASP B -44 REMARK 465 ASP B -43 REMARK 465 ASP B -42 REMARK 465 ASP B -41 REMARK 465 LYS B -40 REMARK 465 MSE B -39 REMARK 465 LEU B -38 REMARK 465 VAL B -37 REMARK 465 PRO B -36 REMARK 465 ARG B -35 REMARK 465 GLY B -34 REMARK 465 SER B -33 REMARK 465 GLU B -32 REMARK 465 ASN B -31 REMARK 465 LEU B -30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 241 CG CD OE1 NE2 REMARK 470 GLU B 245 CG CD OE1 OE2 REMARK 470 THR B 246 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 266 49.06 -100.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 249 ND1 REMARK 620 2 CYS A 280 SG 112.5 REMARK 620 3 CYS A 283 SG 106.4 123.7 REMARK 620 4 CAC A 402 O1 91.6 109.6 108.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 249 ND1 REMARK 620 2 CYS B 280 SG 100.9 REMARK 620 3 CYS B 283 SG 103.6 121.4 REMARK 620 4 CAC B 402 O1 119.2 93.6 117.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC B 402 DBREF 5ZVB A -23 -1 UNP Q9HC16 ABC3G_HUMAN 197 219 DBREF 5ZVB A 218 373 UNP Q8IUX4 ABC3F_HUMAN 218 373 DBREF 5ZVB B -23 -1 UNP Q9HC16 ABC3G_HUMAN 197 219 DBREF 5ZVB B 218 373 UNP Q8IUX4 ABC3F_HUMAN 218 373 DBREF 5ZVB C 1 9 PDB 5ZVB 5ZVB 1 9 SEQADV 5ZVB MSE A -53 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB ALA A -52 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB HIS A -51 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB HIS A -50 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB HIS A -49 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB HIS A -48 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB HIS A -47 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB HIS A -46 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB VAL A -45 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB ASP A -44 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB ASP A -43 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB ASP A -42 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB ASP A -41 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB LYS A -40 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB MSE A -39 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB LEU A -38 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB VAL A -37 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB PRO A -36 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB ARG A -35 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB GLY A -34 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB SER A -33 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB GLU A -32 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB ASN A -31 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB LEU A -30 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB TYR A -29 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB PHE A -28 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB GLN A -27 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB GLY A -26 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB SER A -25 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB ALA A -24 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB MSE B -53 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB ALA B -52 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB HIS B -51 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB HIS B -50 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB HIS B -49 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB HIS B -48 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB HIS B -47 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB HIS B -46 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB VAL B -45 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB ASP B -44 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB ASP B -43 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB ASP B -42 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB ASP B -41 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB LYS B -40 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB MSE B -39 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB LEU B -38 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB VAL B -37 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB PRO B -36 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB ARG B -35 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB GLY B -34 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB SER B -33 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB GLU B -32 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB ASN B -31 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB LEU B -30 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB TYR B -29 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB PHE B -28 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB GLN B -27 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB GLY B -26 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB SER B -25 UNP Q9HC16 EXPRESSION TAG SEQADV 5ZVB ALA B -24 UNP Q9HC16 EXPRESSION TAG SEQRES 1 A 209 MSE ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 209 LYS MSE LEU VAL PRO ARG GLY SER GLU ASN LEU TYR PHE SEQRES 3 A 209 GLN GLY SER ALA MSE ASP PRO PRO THR PHE THR PHE ASN SEQRES 4 A 209 PHE ASN ASN GLU PRO TRP VAL ARG GLY ARG HIS GLU THR SEQRES 5 A 209 TYR LEU CYS PHE THR MSE GLU VAL VAL LYS HIS HIS SER SEQRES 6 A 209 PRO VAL SER TRP LYS ARG GLY VAL PHE ARG ASN GLN VAL SEQRES 7 A 209 ASP PRO GLU THR HIS CYS HIS ALA GLU ARG CYS PHE LEU SEQRES 8 A 209 SER TRP PHE CYS ASP ASP ILE LEU SER PRO ASN THR ASN SEQRES 9 A 209 TYR GLU VAL THR TRP TYR THR SER TRP SER PRO CYS PRO SEQRES 10 A 209 GLU CYS ALA GLY GLU VAL ALA GLU PHE LEU ALA ARG HIS SEQRES 11 A 209 SER ASN VAL ASN LEU THR ILE PHE THR ALA ARG LEU TYR SEQRES 12 A 209 TYR PHE TRP ASP THR ASP TYR GLN GLU GLY LEU ARG SER SEQRES 13 A 209 LEU SER GLN GLU GLY ALA SER VAL GLU ILE MSE GLY TYR SEQRES 14 A 209 LYS ASP PHE LYS TYR CYS TRP GLU ASN PHE VAL TYR ASN SEQRES 15 A 209 ASP ASP GLU PRO PHE LYS PRO TRP LYS GLY LEU LYS TYR SEQRES 16 A 209 ASN PHE LEU PHE LEU ASP SER LYS LEU GLN GLU ILE LEU SEQRES 17 A 209 GLU SEQRES 1 B 209 MSE ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 B 209 LYS MSE LEU VAL PRO ARG GLY SER GLU ASN LEU TYR PHE SEQRES 3 B 209 GLN GLY SER ALA MSE ASP PRO PRO THR PHE THR PHE ASN SEQRES 4 B 209 PHE ASN ASN GLU PRO TRP VAL ARG GLY ARG HIS GLU THR SEQRES 5 B 209 TYR LEU CYS PHE THR MSE GLU VAL VAL LYS HIS HIS SER SEQRES 6 B 209 PRO VAL SER TRP LYS ARG GLY VAL PHE ARG ASN GLN VAL SEQRES 7 B 209 ASP PRO GLU THR HIS CYS HIS ALA GLU ARG CYS PHE LEU SEQRES 8 B 209 SER TRP PHE CYS ASP ASP ILE LEU SER PRO ASN THR ASN SEQRES 9 B 209 TYR GLU VAL THR TRP TYR THR SER TRP SER PRO CYS PRO SEQRES 10 B 209 GLU CYS ALA GLY GLU VAL ALA GLU PHE LEU ALA ARG HIS SEQRES 11 B 209 SER ASN VAL ASN LEU THR ILE PHE THR ALA ARG LEU TYR SEQRES 12 B 209 TYR PHE TRP ASP THR ASP TYR GLN GLU GLY LEU ARG SER SEQRES 13 B 209 LEU SER GLN GLU GLY ALA SER VAL GLU ILE MSE GLY TYR SEQRES 14 B 209 LYS ASP PHE LYS TYR CYS TRP GLU ASN PHE VAL TYR ASN SEQRES 15 B 209 ASP ASP GLU PRO PHE LYS PRO TRP LYS GLY LEU LYS TYR SEQRES 16 B 209 ASN PHE LEU PHE LEU ASP SER LYS LEU GLN GLU ILE LEU SEQRES 17 B 209 GLU SEQRES 1 C 9 DA DT DT DT DT DC DA DA DT MODRES 5ZVB MSE A -23 MET MODIFIED RESIDUE MODRES 5ZVB MSE A 222 MET MODIFIED RESIDUE MODRES 5ZVB MSE A 331 MET MODIFIED RESIDUE MODRES 5ZVB MSE B -23 MET MODIFIED RESIDUE MODRES 5ZVB MSE B 222 MET MODIFIED RESIDUE MODRES 5ZVB MSE B 331 MET MODIFIED RESIDUE HET MSE A -23 8 HET MSE A 222 8 HET MSE A 331 8 HET MSE B -23 8 HET MSE B 222 8 HET MSE B 331 8 HET ZN A 401 1 HET CAC A 402 5 HET ZN B 401 1 HET CAC B 402 5 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 CAC 2(C2 H6 AS O2 1-) FORMUL 8 HOH *211(H2 O) HELIX 1 AA1 ASP A -22 ASN A -13 1 10 HELIX 2 AA2 HIS A 249 ILE A 262 1 14 HELIX 3 AA3 CYS A 280 HIS A 294 1 15 HELIX 4 AA4 ASP A 311 GLU A 324 1 14 HELIX 5 AA5 GLY A 332 PHE A 343 1 12 HELIX 6 AA6 GLY A 356 GLU A 373 1 18 HELIX 7 AA7 ASP B -22 ASN B -13 1 10 HELIX 8 AA8 HIS B 249 ILE B 262 1 14 HELIX 9 AA9 CYS B 280 HIS B 294 1 15 HELIX 10 AB1 ASP B 311 GLU B 324 1 14 HELIX 11 AB2 GLY B 332 PHE B 343 1 12 HELIX 12 AB3 GLY B 356 GLU B 373 1 18 SHEET 1 AA1 6 PHE A -28 GLN A -27 0 SHEET 2 AA1 6 SER A 232 ARG A 239 1 O ARG A 235 N GLN A -27 SHEET 3 AA1 6 TYR A -1 LYS A 226 -1 N VAL A 224 O SER A 232 SHEET 4 AA1 6 THR A 267 TRP A 277 -1 O THR A 272 N THR A 221 SHEET 5 AA1 6 VAL A 297 ARG A 305 1 O ASN A 298 N VAL A 271 SHEET 6 AA1 6 SER A 327 ILE A 330 1 O SER A 327 N ILE A 301 SHEET 1 AA2 6 PHE B -28 GLN B -27 0 SHEET 2 AA2 6 SER B 232 ARG B 239 1 O ARG B 235 N GLN B -27 SHEET 3 AA2 6 TYR B -1 VAL B 225 -1 N VAL B 224 O SER B 232 SHEET 4 AA2 6 ASN B 268 TRP B 277 -1 O TYR B 274 N CYS B 219 SHEET 5 AA2 6 VAL B 297 ARG B 305 1 O ASN B 298 N VAL B 271 SHEET 6 AA2 6 SER B 327 ILE B 330 1 O SER B 327 N ILE B 301 SSBOND 1 CYS B 248 CYS B 253 1555 1555 2.41 LINK C ALA A -24 N MSE A -23 1555 1555 1.33 LINK C MSE A -23 N ASP A -22 1555 1555 1.33 LINK C THR A 221 N MSE A 222 1555 1555 1.32 LINK C MSE A 222 N GLU A 223 1555 1555 1.33 LINK ND1 HIS A 249 ZN ZN A 401 1555 1555 2.19 LINK SG CYS A 280 ZN ZN A 401 1555 1555 2.21 LINK SG CYS A 283 ZN ZN A 401 1555 1555 2.22 LINK C ILE A 330 N MSE A 331 1555 1555 1.34 LINK C MSE A 331 N GLY A 332 1555 1555 1.32 LINK C ALA B -24 N MSE B -23 1555 1555 1.34 LINK C MSE B -23 N ASP B -22 1555 1555 1.34 LINK C THR B 221 N MSE B 222 1555 1555 1.32 LINK C MSE B 222 N GLU B 223 1555 1555 1.33 LINK ND1 HIS B 249 ZN ZN B 401 1555 1555 2.15 LINK SG CYS B 280 ZN ZN B 401 1555 1555 2.20 LINK SG CYS B 283 ZN ZN B 401 1555 1555 2.20 LINK C ILE B 330 N MSE B 331 1555 1555 1.33 LINK C MSE B 331 N GLY B 332 1555 1555 1.33 LINK ZN ZN A 401 O1 CAC A 402 1555 1555 2.17 LINK ZN ZN B 401 O1 CAC B 402 1555 1555 2.18 SITE 1 AC1 4 HIS A 249 CYS A 280 CYS A 283 CAC A 402 SITE 1 AC2 8 THR A -2 ASN A 240 HIS A 249 GLU A 251 SITE 2 AC2 8 SER A 278 CYS A 280 CYS A 283 ZN A 401 SITE 1 AC3 4 HIS B 249 CYS B 280 CYS B 283 CAC B 402 SITE 1 AC4 11 THR B -2 ASN B 240 HIS B 249 GLU B 251 SITE 2 AC4 11 TRP B 277 SER B 278 PRO B 279 CYS B 280 SITE 3 AC4 11 TYR B 307 ZN B 401 DT C 9 CRYST1 60.990 92.702 93.674 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016396 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010675 0.00000