HEADER HYDROLASE 10-MAY-18 5ZVJ TITLE CRYSTAL STRUCTURE OF HTRA1 FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.-,3.4.21.107; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: HTRA, SAMEA2682835_04373; SOURCE 5 EXPRESSION_SYSTEM: MYCOBACTERIUM SMEGMATIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1772 KEYWDS HTRA, MYCOBACTERIUM, PDZ, PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.S.KHUNDRAKPAM,S.YADAV,D.KUMAR,B.K.BISWAL REVDAT 4 22-NOV-23 5ZVJ 1 REMARK REVDAT 3 25-DEC-19 5ZVJ 1 JRNL REVDAT 2 19-SEP-18 5ZVJ 1 JRNL REVDAT 1 05-SEP-18 5ZVJ 0 SPRSDE 05-SEP-18 5ZVJ 5XDY JRNL AUTH K.H.SINGH,S.YADAV,D.KUMAR,B.K.BISWAL JRNL TITL THE CRYSTAL STRUCTURE OF AN ESSENTIAL HIGH-TEMPERATURE JRNL TITL 2 REQUIREMENT PROTEIN HTRA1 (RV1223) FROM MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS REVEALS ITS UNIQUE FEATURES. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 74 906 2018 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 30198900 JRNL DOI 10.1107/S205979831800952X REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 11881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.500 REMARK 3 FREE R VALUE TEST SET COUNT : 692 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 921 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2132 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.10000 REMARK 3 B22 (A**2) : -3.10000 REMARK 3 B33 (A**2) : 10.07000 REMARK 3 B12 (A**2) : -1.55000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.477 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.305 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.238 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.301 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2167 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2956 ; 1.707 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 6.456 ; 5.033 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;42.459 ;25.570 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 339 ;17.992 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.498 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 368 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1613 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1197 ; 2.553 ; 5.184 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1492 ; 4.475 ; 7.764 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 970 ; 2.786 ; 5.388 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3007 ; 8.094 ;71.702 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5ZVJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300007729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12591 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 42.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 0.77900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1Y8T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PEG2000, ETHANOL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.92600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.92600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.92600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 205 REMARK 465 VAL A 206 REMARK 465 ASP A 207 REMARK 465 ALA A 208 REMARK 465 PHE A 209 REMARK 465 THR A 210 REMARK 465 THR A 211 REMARK 465 SER A 212 REMARK 465 LYS A 213 REMARK 465 VAL A 214 REMARK 465 THR A 215 REMARK 465 LEU A 216 REMARK 465 SER A 217 REMARK 465 THR A 218 REMARK 465 THR A 219 REMARK 465 GLY A 220 REMARK 465 ASN A 221 REMARK 465 ALA A 222 REMARK 465 GLY A 405 REMARK 465 LYS A 406 REMARK 465 SER A 407 REMARK 465 LEU A 408 REMARK 465 SER A 409 REMARK 465 ASP A 410 REMARK 465 SER A 411 REMARK 465 ALA A 412 REMARK 465 SER A 413 REMARK 465 ALA A 531 REMARK 465 ALA A 532 REMARK 465 ALA A 533 REMARK 465 LEU A 534 REMARK 465 GLU A 535 REMARK 465 HIS A 536 REMARK 465 HIS A 537 REMARK 465 HIS A 538 REMARK 465 HIS A 539 REMARK 465 HIS A 540 REMARK 465 HIS A 541 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 223 CG CD OE1 NE2 REMARK 470 GLU A 224 CG CD OE1 OE2 REMARK 470 GLN A 249 CD OE1 NE2 REMARK 470 GLU A 250 CD OE1 OE2 REMARK 470 GLU A 274 CG CD OE1 OE2 REMARK 470 LYS A 283 CD CE NZ REMARK 470 LYS A 292 CE NZ REMARK 470 GLU A 365 CB CG CD OE1 OE2 REMARK 470 SER A 367 OG REMARK 470 THR A 369 CB OG1 CG2 REMARK 470 VAL A 511 CG1 CG2 REMARK 470 GLU A 513 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 281 C - N - CA ANGL. DEV. = 19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 249 -79.45 -106.95 REMARK 500 THR A 403 -54.66 -128.33 REMARK 500 GLU A 513 5.25 50.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 785 DISTANCE = 7.18 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 601 DBREF1 5ZVJ A 206 528 UNP A0A1K3KH35_MYCTX DBREF2 5ZVJ A A0A1K3KH35 196 518 SEQADV 5ZVJ MET A 205 UNP A0A1K3KH3 EXPRESSION TAG SEQADV 5ZVJ ALA A 387 UNP A0A1K3KH3 SER 377 ENGINEERED MUTATION SEQADV 5ZVJ LYS A 529 UNP A0A1K3KH3 EXPRESSION TAG SEQADV 5ZVJ LEU A 530 UNP A0A1K3KH3 EXPRESSION TAG SEQADV 5ZVJ ALA A 531 UNP A0A1K3KH3 EXPRESSION TAG SEQADV 5ZVJ ALA A 532 UNP A0A1K3KH3 EXPRESSION TAG SEQADV 5ZVJ ALA A 533 UNP A0A1K3KH3 EXPRESSION TAG SEQADV 5ZVJ LEU A 534 UNP A0A1K3KH3 EXPRESSION TAG SEQADV 5ZVJ GLU A 535 UNP A0A1K3KH3 EXPRESSION TAG SEQADV 5ZVJ HIS A 536 UNP A0A1K3KH3 EXPRESSION TAG SEQADV 5ZVJ HIS A 537 UNP A0A1K3KH3 EXPRESSION TAG SEQADV 5ZVJ HIS A 538 UNP A0A1K3KH3 EXPRESSION TAG SEQADV 5ZVJ HIS A 539 UNP A0A1K3KH3 EXPRESSION TAG SEQADV 5ZVJ HIS A 540 UNP A0A1K3KH3 EXPRESSION TAG SEQADV 5ZVJ HIS A 541 UNP A0A1K3KH3 EXPRESSION TAG SEQRES 1 A 337 MET VAL ASP ALA PHE THR THR SER LYS VAL THR LEU SER SEQRES 2 A 337 THR THR GLY ASN ALA GLN GLU PRO ALA GLY ARG PHE THR SEQRES 3 A 337 LYS VAL ALA ALA ALA VAL ALA ASP SER VAL VAL THR ILE SEQRES 4 A 337 GLU SER VAL SER ASP GLN GLU GLY MET GLN GLY SER GLY SEQRES 5 A 337 VAL ILE VAL ASP GLY ARG GLY TYR ILE VAL THR ASN ASN SEQRES 6 A 337 HIS VAL ILE SER GLU ALA ALA ASN ASN PRO SEP GLN PHE SEQRES 7 A 337 LYS THR THR VAL VAL PHE ASN ASP GLY LYS GLU VAL PRO SEQRES 8 A 337 ALA ASN LEU VAL GLY ARG ASP PRO LYS THR ASP LEU ALA SEQRES 9 A 337 VAL LEU LYS VAL ASP ASN VAL ASP ASN LEU THR VAL ALA SEQRES 10 A 337 ARG LEU GLY ASP SER SER LYS VAL ARG VAL GLY ASP GLU SEQRES 11 A 337 VAL LEU ALA VAL GLY ALA PRO LEU GLY LEU ARG SER THR SEQRES 12 A 337 VAL THR GLN GLY ILE VAL SER ALA LEU HIS ARG PRO VAL SEQRES 13 A 337 PRO LEU SER GLY GLU GLY SER ASP THR ASP THR VAL ILE SEQRES 14 A 337 ASP ALA ILE GLN THR ASP ALA SER ILE ASN HIS GLY ASN SEQRES 15 A 337 ALA GLY GLY PRO LEU ILE ASP MET ASP ALA GLN VAL ILE SEQRES 16 A 337 GLY ILE ASN THR ALA GLY LYS SER LEU SER ASP SER ALA SEQRES 17 A 337 SER GLY LEU GLY PHE ALA ILE PRO VAL ASN GLU MET LYS SEQRES 18 A 337 LEU VAL ALA ASN SER LEU ILE LYS ASP GLY LYS ILE VAL SEQRES 19 A 337 HIS PRO THR LEU GLY ILE SER THR ARG SER VAL SER ASN SEQRES 20 A 337 ALA ILE ALA SER GLY ALA GLN VAL ALA ASN VAL LYS ALA SEQRES 21 A 337 GLY SER PRO ALA GLN LYS GLY GLY ILE LEU GLU ASN ASP SEQRES 22 A 337 VAL ILE VAL LYS VAL GLY ASN ARG ALA VAL ALA ASP SER SEQRES 23 A 337 ASP GLU PHE VAL VAL ALA VAL ARG GLN LEU ALA ILE GLY SEQRES 24 A 337 GLN ASP ALA PRO ILE GLU VAL VAL ARG GLU GLY ARG HIS SEQRES 25 A 337 VAL THR LEU THR VAL LYS PRO ASP PRO ASP SER THR LYS SEQRES 26 A 337 LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS MODRES 5ZVJ SEP A 280 SER MODIFIED RESIDUE HET SEP A 280 10 HET TRS A 601 8 HETNAM SEP PHOSPHOSERINE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN SEP PHOSPHONOSERINE HETSYN TRS TRIS BUFFER FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 HOH *85(H2 O) HELIX 1 AA1 GLY A 227 ALA A 237 1 11 HELIX 2 AA2 ASN A 268 ASN A 278 1 11 HELIX 3 AA3 ASP A 325 VAL A 329 5 5 HELIX 4 AA4 VAL A 421 GLY A 435 1 15 HELIX 5 AA5 ASP A 489 LEU A 500 1 12 SHEET 1 AA1 7 GLU A 293 PRO A 295 0 SHEET 2 AA1 7 LYS A 283 VAL A 287 -1 N VAL A 286 O VAL A 294 SHEET 3 AA1 7 VAL A 240 VAL A 246 -1 N GLU A 244 O THR A 285 SHEET 4 AA1 7 GLY A 251 ASP A 260 -1 O GLY A 256 N VAL A 241 SHEET 5 AA1 7 TYR A 264 THR A 267 -1 O VAL A 266 N VAL A 257 SHEET 6 AA1 7 LEU A 307 LYS A 311 -1 O LEU A 310 N ILE A 265 SHEET 7 AA1 7 ASN A 297 ASP A 302 -1 N ASP A 302 O LEU A 307 SHEET 1 AA2 7 GLU A 334 VAL A 338 0 SHEET 2 AA2 7 VAL A 348 LEU A 362 -1 O GLY A 351 N VAL A 335 SHEET 3 AA2 7 THR A 371 THR A 378 -1 O THR A 371 N LEU A 362 SHEET 4 AA2 7 GLY A 416 PRO A 420 -1 O GLY A 416 N THR A 378 SHEET 5 AA2 7 VAL A 398 ASN A 402 -1 N ILE A 401 O ILE A 419 SHEET 6 AA2 7 PRO A 390 ILE A 392 -1 N LEU A 391 O GLY A 400 SHEET 7 AA2 7 GLU A 334 VAL A 338 -1 N LEU A 336 O ILE A 392 SHEET 1 AA3 2 PRO A 440 THR A 441 0 SHEET 2 AA3 2 ASP A 524 PRO A 525 -1 O ASP A 524 N THR A 441 SHEET 1 AA4 4 ILE A 444 SER A 448 0 SHEET 2 AA4 4 ALA A 457 VAL A 462 -1 O GLN A 458 N ARG A 447 SHEET 3 AA4 4 VAL A 478 VAL A 482 -1 O ILE A 479 N ALA A 457 SHEET 4 AA4 4 ARG A 485 ALA A 486 -1 O ARG A 485 N VAL A 482 SHEET 1 AA5 5 ILE A 444 SER A 448 0 SHEET 2 AA5 5 ALA A 457 VAL A 462 -1 O GLN A 458 N ARG A 447 SHEET 3 AA5 5 VAL A 478 VAL A 482 -1 O ILE A 479 N ALA A 457 SHEET 4 AA5 5 ALA A 506 ARG A 512 -1 O GLU A 509 N LYS A 481 SHEET 5 AA5 5 ARG A 515 VAL A 521 -1 O LEU A 519 N ILE A 508 LINK C PRO A 279 N SEP A 280 1555 1555 1.34 LINK C SEP A 280 N GLN A 281 1555 1555 1.33 SITE 1 AC1 5 SER A 326 SER A 327 HIS A 357 ASN A 422 SITE 2 AC1 5 HOH A 701 CRYST1 135.391 135.391 45.852 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007386 0.004264 0.000000 0.00000 SCALE2 0.000000 0.008529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021809 0.00000