data_5ZW4 # _entry.id 5ZW4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5ZW4 pdb_00005zw4 10.2210/pdb5zw4/pdb WWPDB D_1300006430 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5ZW4 _pdbx_database_status.recvd_initial_deposition_date 2018-05-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kim, J.' 1 ? 'Ryu, H.' 2 ? 'Almo, S.C.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 46 _citation.language ? _citation.page_first 9160 _citation.page_last 9169 _citation.title 'Identification of a novel tRNA wobble uridine modifying activity in the biosynthesis of 5-methoxyuridine.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gky592 _citation.pdbx_database_id_PubMed 29982645 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ryu, H.' 1 ? primary 'Grove, T.L.' 2 ? primary 'Almo, S.C.' 3 ? primary 'Kim, J.' 4 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 5ZW4 _cell.details ? _cell.formula_units_Z ? _cell.length_a 64.982 _cell.length_a_esd ? _cell.length_b 64.982 _cell.length_b_esd ? _cell.length_c 126.680 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZW4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative O-methyltransferase YrrM' 26041.781 1 2.1.1.- ? ? ? 2 polymer syn ;RNA (5'-R(*CP*CP*UP*GP*CP*UP*UP*UP*GP*CP*AP*CP*GP*CP*AP*GP*G)-3') ; 5395.237 1 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 non-polymer syn S-ADENOSYLMETHIONINE 398.437 1 ? ? ? ? 5 water nat water 18.015 162 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MTDRYEQINDYIEALLKPRPDNVKRLEAYAEEHHVPIMEKAGMEVLLQILSVKQPKKILEIGTAIGYSAIRMALELPSAE IYTIERNEKRHEEAVNNIKEFQLDDRIHVFYGDALELADAVHVTAPYDVIFIDAAKGQYQNFFHLYEPMLSPDGVIITDN VLFKGLVAEDYSKIEPKRRRRLVAKIDEYNHWLMNHPDYQTAIIPVGDGLAISKKKRGHHHHHHG ; ;MTDRYEQINDYIEALLKPRPDNVKRLEAYAEEHHVPIMEKAGMEVLLQILSVKQPKKILEIGTAIGYSAIRMALELPSAE IYTIERNEKRHEEAVNNIKEFQLDDRIHVFYGDALELADAVHVTAPYDVIFIDAAKGQYQNFFHLYEPMLSPDGVIITDN VLFKGLVAEDYSKIEPKRRRRLVAKIDEYNHWLMNHPDYQTAIIPVGDGLAISKKKRGHHHHHHG ; A ? 2 polyribonucleotide no no CCUGCUUUGCACGCAGG CCUGCUUUGCACGCAGG D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 ASP n 1 4 ARG n 1 5 TYR n 1 6 GLU n 1 7 GLN n 1 8 ILE n 1 9 ASN n 1 10 ASP n 1 11 TYR n 1 12 ILE n 1 13 GLU n 1 14 ALA n 1 15 LEU n 1 16 LEU n 1 17 LYS n 1 18 PRO n 1 19 ARG n 1 20 PRO n 1 21 ASP n 1 22 ASN n 1 23 VAL n 1 24 LYS n 1 25 ARG n 1 26 LEU n 1 27 GLU n 1 28 ALA n 1 29 TYR n 1 30 ALA n 1 31 GLU n 1 32 GLU n 1 33 HIS n 1 34 HIS n 1 35 VAL n 1 36 PRO n 1 37 ILE n 1 38 MET n 1 39 GLU n 1 40 LYS n 1 41 ALA n 1 42 GLY n 1 43 MET n 1 44 GLU n 1 45 VAL n 1 46 LEU n 1 47 LEU n 1 48 GLN n 1 49 ILE n 1 50 LEU n 1 51 SER n 1 52 VAL n 1 53 LYS n 1 54 GLN n 1 55 PRO n 1 56 LYS n 1 57 LYS n 1 58 ILE n 1 59 LEU n 1 60 GLU n 1 61 ILE n 1 62 GLY n 1 63 THR n 1 64 ALA n 1 65 ILE n 1 66 GLY n 1 67 TYR n 1 68 SER n 1 69 ALA n 1 70 ILE n 1 71 ARG n 1 72 MET n 1 73 ALA n 1 74 LEU n 1 75 GLU n 1 76 LEU n 1 77 PRO n 1 78 SER n 1 79 ALA n 1 80 GLU n 1 81 ILE n 1 82 TYR n 1 83 THR n 1 84 ILE n 1 85 GLU n 1 86 ARG n 1 87 ASN n 1 88 GLU n 1 89 LYS n 1 90 ARG n 1 91 HIS n 1 92 GLU n 1 93 GLU n 1 94 ALA n 1 95 VAL n 1 96 ASN n 1 97 ASN n 1 98 ILE n 1 99 LYS n 1 100 GLU n 1 101 PHE n 1 102 GLN n 1 103 LEU n 1 104 ASP n 1 105 ASP n 1 106 ARG n 1 107 ILE n 1 108 HIS n 1 109 VAL n 1 110 PHE n 1 111 TYR n 1 112 GLY n 1 113 ASP n 1 114 ALA n 1 115 LEU n 1 116 GLU n 1 117 LEU n 1 118 ALA n 1 119 ASP n 1 120 ALA n 1 121 VAL n 1 122 HIS n 1 123 VAL n 1 124 THR n 1 125 ALA n 1 126 PRO n 1 127 TYR n 1 128 ASP n 1 129 VAL n 1 130 ILE n 1 131 PHE n 1 132 ILE n 1 133 ASP n 1 134 ALA n 1 135 ALA n 1 136 LYS n 1 137 GLY n 1 138 GLN n 1 139 TYR n 1 140 GLN n 1 141 ASN n 1 142 PHE n 1 143 PHE n 1 144 HIS n 1 145 LEU n 1 146 TYR n 1 147 GLU n 1 148 PRO n 1 149 MET n 1 150 LEU n 1 151 SER n 1 152 PRO n 1 153 ASP n 1 154 GLY n 1 155 VAL n 1 156 ILE n 1 157 ILE n 1 158 THR n 1 159 ASP n 1 160 ASN n 1 161 VAL n 1 162 LEU n 1 163 PHE n 1 164 LYS n 1 165 GLY n 1 166 LEU n 1 167 VAL n 1 168 ALA n 1 169 GLU n 1 170 ASP n 1 171 TYR n 1 172 SER n 1 173 LYS n 1 174 ILE n 1 175 GLU n 1 176 PRO n 1 177 LYS n 1 178 ARG n 1 179 ARG n 1 180 ARG n 1 181 ARG n 1 182 LEU n 1 183 VAL n 1 184 ALA n 1 185 LYS n 1 186 ILE n 1 187 ASP n 1 188 GLU n 1 189 TYR n 1 190 ASN n 1 191 HIS n 1 192 TRP n 1 193 LEU n 1 194 MET n 1 195 ASN n 1 196 HIS n 1 197 PRO n 1 198 ASP n 1 199 TYR n 1 200 GLN n 1 201 THR n 1 202 ALA n 1 203 ILE n 1 204 ILE n 1 205 PRO n 1 206 VAL n 1 207 GLY n 1 208 ASP n 1 209 GLY n 1 210 LEU n 1 211 ALA n 1 212 ILE n 1 213 SER n 1 214 LYS n 1 215 LYS n 1 216 LYS n 1 217 ARG n 1 218 GLY n 1 219 HIS n 1 220 HIS n 1 221 HIS n 1 222 HIS n 1 223 HIS n 1 224 HIS n 1 225 GLY n 2 1 C n 2 2 C n 2 3 U n 2 4 G n 2 5 C n 2 6 U n 2 7 U n 2 8 U n 2 9 G n 2 10 C n 2 11 A n 2 12 C n 2 13 G n 2 14 C n 2 15 A n 2 16 G n 2 17 G n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 225 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'yrrM, BSU27360' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 168 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis (strain 168)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224308 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 17 _pdbx_entity_src_syn.organism_scientific 'Bacillus subtilis subsp. subtilis str. 168' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 224308 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP YRRM_BACSU O32036 ? 1 ;MTDRYEQINDYIEALLKPRPDNVKRLEAYAEEHHVPIMEKAGMEVLLQILSVKQPKKILEIGTAIGYSAIRMALELPSAE IYTIERNEKRHEEAVNNIKEFQLDDRIHVFYGDALELADAVHVTAPYDVIFIDAAKGQYQNFFHLYEPMLSPDGVIITDN VLFKGLVAEDYSKIEPKRRRRLVAKIDEYNHWLMNHPDYQTAIIPVGDGLAISKKKR ; 1 2 PDB 5ZW4 5ZW4 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5ZW4 A 1 ? 217 ? O32036 1 ? 217 ? 1 217 2 2 5ZW4 D 1 ? 17 ? 5ZW4 27 ? 43 ? 27 43 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5ZW4 GLY A 218 ? UNP O32036 ? ? 'expression tag' 218 1 1 5ZW4 HIS A 219 ? UNP O32036 ? ? 'expression tag' 219 2 1 5ZW4 HIS A 220 ? UNP O32036 ? ? 'expression tag' 220 3 1 5ZW4 HIS A 221 ? UNP O32036 ? ? 'expression tag' 221 4 1 5ZW4 HIS A 222 ? UNP O32036 ? ? 'expression tag' 222 5 1 5ZW4 HIS A 223 ? UNP O32036 ? ? 'expression tag' 223 6 1 5ZW4 HIS A 224 ? UNP O32036 ? ? 'expression tag' 224 7 1 5ZW4 GLY A 225 ? UNP O32036 ? ? 'expression tag' 225 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAM non-polymer . S-ADENOSYLMETHIONINE ? 'C15 H22 N6 O5 S' 398.437 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5ZW4 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.4 M Ammonium phosphate monobasic' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-09-24 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PAL/PLS BEAMLINE 7A (6B, 6C1)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline '7A (6B, 6C1)' _diffrn_source.pdbx_synchrotron_site PAL/PLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5ZW4 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.700 _reflns.d_resolution_low 50.01 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 32851 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 17.500 _reflns.pdbx_Rmerge_I_obs 0.090 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.200 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.718 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.093 _reflns.pdbx_Rpim_I_all 0.024 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.700 1.730 ? ? ? ? ? ? 1400 81.400 ? ? ? ? ? ? ? ? ? ? ? ? ? 9.500 ? 1.357 ? ? ? 0.677 ? 1 1 0.449 ? 1.730 1.760 ? ? ? ? ? ? 1455 83.500 ? ? ? ? ? ? ? ? ? ? ? ? ? 10.500 ? 1.398 ? ? ? 0.500 ? 2 1 0.556 ? 1.760 1.790 ? ? ? ? ? ? 1558 92.200 ? ? ? ? ? ? ? ? ? ? ? ? ? 11.300 ? 1.418 ? ? ? 0.410 ? 3 1 0.699 ? 1.790 1.830 ? ? ? ? ? ? 1643 96.100 ? ? ? ? ? ? ? ? ? ? ? ? ? 12.400 ? 1.450 ? ? ? 0.329 ? 4 1 0.741 ? 1.830 1.870 ? ? ? ? ? ? 1731 99.800 ? ? ? ? ? ? ? ? ? ? ? ? ? 13.900 ? 1.511 ? ? ? 0.285 ? 5 1 0.888 ? 1.870 1.910 ? ? ? ? ? ? 1715 99.900 ? ? ? ? ? ? ? ? ? ? ? ? ? 13.100 ? 2.169 ? ? ? 0.794 ? 6 1 0.938 ? 1.910 1.960 ? ? ? ? ? ? 1704 99.800 ? ? ? ? 0.805 ? ? ? ? ? ? ? ? 15.300 ? 2.562 ? ? 0.836 0.219 ? 7 1 0.971 ? 1.960 2.020 ? ? ? ? ? ? 1741 100.000 ? ? ? ? 0.509 ? ? ? ? ? ? ? ? 21.600 ? 1.704 ? ? 0.521 0.111 ? 8 1 0.984 ? 2.020 2.070 ? ? ? ? ? ? 1722 100.000 ? ? ? ? 0.325 ? ? ? ? ? ? ? ? 21.700 ? 1.664 ? ? 0.333 0.071 ? 9 1 0.990 ? 2.070 2.140 ? ? ? ? ? ? 1715 100.000 ? ? ? ? 0.270 ? ? ? ? ? ? ? ? 21.700 ? 1.688 ? ? 0.277 0.059 ? 10 1 0.993 ? 2.140 2.220 ? ? ? ? ? ? 1732 100.000 ? ? ? ? 0.269 ? ? ? ? ? ? ? ? 20.900 ? 1.879 ? ? 0.276 0.060 ? 11 1 0.994 ? 2.220 2.310 ? ? ? ? ? ? 959 55.500 ? ? ? ? 0.311 ? ? ? ? ? ? ? ? 12.400 ? 2.315 ? ? 0.325 0.087 ? 12 1 0.976 ? 2.310 2.410 ? ? ? ? ? ? 1754 100.000 ? ? ? ? 0.155 ? ? ? ? ? ? ? ? 21.500 ? 1.772 ? ? 0.159 0.034 ? 13 1 0.997 ? 2.410 2.540 ? ? ? ? ? ? 1731 100.000 ? ? ? ? 0.131 ? ? ? ? ? ? ? ? 21.400 ? 1.802 ? ? 0.134 0.029 ? 14 1 0.997 ? 2.540 2.700 ? ? ? ? ? ? 1771 100.000 ? ? ? ? 0.112 ? ? ? ? ? ? ? ? 21.200 ? 1.820 ? ? 0.114 0.025 ? 15 1 0.997 ? 2.700 2.910 ? ? ? ? ? ? 1737 100.000 ? ? ? ? 0.095 ? ? ? ? ? ? ? ? 21.000 ? 1.800 ? ? 0.098 0.021 ? 16 1 0.998 ? 2.910 3.200 ? ? ? ? ? ? 1765 100.000 ? ? ? ? 0.084 ? ? ? ? ? ? ? ? 20.400 ? 1.603 ? ? 0.086 0.019 ? 17 1 0.998 ? 3.200 3.660 ? ? ? ? ? ? 1590 89.200 ? ? ? ? 0.073 ? ? ? ? ? ? ? ? 19.000 ? 1.470 ? ? 0.075 0.017 ? 18 1 0.998 ? 3.660 4.610 ? ? ? ? ? ? 1558 86.400 ? ? ? ? 0.064 ? ? ? ? ? ? ? ? 18.300 ? 1.467 ? ? 0.066 0.015 ? 19 1 0.999 ? 4.610 50.000 ? ? ? ? ? ? 1870 97.300 ? ? ? ? 0.065 ? ? ? ? ? ? ? ? 17.000 ? 1.415 ? ? 0.067 0.016 ? 20 1 0.997 ? # _refine.aniso_B[1][1] 0.0800 _refine.aniso_B[1][2] 0.0400 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 0.0800 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -0.2500 _refine.B_iso_max 208.140 _refine.B_iso_mean 44.2550 _refine.B_iso_min 18.110 _refine.correlation_coeff_Fo_to_Fc 0.9660 _refine.correlation_coeff_Fo_to_Fc_free 0.9560 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5ZW4 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.7000 _refine.ls_d_res_low 50.0100 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 30082 _refine.ls_number_reflns_R_free 1613 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 90.8000 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1943 _refine.ls_R_factor_R_free 0.2223 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1928 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 2GPY _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1140 _refine.pdbx_overall_ESU_R_Free 0.1100 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 5.2430 _refine.overall_SU_ML 0.0820 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.7000 _refine_hist.d_res_low 50.0100 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 162 _refine_hist.number_atoms_total 2266 _refine_hist.pdbx_number_residues_total 232 _refine_hist.pdbx_B_iso_mean_ligand 34.87 _refine_hist.pdbx_B_iso_mean_solvent 45.99 _refine_hist.pdbx_number_atoms_protein 1755 _refine_hist.pdbx_number_atoms_nucleic_acid 317 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 0.018 2223 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.000 0.020 1904 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.003 1.859 3076 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.955 3.000 4434 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 7.561 6.254 295 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 36.947 24.022 92 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 17.420 15.000 332 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 24.105 15.000 14 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.160 0.202 340 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 0.020 2223 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 450 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.6990 _refine_ls_shell.d_res_low 1.7430 _refine_ls_shell.number_reflns_all 2081 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 95 _refine_ls_shell.number_reflns_R_work 1986 _refine_ls_shell.percent_reflns_obs 81.6700 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3380 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2950 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5ZW4 _struct.title 'Crystal structure of tRNA bound TrmR' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5ZW4 _struct_keywords.text 'transferase, RNA BINDING PROTEIN-RNA complex' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 3 ? LEU A 16 ? ASP A 3 LEU A 16 1 ? 14 HELX_P HELX_P2 AA2 PRO A 20 ? HIS A 33 ? PRO A 20 HIS A 33 1 ? 14 HELX_P HELX_P3 AA3 GLU A 39 ? GLN A 54 ? GLU A 39 GLN A 54 1 ? 16 HELX_P HELX_P4 AA4 GLY A 66 ? LEU A 76 ? GLY A 66 LEU A 76 1 ? 11 HELX_P HELX_P5 AA5 ASN A 87 ? PHE A 101 ? ASN A 87 PHE A 101 1 ? 15 HELX_P HELX_P6 AA6 ASP A 113 ? GLU A 116 ? ASP A 113 GLU A 116 5 ? 4 HELX_P HELX_P7 AA7 LEU A 117 ? VAL A 123 ? LEU A 117 VAL A 123 1 ? 7 HELX_P HELX_P8 AA8 ALA A 135 ? GLY A 137 ? ALA A 135 GLY A 137 5 ? 3 HELX_P HELX_P9 AA9 GLN A 138 ? GLU A 147 ? GLN A 138 GLU A 147 1 ? 10 HELX_P HELX_P10 AB1 LEU A 162 ? GLU A 169 ? LEU A 162 GLU A 169 5 ? 8 HELX_P HELX_P11 AB2 PRO A 176 ? HIS A 196 ? PRO A 176 HIS A 196 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B C 1 N3 ? ? ? 1_555 B G 17 N1 ? ? D C 27 D G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B C 1 N4 ? ? ? 1_555 B G 17 O6 ? ? D C 27 D G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B C 1 O2 ? ? ? 1_555 B G 17 N2 ? ? D C 27 D G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 16 N1 ? ? D C 28 D G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 16 O6 ? ? D C 28 D G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 16 N2 ? ? D C 28 D G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B U 3 N3 ? ? ? 1_555 B A 15 N1 ? ? D U 29 D A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B U 3 O4 ? ? ? 1_555 B A 15 N6 ? ? D U 29 D A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 14 N3 ? ? D G 30 D C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 14 O2 ? ? D G 30 D C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 14 N4 ? ? D G 30 D C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 13 N1 ? ? D C 31 D G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 13 O6 ? ? D C 31 D G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 13 N2 ? ? D C 31 D G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 125 A . ? ALA 125 A PRO 126 A ? PRO 126 A 1 4.48 2 GLU 175 A . ? GLU 175 A PRO 176 A ? PRO 176 A 1 -10.89 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 107 ? TYR A 111 ? ILE A 107 TYR A 111 AA1 2 GLU A 80 ? GLU A 85 ? GLU A 80 GLU A 85 AA1 3 LYS A 57 ? ILE A 61 ? LYS A 57 ILE A 61 AA1 4 TYR A 127 ? ILE A 132 ? TYR A 127 ILE A 132 AA1 5 LEU A 150 ? ASP A 159 ? LEU A 150 ASP A 159 AA1 6 LEU A 210 ? LYS A 215 ? LEU A 210 LYS A 215 AA1 7 TYR A 199 ? ILE A 204 ? TYR A 199 ILE A 204 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O PHE A 110 ? O PHE A 110 N THR A 83 ? N THR A 83 AA1 2 3 O TYR A 82 ? O TYR A 82 N GLU A 60 ? N GLU A 60 AA1 3 4 N LEU A 59 ? N LEU A 59 O PHE A 131 ? O PHE A 131 AA1 4 5 N ILE A 132 ? N ILE A 132 O ILE A 157 ? O ILE A 157 AA1 5 6 N ILE A 156 ? N ILE A 156 O SER A 213 ? O SER A 213 AA1 6 7 O LEU A 210 ? O LEU A 210 N ILE A 204 ? N ILE A 204 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PO4 301 ? 7 'binding site for residue PO4 A 301' AC2 Software A SAM 302 ? 21 'binding site for residue SAM A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ASP A 104 ? ASP A 104 . ? 1_555 ? 2 AC1 7 ILE A 107 ? ILE A 107 . ? 1_555 ? 3 AC1 7 HIS A 108 ? HIS A 108 . ? 1_555 ? 4 AC1 7 VAL A 109 ? VAL A 109 . ? 1_555 ? 5 AC1 7 HIS A 144 ? HIS A 144 . ? 6_454 ? 6 AC1 7 TRP A 192 ? TRP A 192 . ? 6_454 ? 7 AC1 7 HOH E . ? HOH A 433 . ? 1_555 ? 8 AC2 21 ILE A 37 ? ILE A 37 . ? 1_555 ? 9 AC2 21 MET A 38 ? MET A 38 . ? 1_555 ? 10 AC2 21 GLU A 60 ? GLU A 60 . ? 1_555 ? 11 AC2 21 GLY A 62 ? GLY A 62 . ? 1_555 ? 12 AC2 21 THR A 63 ? THR A 63 . ? 1_555 ? 13 AC2 21 ALA A 64 ? ALA A 64 . ? 1_555 ? 14 AC2 21 TYR A 67 ? TYR A 67 . ? 1_555 ? 15 AC2 21 SER A 68 ? SER A 68 . ? 1_555 ? 16 AC2 21 GLU A 85 ? GLU A 85 . ? 1_555 ? 17 AC2 21 ARG A 86 ? ARG A 86 . ? 1_555 ? 18 AC2 21 ARG A 90 ? ARG A 90 . ? 1_555 ? 19 AC2 21 GLY A 112 ? GLY A 112 . ? 1_555 ? 20 AC2 21 ASP A 113 ? ASP A 113 . ? 1_555 ? 21 AC2 21 ALA A 114 ? ALA A 114 . ? 1_555 ? 22 AC2 21 ASP A 133 ? ASP A 133 . ? 1_555 ? 23 AC2 21 ALA A 134 ? ALA A 134 . ? 1_555 ? 24 AC2 21 ALA A 135 ? ALA A 135 . ? 1_555 ? 25 AC2 21 PHE A 142 ? PHE A 142 . ? 1_555 ? 26 AC2 21 HOH E . ? HOH A 406 . ? 1_555 ? 27 AC2 21 HOH E . ? HOH A 474 . ? 1_555 ? 28 AC2 21 HOH E . ? HOH A 480 . ? 1_555 ? # _atom_sites.entry_id 5ZW4 _atom_sites.fract_transf_matrix[1][1] 0.015389 _atom_sites.fract_transf_matrix[1][2] 0.008885 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017770 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007894 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 ARG 4 4 4 ARG ARG A . n A 1 5 TYR 5 5 5 TYR TYR A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 HIS 33 33 33 HIS HIS A . n A 1 34 HIS 34 34 34 HIS HIS A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 MET 38 38 38 MET MET A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 MET 43 43 43 MET MET A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 MET 72 72 72 MET MET A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 HIS 91 91 91 HIS HIS A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 GLN 102 102 102 GLN GLN A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 ARG 106 106 106 ARG ARG A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 HIS 108 108 108 HIS HIS A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 PHE 110 110 110 PHE PHE A . n A 1 111 TYR 111 111 111 TYR TYR A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 HIS 122 122 122 HIS HIS A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 PRO 126 126 126 PRO PRO A . n A 1 127 TYR 127 127 127 TYR TYR A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 PHE 131 131 131 PHE PHE A . n A 1 132 ILE 132 132 132 ILE ILE A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 GLN 138 138 138 GLN GLN A . n A 1 139 TYR 139 139 139 TYR TYR A . n A 1 140 GLN 140 140 140 GLN GLN A . n A 1 141 ASN 141 141 141 ASN ASN A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 PHE 143 143 143 PHE PHE A . n A 1 144 HIS 144 144 144 HIS HIS A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 TYR 146 146 146 TYR TYR A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 PRO 148 148 148 PRO PRO A . n A 1 149 MET 149 149 149 MET MET A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 SER 151 151 151 SER SER A . n A 1 152 PRO 152 152 152 PRO PRO A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 GLY 154 154 154 GLY GLY A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 ILE 157 157 157 ILE ILE A . n A 1 158 THR 158 158 158 THR THR A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 ASN 160 160 160 ASN ASN A . n A 1 161 VAL 161 161 161 VAL VAL A . n A 1 162 LEU 162 162 162 LEU LEU A . n A 1 163 PHE 163 163 163 PHE PHE A . n A 1 164 LYS 164 164 164 LYS LYS A . n A 1 165 GLY 165 165 165 GLY GLY A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 VAL 167 167 167 VAL VAL A . n A 1 168 ALA 168 168 168 ALA ALA A . n A 1 169 GLU 169 169 169 GLU GLU A . n A 1 170 ASP 170 170 170 ASP ASP A . n A 1 171 TYR 171 171 171 TYR TYR A . n A 1 172 SER 172 172 172 SER SER A . n A 1 173 LYS 173 173 173 LYS LYS A . n A 1 174 ILE 174 174 174 ILE ILE A . n A 1 175 GLU 175 175 175 GLU GLU A . n A 1 176 PRO 176 176 176 PRO PRO A . n A 1 177 LYS 177 177 177 LYS LYS A . n A 1 178 ARG 178 178 178 ARG ARG A . n A 1 179 ARG 179 179 179 ARG ARG A . n A 1 180 ARG 180 180 180 ARG ARG A . n A 1 181 ARG 181 181 181 ARG ARG A . n A 1 182 LEU 182 182 182 LEU LEU A . n A 1 183 VAL 183 183 183 VAL VAL A . n A 1 184 ALA 184 184 184 ALA ALA A . n A 1 185 LYS 185 185 185 LYS LYS A . n A 1 186 ILE 186 186 186 ILE ILE A . n A 1 187 ASP 187 187 187 ASP ASP A . n A 1 188 GLU 188 188 188 GLU GLU A . n A 1 189 TYR 189 189 189 TYR TYR A . n A 1 190 ASN 190 190 190 ASN ASN A . n A 1 191 HIS 191 191 191 HIS HIS A . n A 1 192 TRP 192 192 192 TRP TRP A . n A 1 193 LEU 193 193 193 LEU LEU A . n A 1 194 MET 194 194 194 MET MET A . n A 1 195 ASN 195 195 195 ASN ASN A . n A 1 196 HIS 196 196 196 HIS HIS A . n A 1 197 PRO 197 197 197 PRO PRO A . n A 1 198 ASP 198 198 198 ASP ASP A . n A 1 199 TYR 199 199 199 TYR TYR A . n A 1 200 GLN 200 200 200 GLN GLN A . n A 1 201 THR 201 201 201 THR THR A . n A 1 202 ALA 202 202 202 ALA ALA A . n A 1 203 ILE 203 203 203 ILE ILE A . n A 1 204 ILE 204 204 204 ILE ILE A . n A 1 205 PRO 205 205 205 PRO PRO A . n A 1 206 VAL 206 206 206 VAL VAL A . n A 1 207 GLY 207 207 207 GLY GLY A . n A 1 208 ASP 208 208 208 ASP ASP A . n A 1 209 GLY 209 209 209 GLY GLY A . n A 1 210 LEU 210 210 210 LEU LEU A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 ILE 212 212 212 ILE ILE A . n A 1 213 SER 213 213 213 SER SER A . n A 1 214 LYS 214 214 214 LYS LYS A . n A 1 215 LYS 215 215 215 LYS LYS A . n A 1 216 LYS 216 216 216 LYS LYS A . n A 1 217 ARG 217 217 217 ARG ARG A . n A 1 218 GLY 218 218 ? ? ? A . n A 1 219 HIS 219 219 ? ? ? A . n A 1 220 HIS 220 220 ? ? ? A . n A 1 221 HIS 221 221 ? ? ? A . n A 1 222 HIS 222 222 ? ? ? A . n A 1 223 HIS 223 223 ? ? ? A . n A 1 224 HIS 224 224 ? ? ? A . n A 1 225 GLY 225 225 ? ? ? A . n B 2 1 C 1 27 27 C C D . n B 2 2 C 2 28 28 C C D . n B 2 3 U 3 29 29 U U D . n B 2 4 G 4 30 30 G G D . n B 2 5 C 5 31 31 C C D . n B 2 6 U 6 32 32 U U D . n B 2 7 U 7 33 33 U U D . n B 2 8 U 8 34 34 U U D . n B 2 9 G 9 35 35 G G D . n B 2 10 C 10 36 36 C C D . n B 2 11 A 11 37 ? ? ? D . n B 2 12 C 12 38 38 C C D . n B 2 13 G 13 39 39 G G D . n B 2 14 C 14 40 40 C C D . n B 2 15 A 15 41 41 A A D . n B 2 16 G 16 42 42 G G D . n B 2 17 G 17 43 43 G G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 1 301 1 PO4 PO4 A . D 4 SAM 1 302 1 SAM SAM A . E 5 HOH 1 401 77 HOH HOH A . E 5 HOH 2 402 173 HOH HOH A . E 5 HOH 3 403 164 HOH HOH A . E 5 HOH 4 404 36 HOH HOH A . E 5 HOH 5 405 19 HOH HOH A . E 5 HOH 6 406 65 HOH HOH A . E 5 HOH 7 407 124 HOH HOH A . E 5 HOH 8 408 146 HOH HOH A . E 5 HOH 9 409 153 HOH HOH A . E 5 HOH 10 410 101 HOH HOH A . E 5 HOH 11 411 127 HOH HOH A . E 5 HOH 12 412 12 HOH HOH A . E 5 HOH 13 413 106 HOH HOH A . E 5 HOH 14 414 94 HOH HOH A . E 5 HOH 15 415 50 HOH HOH A . E 5 HOH 16 416 42 HOH HOH A . E 5 HOH 17 417 69 HOH HOH A . E 5 HOH 18 418 119 HOH HOH A . E 5 HOH 19 419 64 HOH HOH A . E 5 HOH 20 420 17 HOH HOH A . E 5 HOH 21 421 48 HOH HOH A . E 5 HOH 22 422 92 HOH HOH A . E 5 HOH 23 423 55 HOH HOH A . E 5 HOH 24 424 73 HOH HOH A . E 5 HOH 25 425 5 HOH HOH A . E 5 HOH 26 426 166 HOH HOH A . E 5 HOH 27 427 74 HOH HOH A . E 5 HOH 28 428 27 HOH HOH A . E 5 HOH 29 429 56 HOH HOH A . E 5 HOH 30 430 207 HOH HOH A . E 5 HOH 31 431 140 HOH HOH A . E 5 HOH 32 432 1 HOH HOH A . E 5 HOH 33 433 136 HOH HOH A . E 5 HOH 34 434 91 HOH HOH A . E 5 HOH 35 435 52 HOH HOH A . E 5 HOH 36 436 16 HOH HOH A . E 5 HOH 37 437 11 HOH HOH A . E 5 HOH 38 438 22 HOH HOH A . E 5 HOH 39 439 86 HOH HOH A . E 5 HOH 40 440 24 HOH HOH A . E 5 HOH 41 441 72 HOH HOH A . E 5 HOH 42 442 40 HOH HOH A . E 5 HOH 43 443 117 HOH HOH A . E 5 HOH 44 444 87 HOH HOH A . E 5 HOH 45 445 61 HOH HOH A . E 5 HOH 46 446 13 HOH HOH A . E 5 HOH 47 447 122 HOH HOH A . E 5 HOH 48 448 37 HOH HOH A . E 5 HOH 49 449 58 HOH HOH A . E 5 HOH 50 450 134 HOH HOH A . E 5 HOH 51 451 198 HOH HOH A . E 5 HOH 52 452 28 HOH HOH A . E 5 HOH 53 453 113 HOH HOH A . E 5 HOH 54 454 30 HOH HOH A . E 5 HOH 55 455 45 HOH HOH A . E 5 HOH 56 456 90 HOH HOH A . E 5 HOH 57 457 114 HOH HOH A . E 5 HOH 58 458 31 HOH HOH A . E 5 HOH 59 459 60 HOH HOH A . E 5 HOH 60 460 118 HOH HOH A . E 5 HOH 61 461 191 HOH HOH A . E 5 HOH 62 462 53 HOH HOH A . E 5 HOH 63 463 185 HOH HOH A . E 5 HOH 64 464 10 HOH HOH A . E 5 HOH 65 465 26 HOH HOH A . E 5 HOH 66 466 96 HOH HOH A . E 5 HOH 67 467 105 HOH HOH A . E 5 HOH 68 468 21 HOH HOH A . E 5 HOH 69 469 139 HOH HOH A . E 5 HOH 70 470 151 HOH HOH A . E 5 HOH 71 471 68 HOH HOH A . E 5 HOH 72 472 44 HOH HOH A . E 5 HOH 73 473 4 HOH HOH A . E 5 HOH 74 474 152 HOH HOH A . E 5 HOH 75 475 206 HOH HOH A . E 5 HOH 76 476 3 HOH HOH A . E 5 HOH 77 477 25 HOH HOH A . E 5 HOH 78 478 71 HOH HOH A . E 5 HOH 79 479 33 HOH HOH A . E 5 HOH 80 480 97 HOH HOH A . E 5 HOH 81 481 23 HOH HOH A . E 5 HOH 82 482 137 HOH HOH A . E 5 HOH 83 483 29 HOH HOH A . E 5 HOH 84 484 34 HOH HOH A . E 5 HOH 85 485 179 HOH HOH A . E 5 HOH 86 486 84 HOH HOH A . E 5 HOH 87 487 8 HOH HOH A . E 5 HOH 88 488 57 HOH HOH A . E 5 HOH 89 489 39 HOH HOH A . E 5 HOH 90 490 46 HOH HOH A . E 5 HOH 91 491 161 HOH HOH A . E 5 HOH 92 492 88 HOH HOH A . E 5 HOH 93 493 7 HOH HOH A . E 5 HOH 94 494 41 HOH HOH A . E 5 HOH 95 495 67 HOH HOH A . E 5 HOH 96 496 103 HOH HOH A . E 5 HOH 97 497 43 HOH HOH A . E 5 HOH 98 498 20 HOH HOH A . E 5 HOH 99 499 98 HOH HOH A . E 5 HOH 100 500 6 HOH HOH A . E 5 HOH 101 501 18 HOH HOH A . E 5 HOH 102 502 35 HOH HOH A . E 5 HOH 103 503 89 HOH HOH A . E 5 HOH 104 504 110 HOH HOH A . E 5 HOH 105 505 78 HOH HOH A . E 5 HOH 106 506 9 HOH HOH A . E 5 HOH 107 507 199 HOH HOH A . E 5 HOH 108 508 82 HOH HOH A . E 5 HOH 109 509 133 HOH HOH A . E 5 HOH 110 510 32 HOH HOH A . E 5 HOH 111 511 47 HOH HOH A . E 5 HOH 112 512 83 HOH HOH A . E 5 HOH 113 513 205 HOH HOH A . E 5 HOH 114 514 128 HOH HOH A . E 5 HOH 115 515 138 HOH HOH A . E 5 HOH 116 516 177 HOH HOH A . E 5 HOH 117 517 157 HOH HOH A . E 5 HOH 118 518 2 HOH HOH A . E 5 HOH 119 519 49 HOH HOH A . E 5 HOH 120 520 158 HOH HOH A . E 5 HOH 121 521 66 HOH HOH A . E 5 HOH 122 522 62 HOH HOH A . E 5 HOH 123 523 186 HOH HOH A . E 5 HOH 124 524 203 HOH HOH A . E 5 HOH 125 525 102 HOH HOH A . E 5 HOH 126 526 175 HOH HOH A . E 5 HOH 127 527 184 HOH HOH A . E 5 HOH 128 528 193 HOH HOH A . E 5 HOH 129 529 201 HOH HOH A . E 5 HOH 130 530 79 HOH HOH A . E 5 HOH 131 531 211 HOH HOH A . E 5 HOH 132 532 208 HOH HOH A . E 5 HOH 133 533 135 HOH HOH A . E 5 HOH 134 534 202 HOH HOH A . E 5 HOH 135 535 149 HOH HOH A . E 5 HOH 136 536 167 HOH HOH A . E 5 HOH 137 537 109 HOH HOH A . E 5 HOH 138 538 210 HOH HOH A . E 5 HOH 139 539 80 HOH HOH A . E 5 HOH 140 540 104 HOH HOH A . E 5 HOH 141 541 51 HOH HOH A . E 5 HOH 142 542 209 HOH HOH A . E 5 HOH 143 543 130 HOH HOH A . E 5 HOH 144 544 183 HOH HOH A . E 5 HOH 145 545 70 HOH HOH A . E 5 HOH 146 546 54 HOH HOH A . E 5 HOH 147 547 144 HOH HOH A . E 5 HOH 148 548 172 HOH HOH A . E 5 HOH 149 549 192 HOH HOH A . E 5 HOH 150 550 123 HOH HOH A . E 5 HOH 151 551 38 HOH HOH A . E 5 HOH 152 552 142 HOH HOH A . E 5 HOH 153 553 171 HOH HOH A . E 5 HOH 154 554 76 HOH HOH A . E 5 HOH 155 555 15 HOH HOH A . E 5 HOH 156 556 204 HOH HOH A . E 5 HOH 157 557 190 HOH HOH A . E 5 HOH 158 558 85 HOH HOH A . F 5 HOH 1 101 194 HOH HOH D . F 5 HOH 2 102 180 HOH HOH D . F 5 HOH 3 103 195 HOH HOH D . F 5 HOH 4 104 196 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 910 ? 1 MORE -8 ? 1 'SSA (A^2)' 13970 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-07-11 2 'Structure model' 1 1 2018-07-25 3 'Structure model' 1 2 2018-10-10 4 'Structure model' 1 3 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Structure summary' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Refinement description' 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 3 'Structure model' entity 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' entity 8 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 3 'Structure model' '_citation.journal_volume' 3 3 'Structure model' '_citation.page_first' 4 3 'Structure model' '_citation.page_last' 5 3 'Structure model' '_citation.title' 6 3 'Structure model' '_entity.formula_weight' 7 4 'Structure model' '_database_2.pdbx_DOI' 8 4 'Structure model' '_database_2.pdbx_database_accession' 9 4 'Structure model' '_entity.formula_weight' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -28.1146 6.8175 -30.1587 0.1176 0.0606 0.0237 0.0078 -0.0024 -0.0196 0.2775 0.1327 0.4820 -0.1211 -0.0681 -0.0626 0.0077 -0.0113 0.0036 -0.0591 -0.0073 0.0362 -0.0077 -0.0958 0.0843 'X-RAY DIFFRACTION' 2 ? refined -9.9777 8.5676 -10.0517 0.1885 0.2178 0.3709 -0.0422 0.2186 -0.0510 6.9325 3.6279 13.4046 -4.0478 6.3201 -5.2039 0.6415 0.8255 -1.4671 -0.7718 0.1712 0.0761 -0.1355 -0.4008 -0.8049 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 2 A 217 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 D 27 D 43 ? ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0189 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OP2 _pdbx_validate_symm_contact.auth_asym_id_1 D _pdbx_validate_symm_contact.auth_comp_id_1 C _pdbx_validate_symm_contact.auth_seq_id_1 36 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OP2 _pdbx_validate_symm_contact.auth_asym_id_2 D _pdbx_validate_symm_contact.auth_comp_id_2 C _pdbx_validate_symm_contact.auth_seq_id_2 36 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 6_554 _pdbx_validate_symm_contact.dist 1.75 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CG A MET 43 ? ? SD A MET 43 ? ? CE A MET 43 ? ? 80.61 100.20 -19.59 1.60 N 2 1 CB A ASP 113 ? ? CG A ASP 113 ? ? OD2 A ASP 113 ? ? 112.84 118.30 -5.46 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 34 ? ? 39.76 43.96 2 1 ALA A 64 ? ? 48.24 -121.94 3 1 ALA A 135 ? ? 33.84 87.04 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 32 ? CG ? A GLU 32 CG 2 1 Y 1 A GLU 32 ? CD ? A GLU 32 CD 3 1 Y 1 A GLU 32 ? OE1 ? A GLU 32 OE1 4 1 Y 1 A GLU 32 ? OE2 ? A GLU 32 OE2 5 1 Y 1 D C 36 ? "O5'" ? B C 10 "O5'" 6 1 Y 1 D C 36 ? "C5'" ? B C 10 "C5'" 7 1 Y 1 D C 36 ? "C4'" ? B C 10 "C4'" 8 1 Y 1 D C 36 ? "O4'" ? B C 10 "O4'" 9 1 Y 1 D C 36 ? "C3'" ? B C 10 "C3'" 10 1 Y 1 D C 36 ? "O3'" ? B C 10 "O3'" 11 1 Y 1 D C 36 ? "C2'" ? B C 10 "C2'" 12 1 Y 1 D C 36 ? "O2'" ? B C 10 "O2'" 13 1 Y 1 D C 36 ? "C1'" ? B C 10 "C1'" 14 1 Y 1 D C 36 ? N1 ? B C 10 N1 15 1 Y 1 D C 36 ? C2 ? B C 10 C2 16 1 Y 1 D C 36 ? O2 ? B C 10 O2 17 1 Y 1 D C 36 ? N3 ? B C 10 N3 18 1 Y 1 D C 36 ? C4 ? B C 10 C4 19 1 Y 1 D C 36 ? N4 ? B C 10 N4 20 1 Y 1 D C 36 ? C5 ? B C 10 C5 21 1 Y 1 D C 36 ? C6 ? B C 10 C6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLY 218 ? A GLY 218 3 1 Y 1 A HIS 219 ? A HIS 219 4 1 Y 1 A HIS 220 ? A HIS 220 5 1 Y 1 A HIS 221 ? A HIS 221 6 1 Y 1 A HIS 222 ? A HIS 222 7 1 Y 1 A HIS 223 ? A HIS 223 8 1 Y 1 A HIS 224 ? A HIS 224 9 1 Y 1 A GLY 225 ? A GLY 225 10 1 Y 1 D A 37 ? B A 11 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 G OP3 O N N 146 G P P N N 147 G OP1 O N N 148 G OP2 O N N 149 G "O5'" O N N 150 G "C5'" C N N 151 G "C4'" C N R 152 G "O4'" O N N 153 G "C3'" C N S 154 G "O3'" O N N 155 G "C2'" C N R 156 G "O2'" O N N 157 G "C1'" C N R 158 G N9 N Y N 159 G C8 C Y N 160 G N7 N Y N 161 G C5 C Y N 162 G C6 C N N 163 G O6 O N N 164 G N1 N N N 165 G C2 C N N 166 G N2 N N N 167 G N3 N N N 168 G C4 C Y N 169 G HOP3 H N N 170 G HOP2 H N N 171 G "H5'" H N N 172 G "H5''" H N N 173 G "H4'" H N N 174 G "H3'" H N N 175 G "HO3'" H N N 176 G "H2'" H N N 177 G "HO2'" H N N 178 G "H1'" H N N 179 G H8 H N N 180 G H1 H N N 181 G H21 H N N 182 G H22 H N N 183 GLN N N N N 184 GLN CA C N S 185 GLN C C N N 186 GLN O O N N 187 GLN CB C N N 188 GLN CG C N N 189 GLN CD C N N 190 GLN OE1 O N N 191 GLN NE2 N N N 192 GLN OXT O N N 193 GLN H H N N 194 GLN H2 H N N 195 GLN HA H N N 196 GLN HB2 H N N 197 GLN HB3 H N N 198 GLN HG2 H N N 199 GLN HG3 H N N 200 GLN HE21 H N N 201 GLN HE22 H N N 202 GLN HXT H N N 203 GLU N N N N 204 GLU CA C N S 205 GLU C C N N 206 GLU O O N N 207 GLU CB C N N 208 GLU CG C N N 209 GLU CD C N N 210 GLU OE1 O N N 211 GLU OE2 O N N 212 GLU OXT O N N 213 GLU H H N N 214 GLU H2 H N N 215 GLU HA H N N 216 GLU HB2 H N N 217 GLU HB3 H N N 218 GLU HG2 H N N 219 GLU HG3 H N N 220 GLU HE2 H N N 221 GLU HXT H N N 222 GLY N N N N 223 GLY CA C N N 224 GLY C C N N 225 GLY O O N N 226 GLY OXT O N N 227 GLY H H N N 228 GLY H2 H N N 229 GLY HA2 H N N 230 GLY HA3 H N N 231 GLY HXT H N N 232 HIS N N N N 233 HIS CA C N S 234 HIS C C N N 235 HIS O O N N 236 HIS CB C N N 237 HIS CG C Y N 238 HIS ND1 N Y N 239 HIS CD2 C Y N 240 HIS CE1 C Y N 241 HIS NE2 N Y N 242 HIS OXT O N N 243 HIS H H N N 244 HIS H2 H N N 245 HIS HA H N N 246 HIS HB2 H N N 247 HIS HB3 H N N 248 HIS HD1 H N N 249 HIS HD2 H N N 250 HIS HE1 H N N 251 HIS HE2 H N N 252 HIS HXT H N N 253 HOH O O N N 254 HOH H1 H N N 255 HOH H2 H N N 256 ILE N N N N 257 ILE CA C N S 258 ILE C C N N 259 ILE O O N N 260 ILE CB C N S 261 ILE CG1 C N N 262 ILE CG2 C N N 263 ILE CD1 C N N 264 ILE OXT O N N 265 ILE H H N N 266 ILE H2 H N N 267 ILE HA H N N 268 ILE HB H N N 269 ILE HG12 H N N 270 ILE HG13 H N N 271 ILE HG21 H N N 272 ILE HG22 H N N 273 ILE HG23 H N N 274 ILE HD11 H N N 275 ILE HD12 H N N 276 ILE HD13 H N N 277 ILE HXT H N N 278 LEU N N N N 279 LEU CA C N S 280 LEU C C N N 281 LEU O O N N 282 LEU CB C N N 283 LEU CG C N N 284 LEU CD1 C N N 285 LEU CD2 C N N 286 LEU OXT O N N 287 LEU H H N N 288 LEU H2 H N N 289 LEU HA H N N 290 LEU HB2 H N N 291 LEU HB3 H N N 292 LEU HG H N N 293 LEU HD11 H N N 294 LEU HD12 H N N 295 LEU HD13 H N N 296 LEU HD21 H N N 297 LEU HD22 H N N 298 LEU HD23 H N N 299 LEU HXT H N N 300 LYS N N N N 301 LYS CA C N S 302 LYS C C N N 303 LYS O O N N 304 LYS CB C N N 305 LYS CG C N N 306 LYS CD C N N 307 LYS CE C N N 308 LYS NZ N N N 309 LYS OXT O N N 310 LYS H H N N 311 LYS H2 H N N 312 LYS HA H N N 313 LYS HB2 H N N 314 LYS HB3 H N N 315 LYS HG2 H N N 316 LYS HG3 H N N 317 LYS HD2 H N N 318 LYS HD3 H N N 319 LYS HE2 H N N 320 LYS HE3 H N N 321 LYS HZ1 H N N 322 LYS HZ2 H N N 323 LYS HZ3 H N N 324 LYS HXT H N N 325 MET N N N N 326 MET CA C N S 327 MET C C N N 328 MET O O N N 329 MET CB C N N 330 MET CG C N N 331 MET SD S N N 332 MET CE C N N 333 MET OXT O N N 334 MET H H N N 335 MET H2 H N N 336 MET HA H N N 337 MET HB2 H N N 338 MET HB3 H N N 339 MET HG2 H N N 340 MET HG3 H N N 341 MET HE1 H N N 342 MET HE2 H N N 343 MET HE3 H N N 344 MET HXT H N N 345 PHE N N N N 346 PHE CA C N S 347 PHE C C N N 348 PHE O O N N 349 PHE CB C N N 350 PHE CG C Y N 351 PHE CD1 C Y N 352 PHE CD2 C Y N 353 PHE CE1 C Y N 354 PHE CE2 C Y N 355 PHE CZ C Y N 356 PHE OXT O N N 357 PHE H H N N 358 PHE H2 H N N 359 PHE HA H N N 360 PHE HB2 H N N 361 PHE HB3 H N N 362 PHE HD1 H N N 363 PHE HD2 H N N 364 PHE HE1 H N N 365 PHE HE2 H N N 366 PHE HZ H N N 367 PHE HXT H N N 368 PO4 P P N N 369 PO4 O1 O N N 370 PO4 O2 O N N 371 PO4 O3 O N N 372 PO4 O4 O N N 373 PRO N N N N 374 PRO CA C N S 375 PRO C C N N 376 PRO O O N N 377 PRO CB C N N 378 PRO CG C N N 379 PRO CD C N N 380 PRO OXT O N N 381 PRO H H N N 382 PRO HA H N N 383 PRO HB2 H N N 384 PRO HB3 H N N 385 PRO HG2 H N N 386 PRO HG3 H N N 387 PRO HD2 H N N 388 PRO HD3 H N N 389 PRO HXT H N N 390 SAM N N N N 391 SAM CA C N S 392 SAM C C N N 393 SAM O O N N 394 SAM OXT O N N 395 SAM CB C N N 396 SAM CG C N N 397 SAM SD S N S 398 SAM CE C N N 399 SAM "C5'" C N N 400 SAM "C4'" C N S 401 SAM "O4'" O N N 402 SAM "C3'" C N S 403 SAM "O3'" O N N 404 SAM "C2'" C N R 405 SAM "O2'" O N N 406 SAM "C1'" C N R 407 SAM N9 N Y N 408 SAM C8 C Y N 409 SAM N7 N Y N 410 SAM C5 C Y N 411 SAM C6 C Y N 412 SAM N6 N N N 413 SAM N1 N Y N 414 SAM C2 C Y N 415 SAM N3 N Y N 416 SAM C4 C Y N 417 SAM HN1 H N N 418 SAM HN2 H N N 419 SAM HA H N N 420 SAM HB1 H N N 421 SAM HB2 H N N 422 SAM HG1 H N N 423 SAM HG2 H N N 424 SAM HE1 H N N 425 SAM HE2 H N N 426 SAM HE3 H N N 427 SAM "H5'1" H N N 428 SAM "H5'2" H N N 429 SAM "H4'" H N N 430 SAM "H3'" H N N 431 SAM "HO3'" H N N 432 SAM "H2'" H N N 433 SAM "HO2'" H N N 434 SAM "H1'" H N N 435 SAM H8 H N N 436 SAM HN61 H N N 437 SAM HN62 H N N 438 SAM H2 H N N 439 SER N N N N 440 SER CA C N S 441 SER C C N N 442 SER O O N N 443 SER CB C N N 444 SER OG O N N 445 SER OXT O N N 446 SER H H N N 447 SER H2 H N N 448 SER HA H N N 449 SER HB2 H N N 450 SER HB3 H N N 451 SER HG H N N 452 SER HXT H N N 453 THR N N N N 454 THR CA C N S 455 THR C C N N 456 THR O O N N 457 THR CB C N R 458 THR OG1 O N N 459 THR CG2 C N N 460 THR OXT O N N 461 THR H H N N 462 THR H2 H N N 463 THR HA H N N 464 THR HB H N N 465 THR HG1 H N N 466 THR HG21 H N N 467 THR HG22 H N N 468 THR HG23 H N N 469 THR HXT H N N 470 TRP N N N N 471 TRP CA C N S 472 TRP C C N N 473 TRP O O N N 474 TRP CB C N N 475 TRP CG C Y N 476 TRP CD1 C Y N 477 TRP CD2 C Y N 478 TRP NE1 N Y N 479 TRP CE2 C Y N 480 TRP CE3 C Y N 481 TRP CZ2 C Y N 482 TRP CZ3 C Y N 483 TRP CH2 C Y N 484 TRP OXT O N N 485 TRP H H N N 486 TRP H2 H N N 487 TRP HA H N N 488 TRP HB2 H N N 489 TRP HB3 H N N 490 TRP HD1 H N N 491 TRP HE1 H N N 492 TRP HE3 H N N 493 TRP HZ2 H N N 494 TRP HZ3 H N N 495 TRP HH2 H N N 496 TRP HXT H N N 497 TYR N N N N 498 TYR CA C N S 499 TYR C C N N 500 TYR O O N N 501 TYR CB C N N 502 TYR CG C Y N 503 TYR CD1 C Y N 504 TYR CD2 C Y N 505 TYR CE1 C Y N 506 TYR CE2 C Y N 507 TYR CZ C Y N 508 TYR OH O N N 509 TYR OXT O N N 510 TYR H H N N 511 TYR H2 H N N 512 TYR HA H N N 513 TYR HB2 H N N 514 TYR HB3 H N N 515 TYR HD1 H N N 516 TYR HD2 H N N 517 TYR HE1 H N N 518 TYR HE2 H N N 519 TYR HH H N N 520 TYR HXT H N N 521 U OP3 O N N 522 U P P N N 523 U OP1 O N N 524 U OP2 O N N 525 U "O5'" O N N 526 U "C5'" C N N 527 U "C4'" C N R 528 U "O4'" O N N 529 U "C3'" C N S 530 U "O3'" O N N 531 U "C2'" C N R 532 U "O2'" O N N 533 U "C1'" C N R 534 U N1 N N N 535 U C2 C N N 536 U O2 O N N 537 U N3 N N N 538 U C4 C N N 539 U O4 O N N 540 U C5 C N N 541 U C6 C N N 542 U HOP3 H N N 543 U HOP2 H N N 544 U "H5'" H N N 545 U "H5''" H N N 546 U "H4'" H N N 547 U "H3'" H N N 548 U "HO3'" H N N 549 U "H2'" H N N 550 U "HO2'" H N N 551 U "H1'" H N N 552 U H3 H N N 553 U H5 H N N 554 U H6 H N N 555 VAL N N N N 556 VAL CA C N S 557 VAL C C N N 558 VAL O O N N 559 VAL CB C N N 560 VAL CG1 C N N 561 VAL CG2 C N N 562 VAL OXT O N N 563 VAL H H N N 564 VAL H2 H N N 565 VAL HA H N N 566 VAL HB H N N 567 VAL HG11 H N N 568 VAL HG12 H N N 569 VAL HG13 H N N 570 VAL HG21 H N N 571 VAL HG22 H N N 572 VAL HG23 H N N 573 VAL HXT H N N 574 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLN N CA sing N N 185 GLN N H sing N N 186 GLN N H2 sing N N 187 GLN CA C sing N N 188 GLN CA CB sing N N 189 GLN CA HA sing N N 190 GLN C O doub N N 191 GLN C OXT sing N N 192 GLN CB CG sing N N 193 GLN CB HB2 sing N N 194 GLN CB HB3 sing N N 195 GLN CG CD sing N N 196 GLN CG HG2 sing N N 197 GLN CG HG3 sing N N 198 GLN CD OE1 doub N N 199 GLN CD NE2 sing N N 200 GLN NE2 HE21 sing N N 201 GLN NE2 HE22 sing N N 202 GLN OXT HXT sing N N 203 GLU N CA sing N N 204 GLU N H sing N N 205 GLU N H2 sing N N 206 GLU CA C sing N N 207 GLU CA CB sing N N 208 GLU CA HA sing N N 209 GLU C O doub N N 210 GLU C OXT sing N N 211 GLU CB CG sing N N 212 GLU CB HB2 sing N N 213 GLU CB HB3 sing N N 214 GLU CG CD sing N N 215 GLU CG HG2 sing N N 216 GLU CG HG3 sing N N 217 GLU CD OE1 doub N N 218 GLU CD OE2 sing N N 219 GLU OE2 HE2 sing N N 220 GLU OXT HXT sing N N 221 GLY N CA sing N N 222 GLY N H sing N N 223 GLY N H2 sing N N 224 GLY CA C sing N N 225 GLY CA HA2 sing N N 226 GLY CA HA3 sing N N 227 GLY C O doub N N 228 GLY C OXT sing N N 229 GLY OXT HXT sing N N 230 HIS N CA sing N N 231 HIS N H sing N N 232 HIS N H2 sing N N 233 HIS CA C sing N N 234 HIS CA CB sing N N 235 HIS CA HA sing N N 236 HIS C O doub N N 237 HIS C OXT sing N N 238 HIS CB CG sing N N 239 HIS CB HB2 sing N N 240 HIS CB HB3 sing N N 241 HIS CG ND1 sing Y N 242 HIS CG CD2 doub Y N 243 HIS ND1 CE1 doub Y N 244 HIS ND1 HD1 sing N N 245 HIS CD2 NE2 sing Y N 246 HIS CD2 HD2 sing N N 247 HIS CE1 NE2 sing Y N 248 HIS CE1 HE1 sing N N 249 HIS NE2 HE2 sing N N 250 HIS OXT HXT sing N N 251 HOH O H1 sing N N 252 HOH O H2 sing N N 253 ILE N CA sing N N 254 ILE N H sing N N 255 ILE N H2 sing N N 256 ILE CA C sing N N 257 ILE CA CB sing N N 258 ILE CA HA sing N N 259 ILE C O doub N N 260 ILE C OXT sing N N 261 ILE CB CG1 sing N N 262 ILE CB CG2 sing N N 263 ILE CB HB sing N N 264 ILE CG1 CD1 sing N N 265 ILE CG1 HG12 sing N N 266 ILE CG1 HG13 sing N N 267 ILE CG2 HG21 sing N N 268 ILE CG2 HG22 sing N N 269 ILE CG2 HG23 sing N N 270 ILE CD1 HD11 sing N N 271 ILE CD1 HD12 sing N N 272 ILE CD1 HD13 sing N N 273 ILE OXT HXT sing N N 274 LEU N CA sing N N 275 LEU N H sing N N 276 LEU N H2 sing N N 277 LEU CA C sing N N 278 LEU CA CB sing N N 279 LEU CA HA sing N N 280 LEU C O doub N N 281 LEU C OXT sing N N 282 LEU CB CG sing N N 283 LEU CB HB2 sing N N 284 LEU CB HB3 sing N N 285 LEU CG CD1 sing N N 286 LEU CG CD2 sing N N 287 LEU CG HG sing N N 288 LEU CD1 HD11 sing N N 289 LEU CD1 HD12 sing N N 290 LEU CD1 HD13 sing N N 291 LEU CD2 HD21 sing N N 292 LEU CD2 HD22 sing N N 293 LEU CD2 HD23 sing N N 294 LEU OXT HXT sing N N 295 LYS N CA sing N N 296 LYS N H sing N N 297 LYS N H2 sing N N 298 LYS CA C sing N N 299 LYS CA CB sing N N 300 LYS CA HA sing N N 301 LYS C O doub N N 302 LYS C OXT sing N N 303 LYS CB CG sing N N 304 LYS CB HB2 sing N N 305 LYS CB HB3 sing N N 306 LYS CG CD sing N N 307 LYS CG HG2 sing N N 308 LYS CG HG3 sing N N 309 LYS CD CE sing N N 310 LYS CD HD2 sing N N 311 LYS CD HD3 sing N N 312 LYS CE NZ sing N N 313 LYS CE HE2 sing N N 314 LYS CE HE3 sing N N 315 LYS NZ HZ1 sing N N 316 LYS NZ HZ2 sing N N 317 LYS NZ HZ3 sing N N 318 LYS OXT HXT sing N N 319 MET N CA sing N N 320 MET N H sing N N 321 MET N H2 sing N N 322 MET CA C sing N N 323 MET CA CB sing N N 324 MET CA HA sing N N 325 MET C O doub N N 326 MET C OXT sing N N 327 MET CB CG sing N N 328 MET CB HB2 sing N N 329 MET CB HB3 sing N N 330 MET CG SD sing N N 331 MET CG HG2 sing N N 332 MET CG HG3 sing N N 333 MET SD CE sing N N 334 MET CE HE1 sing N N 335 MET CE HE2 sing N N 336 MET CE HE3 sing N N 337 MET OXT HXT sing N N 338 PHE N CA sing N N 339 PHE N H sing N N 340 PHE N H2 sing N N 341 PHE CA C sing N N 342 PHE CA CB sing N N 343 PHE CA HA sing N N 344 PHE C O doub N N 345 PHE C OXT sing N N 346 PHE CB CG sing N N 347 PHE CB HB2 sing N N 348 PHE CB HB3 sing N N 349 PHE CG CD1 doub Y N 350 PHE CG CD2 sing Y N 351 PHE CD1 CE1 sing Y N 352 PHE CD1 HD1 sing N N 353 PHE CD2 CE2 doub Y N 354 PHE CD2 HD2 sing N N 355 PHE CE1 CZ doub Y N 356 PHE CE1 HE1 sing N N 357 PHE CE2 CZ sing Y N 358 PHE CE2 HE2 sing N N 359 PHE CZ HZ sing N N 360 PHE OXT HXT sing N N 361 PO4 P O1 doub N N 362 PO4 P O2 sing N N 363 PO4 P O3 sing N N 364 PO4 P O4 sing N N 365 PRO N CA sing N N 366 PRO N CD sing N N 367 PRO N H sing N N 368 PRO CA C sing N N 369 PRO CA CB sing N N 370 PRO CA HA sing N N 371 PRO C O doub N N 372 PRO C OXT sing N N 373 PRO CB CG sing N N 374 PRO CB HB2 sing N N 375 PRO CB HB3 sing N N 376 PRO CG CD sing N N 377 PRO CG HG2 sing N N 378 PRO CG HG3 sing N N 379 PRO CD HD2 sing N N 380 PRO CD HD3 sing N N 381 PRO OXT HXT sing N N 382 SAM N CA sing N N 383 SAM N HN1 sing N N 384 SAM N HN2 sing N N 385 SAM CA C sing N N 386 SAM CA CB sing N N 387 SAM CA HA sing N N 388 SAM C O doub N N 389 SAM C OXT sing N N 390 SAM CB CG sing N N 391 SAM CB HB1 sing N N 392 SAM CB HB2 sing N N 393 SAM CG SD sing N N 394 SAM CG HG1 sing N N 395 SAM CG HG2 sing N N 396 SAM SD CE sing N N 397 SAM SD "C5'" sing N N 398 SAM CE HE1 sing N N 399 SAM CE HE2 sing N N 400 SAM CE HE3 sing N N 401 SAM "C5'" "C4'" sing N N 402 SAM "C5'" "H5'1" sing N N 403 SAM "C5'" "H5'2" sing N N 404 SAM "C4'" "O4'" sing N N 405 SAM "C4'" "C3'" sing N N 406 SAM "C4'" "H4'" sing N N 407 SAM "O4'" "C1'" sing N N 408 SAM "C3'" "O3'" sing N N 409 SAM "C3'" "C2'" sing N N 410 SAM "C3'" "H3'" sing N N 411 SAM "O3'" "HO3'" sing N N 412 SAM "C2'" "O2'" sing N N 413 SAM "C2'" "C1'" sing N N 414 SAM "C2'" "H2'" sing N N 415 SAM "O2'" "HO2'" sing N N 416 SAM "C1'" N9 sing N N 417 SAM "C1'" "H1'" sing N N 418 SAM N9 C8 sing Y N 419 SAM N9 C4 sing Y N 420 SAM C8 N7 doub Y N 421 SAM C8 H8 sing N N 422 SAM N7 C5 sing Y N 423 SAM C5 C6 sing Y N 424 SAM C5 C4 doub Y N 425 SAM C6 N6 sing N N 426 SAM C6 N1 doub Y N 427 SAM N6 HN61 sing N N 428 SAM N6 HN62 sing N N 429 SAM N1 C2 sing Y N 430 SAM C2 N3 doub Y N 431 SAM C2 H2 sing N N 432 SAM N3 C4 sing Y N 433 SER N CA sing N N 434 SER N H sing N N 435 SER N H2 sing N N 436 SER CA C sing N N 437 SER CA CB sing N N 438 SER CA HA sing N N 439 SER C O doub N N 440 SER C OXT sing N N 441 SER CB OG sing N N 442 SER CB HB2 sing N N 443 SER CB HB3 sing N N 444 SER OG HG sing N N 445 SER OXT HXT sing N N 446 THR N CA sing N N 447 THR N H sing N N 448 THR N H2 sing N N 449 THR CA C sing N N 450 THR CA CB sing N N 451 THR CA HA sing N N 452 THR C O doub N N 453 THR C OXT sing N N 454 THR CB OG1 sing N N 455 THR CB CG2 sing N N 456 THR CB HB sing N N 457 THR OG1 HG1 sing N N 458 THR CG2 HG21 sing N N 459 THR CG2 HG22 sing N N 460 THR CG2 HG23 sing N N 461 THR OXT HXT sing N N 462 TRP N CA sing N N 463 TRP N H sing N N 464 TRP N H2 sing N N 465 TRP CA C sing N N 466 TRP CA CB sing N N 467 TRP CA HA sing N N 468 TRP C O doub N N 469 TRP C OXT sing N N 470 TRP CB CG sing N N 471 TRP CB HB2 sing N N 472 TRP CB HB3 sing N N 473 TRP CG CD1 doub Y N 474 TRP CG CD2 sing Y N 475 TRP CD1 NE1 sing Y N 476 TRP CD1 HD1 sing N N 477 TRP CD2 CE2 doub Y N 478 TRP CD2 CE3 sing Y N 479 TRP NE1 CE2 sing Y N 480 TRP NE1 HE1 sing N N 481 TRP CE2 CZ2 sing Y N 482 TRP CE3 CZ3 doub Y N 483 TRP CE3 HE3 sing N N 484 TRP CZ2 CH2 doub Y N 485 TRP CZ2 HZ2 sing N N 486 TRP CZ3 CH2 sing Y N 487 TRP CZ3 HZ3 sing N N 488 TRP CH2 HH2 sing N N 489 TRP OXT HXT sing N N 490 TYR N CA sing N N 491 TYR N H sing N N 492 TYR N H2 sing N N 493 TYR CA C sing N N 494 TYR CA CB sing N N 495 TYR CA HA sing N N 496 TYR C O doub N N 497 TYR C OXT sing N N 498 TYR CB CG sing N N 499 TYR CB HB2 sing N N 500 TYR CB HB3 sing N N 501 TYR CG CD1 doub Y N 502 TYR CG CD2 sing Y N 503 TYR CD1 CE1 sing Y N 504 TYR CD1 HD1 sing N N 505 TYR CD2 CE2 doub Y N 506 TYR CD2 HD2 sing N N 507 TYR CE1 CZ doub Y N 508 TYR CE1 HE1 sing N N 509 TYR CE2 CZ sing Y N 510 TYR CE2 HE2 sing N N 511 TYR CZ OH sing N N 512 TYR OH HH sing N N 513 TYR OXT HXT sing N N 514 U OP3 P sing N N 515 U OP3 HOP3 sing N N 516 U P OP1 doub N N 517 U P OP2 sing N N 518 U P "O5'" sing N N 519 U OP2 HOP2 sing N N 520 U "O5'" "C5'" sing N N 521 U "C5'" "C4'" sing N N 522 U "C5'" "H5'" sing N N 523 U "C5'" "H5''" sing N N 524 U "C4'" "O4'" sing N N 525 U "C4'" "C3'" sing N N 526 U "C4'" "H4'" sing N N 527 U "O4'" "C1'" sing N N 528 U "C3'" "O3'" sing N N 529 U "C3'" "C2'" sing N N 530 U "C3'" "H3'" sing N N 531 U "O3'" "HO3'" sing N N 532 U "C2'" "O2'" sing N N 533 U "C2'" "C1'" sing N N 534 U "C2'" "H2'" sing N N 535 U "O2'" "HO2'" sing N N 536 U "C1'" N1 sing N N 537 U "C1'" "H1'" sing N N 538 U N1 C2 sing N N 539 U N1 C6 sing N N 540 U C2 O2 doub N N 541 U C2 N3 sing N N 542 U N3 C4 sing N N 543 U N3 H3 sing N N 544 U C4 O4 doub N N 545 U C4 C5 sing N N 546 U C5 C6 doub N N 547 U C5 H5 sing N N 548 U C6 H6 sing N N 549 VAL N CA sing N N 550 VAL N H sing N N 551 VAL N H2 sing N N 552 VAL CA C sing N N 553 VAL CA CB sing N N 554 VAL CA HA sing N N 555 VAL C O doub N N 556 VAL C OXT sing N N 557 VAL CB CG1 sing N N 558 VAL CB CG2 sing N N 559 VAL CB HB sing N N 560 VAL CG1 HG11 sing N N 561 VAL CG1 HG12 sing N N 562 VAL CG1 HG13 sing N N 563 VAL CG2 HG21 sing N N 564 VAL CG2 HG22 sing N N 565 VAL CG2 HG23 sing N N 566 VAL OXT HXT sing N N 567 # _ndb_struct_conf_na.entry_id 5ZW4 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B C 1 1_555 B G 17 1_555 0.858 0.053 0.287 31.585 -4.881 -7.078 1 D_C27:G43_D D 27 ? D 43 ? 19 1 1 B C 2 1_555 B G 16 1_555 1.206 -0.129 0.420 18.660 -19.257 1.255 2 D_C28:G42_D D 28 ? D 42 ? 19 1 1 B U 3 1_555 B A 15 1_555 0.285 -0.312 1.006 -4.419 -3.666 -0.037 3 D_U29:A41_D D 29 ? D 41 ? 20 1 1 B G 4 1_555 B C 14 1_555 -0.840 -0.269 -0.499 -14.863 -6.115 -0.530 4 D_G30:C40_D D 30 ? D 40 ? 19 1 1 B C 5 1_555 B G 13 1_555 0.301 -0.026 -0.058 -22.515 8.532 -3.083 5 D_C31:G39_D D 31 ? D 39 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B C 1 1_555 B G 17 1_555 B C 2 1_555 B G 16 1_555 0.258 -1.751 3.324 1.496 7.669 36.055 -3.772 -0.212 2.912 12.215 -2.382 36.864 1 DD_C27C28:G42G43_DD D 27 ? D 43 ? D 28 ? D 42 ? 1 B C 2 1_555 B G 16 1_555 B U 3 1_555 B A 15 1_555 -0.730 -2.663 3.492 -7.319 13.168 28.246 -7.049 0.100 2.185 24.871 13.824 31.940 2 DD_C28U29:A41G42_DD D 28 ? D 42 ? D 29 ? D 41 ? 1 B U 3 1_555 B A 15 1_555 B G 4 1_555 B C 14 1_555 0.166 -2.418 3.467 9.468 6.333 33.365 -4.944 1.139 2.912 10.651 -15.924 35.203 3 DD_U29G30:C40A41_DD D 29 ? D 41 ? D 30 ? D 40 ? 1 B G 4 1_555 B C 14 1_555 B C 5 1_555 B G 13 1_555 0.545 -1.922 3.725 -1.261 -0.369 34.512 -3.172 -1.140 3.724 -0.622 2.124 34.536 4 DD_G30C31:G39C40_DD D 30 ? D 40 ? D 31 ? D 39 ? # _pdbx_audit_support.funding_organization 'National Research Foundation (Korea)' _pdbx_audit_support.country 'Korea, Republic Of' _pdbx_audit_support.grant_number 2016R1D1A1B03930716 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'PHOSPHATE ION' PO4 4 S-ADENOSYLMETHIONINE SAM 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2GPY _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #