HEADER OXIDOREDUCTASE 17-MAY-18 5ZWW OBSLTE 16-DEC-20 5ZWW 7DLQ TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF LACTOPEROXIDASE WITH HYDROGEN TITLE 2 PEROXIDE AT 1.77A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOPEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 118-712; COMPND 5 SYNONYM: LPO; COMPND 6 EC: 1.11.1.7 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.K.SINGH,A.K.SINGH,S.SHARMA,T.P.SINGH REVDAT 3 16-DEC-20 5ZWW 1 OBSLTE HETSYN REVDAT 2 29-JUL-20 5ZWW 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 13-JUN-18 5ZWW 0 SPRSDE 13-JUN-18 5ZWW 3NYH JRNL AUTH P.K.SINGH,A.K.SINGH,S.SHARMA,T.P.SINGH JRNL TITL CRYSTAL STRUCTURE OF THE COMPLEX OF LACTOPEROXIDASE WITH JRNL TITL 2 HYDROGEN PEROXIDE AT 1.77A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 58381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3107 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4044 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 219 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4770 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 180 REMARK 3 SOLVENT ATOMS : 750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : -1.00000 REMARK 3 B33 (A**2) : 1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.011 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5076 ; 0.012 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 4465 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6874 ; 1.699 ; 1.698 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10488 ; 1.000 ; 1.668 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 594 ; 7.365 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 277 ;34.354 ;21.841 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 825 ;14.771 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;16.471 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 632 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5654 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 963 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2389 ; 2.944 ; 3.122 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2381 ; 2.926 ; 3.119 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2979 ; 4.720 ; 4.672 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2973 ; 4.720 ; 4.678 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2687 ; 3.115 ; 3.382 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2687 ; 3.115 ; 3.382 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3896 ; 4.781 ; 4.991 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6176 ; 9.810 ;38.657 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6177 ; 9.811 ;38.655 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZWW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300007806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5-8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62590 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 34.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 0.3910 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42000 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3GC1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM IODIDE, PEG 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 6.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.91850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1261 O HOH A 1326 1.06 REMARK 500 OD2 ASP A 108 CMD HEM A 601 1.56 REMARK 500 OE2 GLU A 258 CMB HEM A 601 1.61 REMARK 500 OD1 ASP A 578 O HOH A 701 1.70 REMARK 500 O HOH A 884 O HOH A 1094 1.86 REMARK 500 O HOH A 887 O HOH A 1376 1.86 REMARK 500 OD1 ASN A 138 O HOH A 703 1.90 REMARK 500 N OSM A 626 O HOH A 704 1.97 REMARK 500 OD1 ASP A 410 O HOH A 705 1.97 REMARK 500 O HOH A 1247 O HOH A 1320 1.99 REMARK 500 NE2 HIS A 109 O1 PEO A 637 2.02 REMARK 500 O LYS A 126 O HOH A 706 2.02 REMARK 500 NE2 GLN A 423 O HOH A 707 2.07 REMARK 500 O HOH A 1202 O HOH A 1239 2.09 REMARK 500 O HOH A 843 O HOH A 1363 2.14 REMARK 500 N THR A 463 O OSM A 625 2.14 REMARK 500 O HOH A 937 O HOH A 1194 2.15 REMARK 500 O HIS A 574 O HOH A 708 2.18 REMARK 500 O1 PEO A 637 O2 PEO A 638 2.19 REMARK 500 O HOH A 914 O HOH A 1038 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 891 O HOH A 1206 2545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 167 CB - CA - C ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 3 -8.44 70.63 REMARK 500 VAL A 4 73.59 33.85 REMARK 500 ALA A 8 -60.63 -104.94 REMARK 500 PRO A 9 -73.74 -41.38 REMARK 500 VAL A 13 79.26 -118.80 REMARK 500 CYS A 28 8.73 83.97 REMARK 500 LEU A 55 -51.68 -124.86 REMARK 500 ALA A 56 -25.95 -152.24 REMARK 500 ASP A 137 -113.05 51.80 REMARK 500 CYS A 167 -99.46 106.97 REMARK 500 PRO A 170 -133.15 -70.56 REMARK 500 SER A 174 -51.39 120.26 REMARK 500 ASP A 188 13.69 -141.88 REMARK 500 PRO A 209 41.29 -89.48 REMARK 500 LYS A 232 118.94 -173.02 REMARK 500 GLU A 371 51.86 -116.60 REMARK 500 ASP A 389 38.63 -159.52 REMARK 500 THR A 425 -5.17 102.63 REMARK 500 LYS A 427 -31.69 76.89 REMARK 500 ASN A 473 109.68 -163.56 REMARK 500 LYS A 485 -34.50 81.98 REMARK 500 GLU A 594 -51.70 -130.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 67 0.08 SIDE CHAIN REMARK 500 ARG A 278 0.09 SIDE CHAIN REMARK 500 ARG A 397 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1448 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1449 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1450 DISTANCE = 5.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 O REMARK 620 2 ASP A 110 OD1 75.7 REMARK 620 3 THR A 184 O 77.2 137.8 REMARK 620 4 THR A 184 OG1 129.9 150.1 70.4 REMARK 620 5 PHE A 186 O 119.5 78.1 88.1 96.8 REMARK 620 6 ASP A 188 OD1 142.7 77.7 138.8 72.4 79.3 REMARK 620 7 SER A 190 OG 78.0 90.4 114.6 82.0 154.9 76.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 622 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 222 ND1 REMARK 620 2 GLU A 538 OE2 131.1 REMARK 620 3 HIS A 558 ND1 108.7 23.1 REMARK 620 4 HOH A1242 O 114.0 89.5 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 601 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 351 NE2 REMARK 620 2 HEM A 601 NA 100.4 REMARK 620 3 HEM A 601 NB 97.2 90.4 REMARK 620 4 HEM A 601 NC 91.1 168.5 88.5 REMARK 620 5 HEM A 601 ND 91.7 88.6 171.2 90.8 REMARK 620 6 PEO A 637 O2 177.8 78.7 84.9 89.8 86.3 REMARK 620 N 1 2 3 4 5 DBREF 5ZWW A 1 595 UNP P80025 PERL_BOVIN 118 712 SEQRES 1 A 595 SER TRP GLU VAL GLY CYS GLY ALA PRO VAL PRO LEU VAL SEQRES 2 A 595 LYS CYS ASP GLU ASN SER PRO TYR ARG THR ILE THR GLY SEQRES 3 A 595 ASP CYS ASN ASN ARG ARG SER PRO ALA LEU GLY ALA ALA SEQRES 4 A 595 ASN ARG ALA LEU ALA ARG TRP LEU PRO ALA GLU TYR GLU SEQRES 5 A 595 ASP GLY LEU ALA LEU PRO PHE GLY TRP THR GLN ARG LYS SEQRES 6 A 595 THR ARG ASN GLY PHE ARG VAL PRO LEU ALA ARG GLU VAL SEQRES 7 A 595 SER ASN LYS ILE VAL GLY TYR LEU ASP GLU GLU GLY VAL SEQRES 8 A 595 LEU ASP GLN ASN ARG SER LEU LEU PHE MET GLN TRP GLY SEQRES 9 A 595 GLN ILE VAL ASP HIS ASP LEU ASP PHE ALA PRO GLU THR SEQRES 10 A 595 GLU LEU GLY SER ASN GLU HIS SER LYS THR GLN CYS GLU SEQRES 11 A 595 GLU TYR CYS ILE GLN GLY ASP ASN CYS PHE PRO ILE MET SEQRES 12 A 595 PHE PRO LYS ASN ASP PRO LYS LEU LYS THR GLN GLY LYS SEQRES 13 A 595 CYS MET PRO PHE PHE ARG ALA GLY PHE VAL CYS PRO THR SEQRES 14 A 595 PRO PRO TYR GLN SER LEU ALA ARG GLU GLN ILE ASN ALA SEQRES 15 A 595 VAL THR SER PHE LEU ASP ALA SER LEU VAL TYR GLY SER SEQRES 16 A 595 GLU PRO SER LEU ALA SER ARG LEU ARG ASN LEU SER SER SEQRES 17 A 595 PRO LEU GLY LEU MET ALA VAL ASN GLN GLU ALA TRP ASP SEQRES 18 A 595 HIS GLY LEU ALA TYR LEU PRO PHE ASN ASN LYS LYS PRO SEQRES 19 A 595 SER PRO CYS GLU PHE ILE ASN THR THR ALA ARG VAL PRO SEQRES 20 A 595 CYS PHE LEU ALA GLY ASP PHE ARG ALA SER GLU GLN ILE SEQRES 21 A 595 LEU LEU ALA THR ALA HIS THR LEU LEU LEU ARG GLU HIS SEQRES 22 A 595 ASN ARG LEU ALA ARG GLU LEU LYS LYS LEU ASN PRO HIS SEQRES 23 A 595 TRP ASN GLY GLU LYS LEU TYR GLN GLU ALA ARG LYS ILE SEQRES 24 A 595 LEU GLY ALA PHE ILE GLN ILE ILE THR PHE ARG ASP TYR SEQRES 25 A 595 LEU PRO ILE VAL LEU GLY SER GLU MET GLN LYS TRP ILE SEQRES 26 A 595 PRO PRO TYR GLN GLY TYR ASN ASN SER VAL ASP PRO ARG SEQRES 27 A 595 ILE SER ASN VAL PHE THR PHE ALA PHE ARG PHE GLY HIS SEQRES 28 A 595 MET GLU VAL PRO SER THR VAL SER ARG LEU ASP GLU ASN SEQRES 29 A 595 TYR GLN PRO TRP GLY PRO GLU ALA GLU LEU PRO LEU HIS SEQRES 30 A 595 THR LEU PHE PHE ASN THR TRP ARG ILE ILE LYS ASP GLY SEQRES 31 A 595 GLY ILE ASP PRO LEU VAL ARG GLY LEU LEU ALA LYS LYS SEQRES 32 A 595 SER LYS LEU MET ASN GLN ASP LYS MET VAL THR SER GLU SEQRES 33 A 595 LEU ARG ASN LYS LEU PHE GLN PRO THR HIS LYS ILE HIS SEQRES 34 A 595 GLY PHE ASP LEU ALA ALA ILE ASN LEU GLN ARG CYS ARG SEQRES 35 A 595 ASP HIS GLY MET PRO GLY TYR ASN SER TRP ARG GLY PHE SEQRES 36 A 595 CYS GLY LEU SER GLN PRO LYS THR LEU LYS GLY LEU GLN SEQRES 37 A 595 THR VAL LEU LYS ASN LYS ILE LEU ALA LYS LYS LEU MET SEQRES 38 A 595 ASP LEU TYR LYS THR PRO ASP ASN ILE ASP ILE TRP ILE SEQRES 39 A 595 GLY GLY ASN ALA GLU PRO MET VAL GLU ARG GLY ARG VAL SEQRES 40 A 595 GLY PRO LEU LEU ALA CYS LEU LEU GLY ARG GLN PHE GLN SEQRES 41 A 595 GLN ILE ARG ASP GLY ASP ARG PHE TRP TRP GLU ASN PRO SEQRES 42 A 595 GLY VAL PHE THR GLU LYS GLN ARG ASP SER LEU GLN LYS SEQRES 43 A 595 VAL SER PHE SER ARG LEU ILE CYS ASP ASN THR HIS ILE SEQRES 44 A 595 THR LYS VAL PRO LEU HIS ALA PHE GLN ALA ASN ASN TYR SEQRES 45 A 595 PRO HIS ASP PHE VAL ASP CYS SER THR VAL ASP LYS LEU SEQRES 46 A 595 ASP LEU SER PRO TRP ALA SER ARG GLU ASN HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET HEM A 601 43 HET CA A 602 1 HET NAG A 607 14 HET IOD A 608 1 HET IOD A 609 1 HET IOD A 610 1 HET IOD A 611 1 HET IOD A 612 1 HET IOD A 613 1 HET IOD A 614 1 HET IOD A 615 1 HET IOD A 616 1 HET IOD A 617 1 HET IOD A 618 1 HET IOD A 619 1 HET GOL A 620 6 HET EDO A 621 4 HET ZN A 622 1 HET OSM A 623 4 HET OSM A 624 4 HET OSM A 625 4 HET OSM A 626 4 HET OSM A 627 4 HET OSM A 628 4 HET OSM A 629 4 HET IOD A 630 1 HET IOD A 631 1 HET IOD A 632 1 HET IOD A 633 1 HET IOD A 634 1 HET IOD A 635 1 HET IOD A 636 1 HET PEO A 637 2 HET PEO A 638 2 HET PEO A 639 2 HET PEO A 640 2 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION HETNAM IOD IODIDE ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETNAM OSM 1-(OXIDOSULFANYL)METHANAMINE HETNAM PEO HYDROGEN PEROXIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 4 HEM C34 H32 FE N4 O4 FORMUL 5 CA CA 2+ FORMUL 7 IOD 19(I 1-) FORMUL 19 GOL C3 H8 O3 FORMUL 20 EDO C2 H6 O2 FORMUL 21 ZN ZN 2+ FORMUL 22 OSM 7(C H5 N O S) FORMUL 36 PEO 4(H2 O2) FORMUL 40 HOH *750(H2 O) HELIX 1 AA1 SER A 1 GLY A 5 5 5 HELIX 2 AA2 LEU A 74 VAL A 83 1 10 HELIX 3 AA3 LEU A 98 ASP A 112 1 15 HELIX 4 AA4 HIS A 124 CYS A 133 1 10 HELIX 5 AA5 ASP A 148 GLY A 155 1 8 HELIX 6 AA6 ALA A 189 GLY A 194 1 6 HELIX 7 AA7 GLU A 196 LEU A 203 1 8 HELIX 8 AA8 SER A 235 ILE A 240 1 6 HELIX 9 AA9 GLN A 259 ASN A 284 1 26 HELIX 10 AB1 ASN A 288 ASP A 311 1 24 HELIX 11 AB2 ASP A 311 GLY A 318 1 8 HELIX 12 AB3 GLU A 320 ILE A 325 1 6 HELIX 13 AB4 SER A 340 PHE A 347 1 8 HELIX 14 AB5 ARG A 348 VAL A 354 5 7 HELIX 15 AB6 HIS A 377 PHE A 380 5 4 HELIX 16 AB7 THR A 383 LYS A 388 1 6 HELIX 17 AB8 ILE A 392 LYS A 402 1 11 HELIX 18 AB9 THR A 414 ASN A 419 1 6 HELIX 19 AC1 ASP A 432 HIS A 444 1 13 HELIX 20 AC2 GLY A 448 CYS A 456 1 9 HELIX 21 AC3 THR A 463 LYS A 472 1 10 HELIX 22 AC4 ASN A 473 LYS A 485 1 13 HELIX 23 AC5 THR A 486 ILE A 490 5 5 HELIX 24 AC6 ASP A 491 GLU A 499 1 9 HELIX 25 AC7 GLY A 508 GLY A 525 1 18 HELIX 26 AC8 THR A 537 GLN A 545 1 9 HELIX 27 AC9 SER A 548 THR A 557 1 10 HELIX 28 AD1 SER A 580 VAL A 582 5 3 HELIX 29 AD2 LEU A 587 ALA A 591 5 5 SHEET 1 AA1 2 ARG A 41 ALA A 42 0 SHEET 2 AA1 2 ILE A 180 ASN A 181 -1 O ASN A 181 N ARG A 41 SHEET 1 AA2 2 LEU A 92 SER A 97 0 SHEET 2 AA2 2 LYS A 403 LYS A 405 -1 O SER A 404 N ASP A 93 SHEET 1 AA3 2 ILE A 142 MET A 143 0 SHEET 2 AA3 2 CYS A 157 MET A 158 -1 O MET A 158 N ILE A 142 SHEET 1 AA4 2 THR A 357 SER A 359 0 SHEET 2 AA4 2 GLU A 373 PRO A 375 -1 O LEU A 374 N VAL A 358 SHEET 1 AA5 2 LEU A 421 PHE A 422 0 SHEET 2 AA5 2 HIS A 429 PHE A 431 -1 O PHE A 431 N LEU A 421 SHEET 1 AA6 2 LYS A 561 PRO A 563 0 SHEET 2 AA6 2 PHE A 576 ASP A 578 -1 O VAL A 577 N VAL A 562 SSBOND 1 CYS A 6 CYS A 167 1555 1555 2.05 SSBOND 2 CYS A 15 CYS A 28 1555 1555 2.05 SSBOND 3 CYS A 129 CYS A 139 1555 1555 2.04 SSBOND 4 CYS A 133 CYS A 157 1555 1555 2.05 SSBOND 5 CYS A 237 CYS A 248 1555 1555 2.03 SSBOND 6 CYS A 456 CYS A 513 1555 1555 2.03 SSBOND 7 CYS A 554 CYS A 579 1555 1555 2.02 LINK ND2 ASN A 205 C1 NAG B 1 1555 1555 1.42 LINK ND2 ASN A 241 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 332 C1 NAG A 607 1555 1555 1.44 LINK I IOD A 617 O OSM A 624 1555 1555 2.18 LINK I IOD A 618 O OSM A 625 1555 1555 2.28 LINK O OSM A 628 I IOD A 634 1555 1555 2.14 LINK S OSM A 628 I IOD A 634 1555 1555 2.84 LINK I IOD A 632 O1 PEO A 640 1555 1555 2.25 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.47 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O ASP A 110 CA CA A 602 1555 1555 2.24 LINK OD1 ASP A 110 CA CA A 602 1555 1555 2.38 LINK O THR A 184 CA CA A 602 1555 1555 2.41 LINK OG1 THR A 184 CA CA A 602 1555 1555 2.43 LINK O PHE A 186 CA CA A 602 1555 1555 2.28 LINK OD1 ASP A 188 CA CA A 602 1555 1555 2.44 LINK OG SER A 190 CA CA A 602 1555 1555 2.43 LINK ND1 HIS A 222 ZN ZN A 622 1555 1555 1.96 LINK NE2 HIS A 351 FE HEM A 601 1555 1555 2.15 LINK OE2 GLU A 538 ZN ZN A 622 1555 2545 2.05 LINK ND1 HIS A 558 ZN ZN A 622 1555 1555 2.10 LINK FE HEM A 601 O2 PEO A 637 1555 1555 2.24 LINK ZN ZN A 622 O HOH A1242 1555 2555 2.19 CISPEP 1 LYS A 233 PRO A 234 0 -4.68 CISPEP 2 TYR A 572 PRO A 573 0 6.34 CRYST1 54.231 79.837 77.548 90.00 102.67 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018440 0.000000 0.004145 0.00000 SCALE2 0.000000 0.012526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013217 0.00000 CONECT 46 1320 CONECT 106 207 CONECT 207 106 CONECT 865 4871 CONECT 868 4871 CONECT 1015 1094 CONECT 1051 1239 CONECT 1094 1015 CONECT 1239 1051 CONECT 1320 46 CONECT 1449 4871 CONECT 1451 4871 CONECT 1462 4871 CONECT 1484 4871 CONECT 1496 4871 CONECT 1612 4772 CONECT 1739 4908 CONECT 1857 1943 CONECT 1893 4800 CONECT 1943 1857 CONECT 2642 4872 CONECT 2799 4870 CONECT 3651 4087 CONECT 4087 3651 CONECT 4439 4643 CONECT 4469 4908 CONECT 4643 4439 CONECT 4772 1612 4773 4783 CONECT 4773 4772 4774 4780 CONECT 4774 4773 4775 4781 CONECT 4775 4774 4776 4782 CONECT 4776 4775 4777 4783 CONECT 4777 4776 4784 CONECT 4778 4779 4780 4785 CONECT 4779 4778 CONECT 4780 4773 4778 CONECT 4781 4774 CONECT 4782 4775 4786 CONECT 4783 4772 4776 CONECT 4784 4777 CONECT 4785 4778 CONECT 4786 4782 4787 4797 CONECT 4787 4786 4788 4794 CONECT 4788 4787 4789 4795 CONECT 4789 4788 4790 4796 CONECT 4790 4789 4791 4797 CONECT 4791 4790 4798 CONECT 4792 4793 4794 4799 CONECT 4793 4792 CONECT 4794 4787 4792 CONECT 4795 4788 CONECT 4796 4789 CONECT 4797 4786 4790 CONECT 4798 4791 CONECT 4799 4792 CONECT 4800 1893 4801 4811 CONECT 4801 4800 4802 4808 CONECT 4802 4801 4803 4809 CONECT 4803 4802 4804 4810 CONECT 4804 4803 4805 4811 CONECT 4805 4804 4812 CONECT 4806 4807 4808 4813 CONECT 4807 4806 CONECT 4808 4801 4806 CONECT 4809 4802 CONECT 4810 4803 4814 CONECT 4811 4800 4804 CONECT 4812 4805 CONECT 4813 4806 CONECT 4814 4810 4815 4825 CONECT 4815 4814 4816 4822 CONECT 4816 4815 4817 4823 CONECT 4817 4816 4818 4824 CONECT 4818 4817 4819 4825 CONECT 4819 4818 4826 CONECT 4820 4821 4822 4827 CONECT 4821 4820 CONECT 4822 4815 4820 CONECT 4823 4816 CONECT 4824 4817 CONECT 4825 4814 4818 CONECT 4826 4819 CONECT 4827 4820 CONECT 4828 4832 4859 CONECT 4829 4835 4842 CONECT 4830 4845 4849 CONECT 4831 4852 4856 CONECT 4832 4828 4833 4866 CONECT 4833 4832 4834 4837 CONECT 4834 4833 4835 4836 CONECT 4835 4829 4834 4866 CONECT 4836 4834 CONECT 4837 4833 4838 CONECT 4838 4837 4839 CONECT 4839 4838 4840 4841 CONECT 4840 4839 CONECT 4841 4839 CONECT 4842 4829 4843 4867 CONECT 4843 4842 4844 4846 CONECT 4844 4843 4845 4847 CONECT 4845 4830 4844 4867 CONECT 4846 4843 CONECT 4847 4844 4848 CONECT 4848 4847 CONECT 4849 4830 4850 4868 CONECT 4850 4849 4851 4853 CONECT 4851 4850 4852 4854 CONECT 4852 4831 4851 4868 CONECT 4853 4850 CONECT 4854 4851 4855 CONECT 4855 4854 CONECT 4856 4831 4857 4869 CONECT 4857 4856 4858 4860 CONECT 4858 4857 4859 4861 CONECT 4859 4828 4858 4869 CONECT 4860 4857 CONECT 4861 4858 4862 CONECT 4862 4861 4863 CONECT 4863 4862 4864 4865 CONECT 4864 4863 CONECT 4865 4863 CONECT 4866 4832 4835 4870 CONECT 4867 4842 4845 4870 CONECT 4868 4849 4852 4870 CONECT 4869 4856 4859 4870 CONECT 4870 2799 4866 4867 4868 CONECT 4870 4869 4945 CONECT 4871 865 868 1449 1451 CONECT 4871 1462 1484 1496 CONECT 4872 2642 4873 4883 CONECT 4873 4872 4874 4880 CONECT 4874 4873 4875 4881 CONECT 4875 4874 4876 4882 CONECT 4876 4875 4877 4883 CONECT 4877 4876 4884 CONECT 4878 4879 4880 4885 CONECT 4879 4878 CONECT 4880 4873 4878 CONECT 4881 4874 CONECT 4882 4875 CONECT 4883 4872 4876 CONECT 4884 4877 CONECT 4885 4878 CONECT 4895 4913 CONECT 4896 4917 CONECT 4898 4899 4900 CONECT 4899 4898 CONECT 4900 4898 4901 4902 CONECT 4901 4900 CONECT 4902 4900 4903 CONECT 4903 4902 CONECT 4904 4905 4906 CONECT 4905 4904 CONECT 4906 4904 4907 CONECT 4907 4906 CONECT 4908 1739 4469 CONECT 4909 4910 CONECT 4910 4909 4911 CONECT 4911 4910 4912 CONECT 4912 4911 CONECT 4913 4895 4914 CONECT 4914 4913 4915 CONECT 4915 4914 4916 CONECT 4916 4915 CONECT 4917 4896 4918 CONECT 4918 4917 4919 CONECT 4919 4918 4920 CONECT 4920 4919 CONECT 4921 4922 CONECT 4922 4921 4923 CONECT 4923 4922 4924 CONECT 4924 4923 CONECT 4925 4926 CONECT 4926 4925 4927 CONECT 4927 4926 4928 CONECT 4928 4927 CONECT 4929 4930 4941 CONECT 4930 4929 4931 4941 CONECT 4931 4930 4932 CONECT 4932 4931 CONECT 4933 4934 CONECT 4934 4933 4935 CONECT 4935 4934 4936 CONECT 4936 4935 CONECT 4939 4950 CONECT 4941 4929 4930 CONECT 4944 4945 CONECT 4945 4870 4944 CONECT 4946 4947 CONECT 4947 4946 CONECT 4948 4949 CONECT 4949 4948 CONECT 4950 4939 4951 CONECT 4951 4950 MASTER 401 0 40 29 12 0 0 6 5700 1 194 46 END