HEADER GENE REGULATION 17-MAY-18 5ZWZ TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA AGDP1 AGD34 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGENET DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AT1G09320; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT1G09320, T31J12.4, T31J12_4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMBP KEYWDS AGENET DOMAIN, AGDP1, EPIGENETICS, H3K9ME2, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR X.DU,J.DU REVDAT 1 14-NOV-18 5ZWZ 0 JRNL AUTH C.ZHANG,X.DU,K.TANG,Z.YANG,L.PAN,P.ZHU,J.LUO,Y.JIANG, JRNL AUTH 2 H.ZHANG,H.WAN,X.WANG,F.WU,W.A.TAO,X.J.HE,H.ZHANG, JRNL AUTH 3 R.A.BRESSAN,J.DU,J.K.ZHU JRNL TITL ARABIDOPSIS AGDP1 LINKS H3K9ME2 TO DNA METHYLATION IN JRNL TITL 2 HETEROCHROMATIN JRNL REF NAT COMMUN V. 9 4547 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30382101 JRNL DOI 10.1038/S41467-018-06965-W REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.770 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 14321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2000 - 4.1589 1.00 2709 124 0.1736 0.1821 REMARK 3 2 4.1589 - 3.3016 1.00 2698 126 0.1817 0.2261 REMARK 3 3 3.3016 - 2.8844 1.00 2674 158 0.2175 0.2390 REMARK 3 4 2.8844 - 2.6207 1.00 2711 115 0.2506 0.2072 REMARK 3 5 2.6207 - 2.4329 1.00 2708 135 0.2267 0.2586 REMARK 3 6 2.4329 - 2.2895 1.00 2613 185 0.2232 0.2310 REMARK 3 7 2.2895 - 2.1748 1.00 2709 159 0.2205 0.2454 REMARK 3 8 2.1748 - 2.0801 1.00 2673 142 0.2110 0.2109 REMARK 3 9 2.0801 - 2.0001 0.98 2645 144 0.2291 0.2539 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1216 REMARK 3 ANGLE : 0.845 1644 REMARK 3 CHIRALITY : 0.033 167 REMARK 3 PLANARITY : 0.003 217 REMARK 3 DIHEDRAL : 14.906 449 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 206 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8724 28.7518 95.2933 REMARK 3 T TENSOR REMARK 3 T11: 0.4102 T22: 0.2919 REMARK 3 T33: 0.4974 T12: -0.0152 REMARK 3 T13: -0.0435 T23: -0.1093 REMARK 3 L TENSOR REMARK 3 L11: 3.6866 L22: 2.0419 REMARK 3 L33: 2.7340 L12: -0.2434 REMARK 3 L13: -0.2725 L23: 0.8140 REMARK 3 S TENSOR REMARK 3 S11: -0.2841 S12: -0.1481 S13: 0.7009 REMARK 3 S21: 0.0375 S22: 0.2739 S23: -0.2789 REMARK 3 S31: -0.2502 S32: 0.1180 S33: -0.4598 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0557 22.1763 89.7571 REMARK 3 T TENSOR REMARK 3 T11: 0.7832 T22: 0.7590 REMARK 3 T33: 1.1176 T12: -0.0173 REMARK 3 T13: -0.0954 T23: 0.0621 REMARK 3 L TENSOR REMARK 3 L11: 6.6119 L22: 3.8251 REMARK 3 L33: 3.4699 L12: -1.0792 REMARK 3 L13: 2.1272 L23: -2.6289 REMARK 3 S TENSOR REMARK 3 S11: -0.0919 S12: 0.5529 S13: 1.4867 REMARK 3 S21: -0.2720 S22: 0.3106 S23: 1.8860 REMARK 3 S31: -0.4106 S32: -1.2277 S33: -0.0286 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7960 23.2094 86.4066 REMARK 3 T TENSOR REMARK 3 T11: 0.5455 T22: 0.3551 REMARK 3 T33: 0.4776 T12: -0.0353 REMARK 3 T13: 0.1068 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 5.2807 L22: 3.7744 REMARK 3 L33: 4.5819 L12: 0.2381 REMARK 3 L13: -1.3138 L23: 0.5988 REMARK 3 S TENSOR REMARK 3 S11: 0.1685 S12: 0.2247 S13: 0.6067 REMARK 3 S21: -0.6097 S22: 0.1318 S23: -0.5128 REMARK 3 S31: -0.5689 S32: 0.0946 S33: -0.1467 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 259 THROUGH 281 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1218 18.1316 84.6617 REMARK 3 T TENSOR REMARK 3 T11: 0.4369 T22: 0.3615 REMARK 3 T33: 0.3195 T12: 0.0074 REMARK 3 T13: -0.0211 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 2.4643 L22: 2.5832 REMARK 3 L33: 2.4170 L12: 0.2936 REMARK 3 L13: -0.6053 L23: 2.2497 REMARK 3 S TENSOR REMARK 3 S11: -0.1402 S12: 0.4773 S13: 0.1750 REMARK 3 S21: -0.6296 S22: -0.1502 S23: 0.1893 REMARK 3 S31: -0.4255 S32: -0.0982 S33: -0.0055 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 282 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3345 11.9292 108.8124 REMARK 3 T TENSOR REMARK 3 T11: 0.6590 T22: 0.5908 REMARK 3 T33: 0.5094 T12: 0.1740 REMARK 3 T13: 0.0891 T23: 0.0526 REMARK 3 L TENSOR REMARK 3 L11: 2.9053 L22: 2.0130 REMARK 3 L33: 2.6687 L12: 2.1915 REMARK 3 L13: -2.4282 L23: -1.2287 REMARK 3 S TENSOR REMARK 3 S11: -0.4501 S12: -1.5150 S13: -0.9622 REMARK 3 S21: 0.4649 S22: 0.0055 S23: -0.5454 REMARK 3 S31: 0.7721 S32: 0.9199 S33: 0.2975 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9346 9.8676 101.8812 REMARK 3 T TENSOR REMARK 3 T11: 0.3466 T22: 0.2538 REMARK 3 T33: 0.3901 T12: 0.0111 REMARK 3 T13: 0.0145 T23: -0.0733 REMARK 3 L TENSOR REMARK 3 L11: 3.7121 L22: 2.7589 REMARK 3 L33: 2.7783 L12: 0.5255 REMARK 3 L13: -1.5256 L23: 0.8575 REMARK 3 S TENSOR REMARK 3 S11: -0.1956 S12: 0.0970 S13: -0.1472 REMARK 3 S21: 0.1439 S22: 0.2449 S23: 0.2069 REMARK 3 S31: 0.1468 S32: -0.0475 S33: 0.2333 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 351 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5315 15.0257 102.7550 REMARK 3 T TENSOR REMARK 3 T11: 0.4308 T22: 0.2794 REMARK 3 T33: 0.3157 T12: 0.0064 REMARK 3 T13: -0.0023 T23: -0.0891 REMARK 3 L TENSOR REMARK 3 L11: 4.8362 L22: 3.4021 REMARK 3 L33: 1.9292 L12: 0.5241 REMARK 3 L13: -1.8429 L23: -1.0665 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: -0.1235 S13: 0.1632 REMARK 3 S21: 0.1090 S22: -0.0981 S23: 0.4386 REMARK 3 S31: -0.0260 S32: -0.0469 S33: 0.1494 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZWZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300007807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14321 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 15.60 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 56.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 17.80 REMARK 200 R MERGE FOR SHELL (I) : 0.24100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 17.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5M SODIUM FORMATE, 0.1M HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 137.62000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.81000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 103.21500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.40500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 172.02500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 137.62000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 68.81000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.40500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 103.21500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 172.02500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 457 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 198 REMARK 465 GLU A 199 REMARK 465 ASP A 200 REMARK 465 GLU A 201 REMARK 465 GLU A 202 REMARK 465 ASP A 203 REMARK 465 ILE A 204 REMARK 465 LEU A 205 REMARK 465 LEU A 352 REMARK 465 LYS A 353 REMARK 465 GLY A 354 REMARK 465 GLY A 355 REMARK 465 LYS A 356 REMARK 465 ILE A 357 REMARK 465 LYS A 358 REMARK 465 ARG A 359 REMARK 465 GLU A 360 REMARK 465 LYS A 361 REMARK 465 THR A 362 REMARK 465 VAL A 363 REMARK 465 SER A 364 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 286 93.20 14.89 REMARK 500 REMARK 500 REMARK: NULL DBREF 5ZWZ A 198 364 UNP Q500V5 Q500V5_ARATH 198 364 SEQRES 1 A 167 SER GLU ASP GLU GLU ASP ILE LEU ALA ARG VAL ASP LEU SEQRES 2 A 167 GLU THR THR ARG ALA ILE ALA LYS GLN MSE PHE SER SER SEQRES 3 A 167 GLY THR VAL VAL GLU VAL SER SER ASP GLU GLU GLY PHE SEQRES 4 A 167 GLN GLY CYS TRP PHE ALA ALA LYS VAL VAL GLU PRO VAL SEQRES 5 A 167 GLY GLU ASP LYS PHE LEU VAL GLU TYR ARG ASP LEU ARG SEQRES 6 A 167 GLU LYS ASP GLY ILE GLU PRO LEU LYS GLU GLU THR ASP SEQRES 7 A 167 PHE LEU HIS ILE ARG PRO PRO PRO PRO ARG ASP GLU ASP SEQRES 8 A 167 ILE ASP PHE ALA VAL GLY ASP LYS ILE ASN ALA PHE TYR SEQRES 9 A 167 ASN ASP GLY TRP TRP VAL GLY VAL VAL ILE ASP GLY MSE SEQRES 10 A 167 LYS HIS GLY THR VAL GLY ILE TYR PHE ARG GLN SER GLN SEQRES 11 A 167 GLU LYS MSE ARG PHE GLY ARG GLN GLY LEU ARG LEU HIS SEQRES 12 A 167 LYS ASP TRP VAL ASP GLY THR TRP GLN LEU PRO LEU LYS SEQRES 13 A 167 GLY GLY LYS ILE LYS ARG GLU LYS THR VAL SER MODRES 5ZWZ MSE A 220 MET MODIFIED RESIDUE MODRES 5ZWZ MSE A 314 MET MODIFIED RESIDUE MODRES 5ZWZ MSE A 330 MET MODIFIED RESIDUE HET MSE A 220 8 HET MSE A 314 8 HET MSE A 330 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 HOH *87(H2 O) HELIX 1 AA1 ASP A 209 PHE A 221 1 13 SHEET 1 AA1 6 PRO A 269 ASP A 275 0 SHEET 2 AA1 6 LYS A 253 ARG A 262 -1 N TYR A 258 O LEU A 270 SHEET 3 AA1 6 CYS A 239 VAL A 249 -1 N VAL A 249 O LYS A 253 SHEET 4 AA1 6 GLY A 304 LYS A 315 -1 O TRP A 305 N TRP A 240 SHEET 5 AA1 6 THR A 318 PHE A 323 -1 O THR A 318 N LYS A 315 SHEET 6 AA1 6 GLU A 328 GLY A 333 -1 O GLU A 328 N PHE A 323 SHEET 1 AA2 6 ILE A 279 ARG A 280 0 SHEET 2 AA2 6 VAL A 226 VAL A 229 -1 N GLU A 228 O ARG A 280 SHEET 3 AA2 6 CYS A 239 VAL A 249 -1 O PHE A 241 N VAL A 229 SHEET 4 AA2 6 GLY A 304 LYS A 315 -1 O TRP A 305 N TRP A 240 SHEET 5 AA2 6 LYS A 296 TYR A 301 -1 N ALA A 299 O TRP A 306 SHEET 6 AA2 6 LEU A 337 LEU A 339 -1 O ARG A 338 N ASN A 298 SHEET 1 AA3 2 ASP A 342 VAL A 344 0 SHEET 2 AA3 2 THR A 347 GLN A 349 -1 O THR A 347 N VAL A 344 LINK C GLN A 219 N MSE A 220 1555 1555 1.33 LINK C MSE A 220 N PHE A 221 1555 1555 1.33 LINK C GLY A 313 N MSE A 314 1555 1555 1.33 LINK C MSE A 314 N LYS A 315 1555 1555 1.33 LINK C LYS A 329 N MSE A 330 1555 1555 1.33 LINK C MSE A 330 N ARG A 331 1555 1555 1.33 CRYST1 57.177 57.177 206.430 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017490 0.010098 0.000000 0.00000 SCALE2 0.000000 0.020195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004844 0.00000