HEADER PROTEIN BINDING 18-MAY-18 5ZX9 TITLE CRYSTAL STRUCTURE OF APO FORM FIBRONECTIN-BINDING PROTEIN APA FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE AND PROLINE-RICH SECRETED PROTEIN APA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 45 KDA GLYCOPROTEIN,45/47 KDA ANTIGEN,ANTIGEN MPT-32,FAP-B, COMPND 5 FIBRONECTIN ATTACHMENT PROTEIN,IMMUNOGENIC PROTEIN MPT32; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: 1860C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET46EK/LIC KEYWDS SUBSTRATE BINDING, CYCLOLAVANDULYL DIPHOSPHATE SYNTHASE, INHIBITOR, KEYWDS 2 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.GAO,W.D.LIU,C.C.CHEN,R.T.GUO REVDAT 3 27-MAR-24 5ZX9 1 REMARK REVDAT 2 11-DEC-19 5ZX9 1 TITLE JRNL REVDAT 1 29-MAY-19 5ZX9 0 JRNL AUTH C.J.KUO,J.GAO,J.W.HUANG,T.P.KO,C.ZHAI,L.MA,W.LIU,L.DAI, JRNL AUTH 2 Y.F.CHANG,T.H.CHEN,Y.HU,X.YU,R.T.GUO,C.C.CHEN JRNL TITL FUNCTIONAL AND STRUCTURAL INVESTIGATIONS OF JRNL TITL 2 FIBRONECTIN-BINDING PROTEIN APA FROM MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS. JRNL REF BIOCHIM BIOPHYS ACTA GEN V.1863 1351 2019 JRNL REF 2 SUBJ JRNL REFN ISSN 1872-8006 JRNL PMID 31175911 JRNL DOI 10.1016/J.BBAGEN.2019.06.003 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 46822 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.270 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.4820 - 3.7130 0.99 3295 147 0.1470 0.1471 REMARK 3 2 3.7130 - 2.9490 1.00 3243 145 0.1495 0.1791 REMARK 3 3 2.9490 - 2.5767 1.00 3226 144 0.1655 0.1861 REMARK 3 4 2.5767 - 2.3414 1.00 3226 143 0.1601 0.1496 REMARK 3 5 2.3414 - 2.1737 1.00 3194 144 0.1573 0.1732 REMARK 3 6 2.1737 - 2.0456 1.00 3203 142 0.1567 0.1835 REMARK 3 7 2.0456 - 1.9432 1.00 3202 143 0.1603 0.1951 REMARK 3 8 1.9432 - 1.8586 1.00 3188 142 0.1585 0.1577 REMARK 3 9 1.8586 - 1.7871 1.00 3187 143 0.1630 0.1738 REMARK 3 10 1.7871 - 1.7255 1.00 3184 141 0.1582 0.1877 REMARK 3 11 1.7255 - 1.6715 1.00 3179 143 0.1736 0.1936 REMARK 3 12 1.6715 - 1.6238 1.00 3186 142 0.1846 0.2116 REMARK 3 13 1.6238 - 1.5810 1.00 3160 141 0.2061 0.1969 REMARK 3 14 1.5810 - 1.5425 0.98 3149 140 0.2214 0.2765 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 1392 REMARK 3 ANGLE : 1.457 1910 REMARK 3 CHIRALITY : 0.109 204 REMARK 3 PLANARITY : 0.010 253 REMARK 3 DIHEDRAL : 14.514 844 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 19.1762 5.8597 72.1697 REMARK 3 T TENSOR REMARK 3 T11: 0.1747 T22: 0.1851 REMARK 3 T33: 0.1770 T12: -0.0311 REMARK 3 T13: -0.0047 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.4191 L22: 0.6193 REMARK 3 L33: 0.9458 L12: 0.2993 REMARK 3 L13: 0.0259 L23: 0.1569 REMARK 3 S TENSOR REMARK 3 S11: 0.0652 S12: -0.0692 S13: 0.0026 REMARK 3 S21: 0.0761 S22: -0.0181 S23: -0.0385 REMARK 3 S31: -0.0311 S32: 0.0718 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZX9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300007815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46832 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 16.80 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 0.99900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 0.1M HEPES PH 7.5, 0.2M REMARK 280 (NH4)2SO4, 10% ISOPROPANOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 59.33300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.25592 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 39.29800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 59.33300 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 34.25592 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 39.29800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 59.33300 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 34.25592 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.29800 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 59.33300 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 34.25592 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.29800 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 59.33300 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 34.25592 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 39.29800 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 59.33300 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 34.25592 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.29800 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 68.51185 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 78.59600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 68.51185 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 78.59600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 68.51185 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 78.59600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 68.51185 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 78.59600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 68.51185 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 78.59600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 68.51185 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 78.59600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 117.89400 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 117.89400 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 117.89400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 643 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 729 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 730 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 740 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 743 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 747 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 GLN A 3 REMARK 465 VAL A 4 REMARK 465 ASP A 5 REMARK 465 PRO A 6 REMARK 465 ASN A 7 REMARK 465 LEU A 8 REMARK 465 THR A 9 REMARK 465 ARG A 10 REMARK 465 ARG A 11 REMARK 465 LYS A 12 REMARK 465 GLY A 13 REMARK 465 ARG A 14 REMARK 465 LEU A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 ILE A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 MET A 23 REMARK 465 ALA A 24 REMARK 465 SER A 25 REMARK 465 ALA A 26 REMARK 465 SER A 27 REMARK 465 LEU A 28 REMARK 465 VAL A 29 REMARK 465 THR A 30 REMARK 465 VAL A 31 REMARK 465 ALA A 32 REMARK 465 VAL A 33 REMARK 465 PRO A 34 REMARK 465 ALA A 35 REMARK 465 THR A 36 REMARK 465 ALA A 37 REMARK 465 ASN A 38 REMARK 465 ALA A 39 REMARK 465 ASP A 40 REMARK 465 PRO A 41 REMARK 465 GLU A 42 REMARK 465 PRO A 43 REMARK 465 ALA A 44 REMARK 465 PRO A 45 REMARK 465 PRO A 46 REMARK 465 VAL A 47 REMARK 465 PRO A 48 REMARK 465 THR A 49 REMARK 465 THR A 50 REMARK 465 ALA A 51 REMARK 465 ALA A 52 REMARK 465 SER A 53 REMARK 465 PRO A 54 REMARK 465 PRO A 55 REMARK 465 SER A 56 REMARK 465 THR A 57 REMARK 465 ALA A 58 REMARK 465 ALA A 59 REMARK 465 ALA A 60 REMARK 465 PRO A 61 REMARK 465 PRO A 62 REMARK 465 ALA A 63 REMARK 465 PRO A 64 REMARK 465 ALA A 65 REMARK 465 THR A 66 REMARK 465 PRO A 67 REMARK 465 VAL A 68 REMARK 465 ALA A 69 REMARK 465 PRO A 70 REMARK 465 PRO A 71 REMARK 465 PRO A 72 REMARK 465 PRO A 73 REMARK 465 ALA A 74 REMARK 465 ALA A 75 REMARK 465 ALA A 76 REMARK 465 ASN A 77 REMARK 465 THR A 78 REMARK 465 PRO A 79 REMARK 465 ASN A 80 REMARK 465 ALA A 81 REMARK 465 GLN A 82 REMARK 465 PRO A 83 REMARK 465 GLY A 84 REMARK 465 ASP A 85 REMARK 465 PRO A 86 REMARK 465 ASN A 87 REMARK 465 ALA A 88 REMARK 465 ALA A 89 REMARK 465 PRO A 90 REMARK 465 PRO A 91 REMARK 465 PRO A 92 REMARK 465 ALA A 93 REMARK 465 ASP A 94 REMARK 465 PRO A 95 REMARK 465 ASN A 96 REMARK 465 ALA A 97 REMARK 465 PRO A 98 REMARK 465 PRO A 99 REMARK 465 PRO A 100 REMARK 465 PRO A 101 REMARK 465 VAL A 102 REMARK 465 ILE A 103 REMARK 465 ALA A 104 REMARK 465 PRO A 105 REMARK 465 ASN A 106 REMARK 465 ALA A 107 REMARK 465 PRO A 108 REMARK 465 GLN A 109 REMARK 465 ALA A 176 REMARK 465 SER A 177 REMARK 465 ALA A 178 REMARK 465 GLU A 179 REMARK 465 ALA A 247 REMARK 465 ALA A 248 REMARK 465 ASN A 249 REMARK 465 ALA A 250 REMARK 465 PRO A 251 REMARK 465 ASP A 252 REMARK 465 ALA A 253 REMARK 465 GLY A 254 REMARK 465 PRO A 255 REMARK 465 ALA A 288 REMARK 465 PRO A 289 REMARK 465 PRO A 290 REMARK 465 PRO A 291 REMARK 465 ALA A 292 REMARK 465 PRO A 293 REMARK 465 ALA A 294 REMARK 465 PRO A 295 REMARK 465 ALA A 296 REMARK 465 PRO A 297 REMARK 465 ALA A 298 REMARK 465 GLU A 299 REMARK 465 PRO A 300 REMARK 465 ALA A 301 REMARK 465 PRO A 302 REMARK 465 ALA A 303 REMARK 465 PRO A 304 REMARK 465 ALA A 305 REMARK 465 PRO A 306 REMARK 465 ALA A 307 REMARK 465 GLY A 308 REMARK 465 GLU A 309 REMARK 465 VAL A 310 REMARK 465 ALA A 311 REMARK 465 PRO A 312 REMARK 465 THR A 313 REMARK 465 PRO A 314 REMARK 465 THR A 315 REMARK 465 THR A 316 REMARK 465 PRO A 317 REMARK 465 THR A 318 REMARK 465 PRO A 319 REMARK 465 GLN A 320 REMARK 465 ARG A 321 REMARK 465 THR A 322 REMARK 465 LEU A 323 REMARK 465 PRO A 324 REMARK 465 ALA A 325 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 171 131.67 -39.12 REMARK 500 ASP A 171 -78.07 -96.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 761 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 762 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 763 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 764 DISTANCE = 6.65 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 DBREF 5ZX9 A 1 325 UNP P9WIR7 APA_MYCTU 1 325 SEQRES 1 A 325 MET HIS GLN VAL ASP PRO ASN LEU THR ARG ARG LYS GLY SEQRES 2 A 325 ARG LEU ALA ALA LEU ALA ILE ALA ALA MET ALA SER ALA SEQRES 3 A 325 SER LEU VAL THR VAL ALA VAL PRO ALA THR ALA ASN ALA SEQRES 4 A 325 ASP PRO GLU PRO ALA PRO PRO VAL PRO THR THR ALA ALA SEQRES 5 A 325 SER PRO PRO SER THR ALA ALA ALA PRO PRO ALA PRO ALA SEQRES 6 A 325 THR PRO VAL ALA PRO PRO PRO PRO ALA ALA ALA ASN THR SEQRES 7 A 325 PRO ASN ALA GLN PRO GLY ASP PRO ASN ALA ALA PRO PRO SEQRES 8 A 325 PRO ALA ASP PRO ASN ALA PRO PRO PRO PRO VAL ILE ALA SEQRES 9 A 325 PRO ASN ALA PRO GLN PRO VAL ARG ILE ASP ASN PRO VAL SEQRES 10 A 325 GLY GLY PHE SER PHE ALA LEU PRO ALA GLY TRP VAL GLU SEQRES 11 A 325 SER ASP ALA ALA HIS PHE ASP TYR GLY SER ALA LEU LEU SEQRES 12 A 325 SER LYS THR THR GLY ASP PRO PRO PHE PRO GLY GLN PRO SEQRES 13 A 325 PRO PRO VAL ALA ASN ASP THR ARG ILE VAL LEU GLY ARG SEQRES 14 A 325 LEU ASP GLN LYS LEU TYR ALA SER ALA GLU ALA THR ASP SEQRES 15 A 325 SER LYS ALA ALA ALA ARG LEU GLY SER ASP MET GLY GLU SEQRES 16 A 325 PHE TYR MET PRO TYR PRO GLY THR ARG ILE ASN GLN GLU SEQRES 17 A 325 THR VAL SER LEU ASP ALA ASN GLY VAL SER GLY SER ALA SEQRES 18 A 325 SER TYR TYR GLU VAL LYS PHE SER ASP PRO SER LYS PRO SEQRES 19 A 325 ASN GLY GLN ILE TRP THR GLY VAL ILE GLY SER PRO ALA SEQRES 20 A 325 ALA ASN ALA PRO ASP ALA GLY PRO PRO GLN ARG TRP PHE SEQRES 21 A 325 VAL VAL TRP LEU GLY THR ALA ASN ASN PRO VAL ASP LYS SEQRES 22 A 325 GLY ALA ALA LYS ALA LEU ALA GLU SER ILE ARG PRO LEU SEQRES 23 A 325 VAL ALA PRO PRO PRO ALA PRO ALA PRO ALA PRO ALA GLU SEQRES 24 A 325 PRO ALA PRO ALA PRO ALA PRO ALA GLY GLU VAL ALA PRO SEQRES 25 A 325 THR PRO THR THR PRO THR PRO GLN ARG THR LEU PRO ALA HET GOL A 401 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *264(H2 O) HELIX 1 AA1 ASP A 132 TYR A 138 5 7 HELIX 2 AA2 THR A 181 MET A 198 1 18 HELIX 3 AA3 ASP A 272 SER A 282 1 11 SHEET 1 AA1 3 ARG A 112 ASN A 115 0 SHEET 2 AA1 3 PHE A 120 ALA A 123 -1 O PHE A 122 N ILE A 113 SHEET 3 AA1 3 ARG A 284 PRO A 285 -1 O ARG A 284 N SER A 121 SHEET 1 AA2 7 TRP A 128 SER A 131 0 SHEET 2 AA2 7 SER A 140 LYS A 145 -1 O SER A 144 N VAL A 129 SHEET 3 AA2 7 ARG A 164 ARG A 169 -1 O ILE A 165 N LEU A 143 SHEET 4 AA2 7 ARG A 258 THR A 266 -1 O VAL A 262 N VAL A 166 SHEET 5 AA2 7 GLY A 236 GLY A 244 -1 N GLY A 241 O VAL A 261 SHEET 6 AA2 7 VAL A 217 PHE A 228 -1 N SER A 222 O THR A 240 SHEET 7 AA2 7 GLY A 202 ALA A 214 -1 N ALA A 214 O VAL A 217 SITE 1 AC1 6 GLU A 195 MET A 198 PRO A 199 TYR A 200 SITE 2 AC1 6 GLY A 202 HOH A 555 CRYST1 118.666 118.666 117.894 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008427 0.004865 0.000000 0.00000 SCALE2 0.000000 0.009731 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008482 0.00000