HEADER LIPID TRANSPORT 25-MAY-18 5ZYJ TITLE CRYSTAL STRUCTURE OF CERT START DOMAIN IN COMPLEX WITH COMPOUND E16A COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPID-TRANSFER PROTEIN CERT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 364-598; COMPND 5 SYNONYM: CERAMIDE TRANSFER PROTEIN,HCERT,STAR-RELATED LIPID TRANSFER COMPND 6 PROTEIN 11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CERT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469001; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28B; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B-HIS-3C-CERT START KEYWDS CERT, PH, START, COMPLEX, LIPID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.SUZUKI,N.NAKAO,M.UENO,S.SAKAI,D.EGAWA,H.HANZAWA,S.KAWASAKI, AUTHOR 2 K.KUMAGAI,S.KOBAYASHI,K.HANADA REVDAT 3 27-MAR-24 5ZYJ 1 JRNL REVDAT 2 06-MAR-19 5ZYJ 1 JRNL REVDAT 1 27-FEB-19 5ZYJ 0 JRNL AUTH N.NAKAO,M.UENO,S.SAKAI,D.EGAWA,H.HANZAWA,S.KAWASAKI, JRNL AUTH 2 K.KUMAGAI,M.SUZUKI,S.KOBAYASHI,K.HANADA JRNL TITL NATURAL LIGAND-NONMIMETIC INHIBITORS OF THE LIPID-TRANSFER JRNL TITL 2 PROTEIN CERT JRNL REF COMMUN CHEM 2019 JRNL REFN ESSN 2399 JRNL DOI 10.1038/S42004-019-0118-3 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 21335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1129 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1825 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1818 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.851 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1922 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2618 ; 2.052 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 229 ; 7.406 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;31.814 ;24.194 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 313 ;12.653 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;21.400 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 293 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1461 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5ZYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300007855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5406 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : DETECTOR NAME IS HYPIX-6000HE REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22527 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 27.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRISODIUM CITRATE/HCL BUFFER, PH REMARK 280 5.9, CONTAINING 24% PEG3350 AND 0.2% N-OCTYL-BETA-D-GLUCOSIDE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.49050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.99450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.99450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.24525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.99450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.99450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 114.73575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.99450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.99450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.24525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.99450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.99450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 114.73575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.49050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 362 REMARK 465 PRO A 363 REMARK 465 LEU A 492 REMARK 465 THR A 493 REMARK 465 PRO A 536 REMARK 465 GLU A 537 REMARK 465 GLY A 538 REMARK 465 ASN A 539 REMARK 465 GLN A 540 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 364 OG1 CG2 REMARK 470 GLN A 369 CD OE1 NE2 REMARK 470 LYS A 425 NZ REMARK 470 GLU A 494 CG CD OE1 OE2 REMARK 470 ASN A 495 CG OD1 ND2 REMARK 470 LYS A 522 NZ REMARK 470 GLU A 541 CG CD OE1 OE2 REMARK 470 LYS A 581 NZ REMARK 470 LYS A 590 CE NZ REMARK 470 LYS A 594 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 GOL A 601 O HOH A 701 2.14 REMARK 500 O HOH A 733 O HOH A 840 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 481 CB - CG - CD2 ANGL. DEV. = -12.4 DEGREES REMARK 500 CYS A 503 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 PRO A 535 C - N - CA ANGL. DEV. = 14.6 DEGREES REMARK 500 PRO A 535 C - N - CD ANGL. DEV. = -14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 416 100.70 -16.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 865 DISTANCE = 5.85 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9ML A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ZYG RELATED DB: PDB REMARK 900 RELATED ID: 5ZYH RELATED DB: PDB REMARK 900 RELATED ID: 5ZYI RELATED DB: PDB REMARK 900 RELATED ID: 5ZYK RELATED DB: PDB REMARK 900 RELATED ID: 5ZYL RELATED DB: PDB REMARK 900 RELATED ID: 5ZYM RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 TWO RESIDUES GLY362A AND PRO363A ARE ORIGINATED FROM PROTEASE SITE REMARK 999 AFTER N-TERMINAL AFFINITY TAG. THIS SEQUENCE CORRESPONDS TO THE REMARK 999 ISOFORM 2 FOUND IN UNP Q9Y5P4. DBREF 5ZYJ A 364 598 UNP Q9Y5P4 C43BP_HUMAN 364 598 SEQADV 5ZYJ GLY A 362 UNP Q9Y5P4 CONFLICT SEQADV 5ZYJ PRO A 363 UNP Q9Y5P4 CONFLICT SEQRES 1 A 237 GLY PRO THR HIS ARG PHE VAL GLN LYS VAL GLU GLU MET SEQRES 2 A 237 VAL GLN ASN HIS MET THR TYR SER LEU GLN ASP VAL GLY SEQRES 3 A 237 GLY ASP ALA ASN TRP GLN LEU VAL VAL GLU GLU GLY GLU SEQRES 4 A 237 MET LYS VAL TYR ARG ARG GLU VAL GLU GLU ASN GLY ILE SEQRES 5 A 237 VAL LEU ASP PRO LEU LYS ALA THR HIS ALA VAL LYS GLY SEQRES 6 A 237 VAL THR GLY HIS GLU VAL CYS ASN TYR PHE TRP ASN VAL SEQRES 7 A 237 ASP VAL ARG ASN ASP TRP GLU THR THR ILE GLU ASN PHE SEQRES 8 A 237 HIS VAL VAL GLU THR LEU ALA ASP ASN ALA ILE ILE ILE SEQRES 9 A 237 TYR GLN THR HIS LYS ARG VAL TRP PRO ALA SER GLN ARG SEQRES 10 A 237 ASP VAL LEU TYR LEU SER VAL ILE ARG LYS ILE PRO ALA SEQRES 11 A 237 LEU THR GLU ASN ASP PRO GLU THR TRP ILE VAL CYS ASN SEQRES 12 A 237 PHE SER VAL ASP HIS ASP SER ALA PRO LEU ASN ASN ARG SEQRES 13 A 237 CYS VAL ARG ALA LYS ILE ASN VAL ALA MET ILE CYS GLN SEQRES 14 A 237 THR LEU VAL SER PRO PRO GLU GLY ASN GLN GLU ILE SER SEQRES 15 A 237 ARG ASP ASN ILE LEU CYS LYS ILE THR TYR VAL ALA ASN SEQRES 16 A 237 VAL ASN PRO GLY GLY TRP ALA PRO ALA SER VAL LEU ARG SEQRES 17 A 237 ALA VAL ALA LYS ARG GLU TYR PRO LYS PHE LEU LYS ARG SEQRES 18 A 237 PHE THR SER TYR VAL GLN GLU LYS THR ALA GLY LYS PRO SEQRES 19 A 237 ILE LEU PHE HET 9ML A 600 32 HET GOL A 601 6 HETNAM 9ML 2-[4-[4-PENTYL-3-[(1~{S},2~{R})-2-PYRIDIN-2- HETNAM 2 9ML YLCYCLOPROPYL]PHENYL]PHENYL]SULFONYLETHANOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 9ML C27 H31 N O3 S FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *165(H2 O) HELIX 1 AA1 PHE A 367 SER A 382 1 16 HELIX 2 AA2 THR A 428 ASN A 438 1 11 HELIX 3 AA3 VAL A 441 GLU A 446 1 6 HELIX 4 AA4 SER A 543 ASP A 545 5 3 HELIX 5 AA5 PRO A 564 ALA A 592 1 29 SHEET 1 AA1 9 GLN A 393 GLU A 398 0 SHEET 2 AA1 9 MET A 401 ARG A 405 -1 O ARG A 405 N GLN A 393 SHEET 3 AA1 9 LEU A 418 LYS A 425 -1 O LYS A 419 N TYR A 404 SHEET 4 AA1 9 ILE A 547 ASN A 558 -1 O TYR A 553 N ALA A 420 SHEET 5 AA1 9 LYS A 522 VAL A 533 -1 N ILE A 528 O THR A 552 SHEET 6 AA1 9 THR A 499 SER A 506 -1 N TRP A 500 O CYS A 529 SHEET 7 AA1 9 GLN A 477 ILE A 489 -1 N ILE A 489 O THR A 499 SHEET 8 AA1 9 ALA A 462 HIS A 469 -1 N ILE A 463 O SER A 484 SHEET 9 AA1 9 ILE A 449 ALA A 459 -1 N HIS A 453 O TYR A 466 SHEET 1 AA2 8 GLN A 393 GLU A 398 0 SHEET 2 AA2 8 MET A 401 ARG A 405 -1 O ARG A 405 N GLN A 393 SHEET 3 AA2 8 LEU A 418 LYS A 425 -1 O LYS A 419 N TYR A 404 SHEET 4 AA2 8 ILE A 547 ASN A 558 -1 O TYR A 553 N ALA A 420 SHEET 5 AA2 8 LYS A 522 VAL A 533 -1 N ILE A 528 O THR A 552 SHEET 6 AA2 8 THR A 499 SER A 506 -1 N TRP A 500 O CYS A 529 SHEET 7 AA2 8 GLN A 477 ILE A 489 -1 N ILE A 489 O THR A 499 SHEET 8 AA2 8 CYS A 518 ARG A 520 1 O VAL A 519 N GLN A 477 SHEET 1 AA3 2 GLU A 409 GLU A 410 0 SHEET 2 AA3 2 ILE A 413 VAL A 414 -1 O ILE A 413 N GLU A 410 CISPEP 1 TRP A 473 PRO A 474 0 5.27 SITE 1 AC1 17 PHE A 436 GLU A 446 THR A 448 GLN A 467 SITE 2 AC1 17 HIS A 469 VAL A 472 ALA A 475 ARG A 478 SITE 3 AC1 17 ASN A 504 ILE A 523 VAL A 525 TYR A 553 SITE 4 AC1 17 VAL A 571 GLU A 575 TYR A 576 HOH A 702 SITE 5 AC1 17 HOH A 820 SITE 1 AC2 9 LEU A 383 ILE A 528 CYS A 529 GLN A 530 SITE 2 AC2 9 LYS A 550 ILE A 551 THR A 552 HOH A 701 SITE 3 AC2 9 HOH A 734 CRYST1 59.989 59.989 152.981 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006537 0.00000