HEADER FLAVOPROTEIN 04-JUN-18 5ZZY TITLE THE CRYSTAL STRUCTURE OF MANDELATE OXIDASE MUTANT Y128F WITH L-LACTATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXYMANDELATE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.3.46; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS ORIENTALIS; SOURCE 3 ORGANISM_COMMON: NOCARDIA ORIENTALIS; SOURCE 4 ORGANISM_TAXID: 31958; SOURCE 5 GENE: HMO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FMN-DEPENDENT OXIDASE, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.L.LI,K.H.LIN REVDAT 3 22-NOV-23 5ZZY 1 REMARK REVDAT 2 14-AUG-19 5ZZY 1 JRNL REVDAT 1 19-JUN-19 5ZZY 0 JRNL AUTH H.W.YEH,K.H.LIN,S.Y.LYU,Y.S.LI,C.M.HUANG,Y.L.WANG,H.W.SHIH, JRNL AUTH 2 N.S.HSU,C.J.WU,T.L.LI JRNL TITL BIOCHEMICAL AND STRUCTURAL EXPLORATIONS OF ALPHA-HYDROXYACID JRNL TITL 2 OXIDASES REVEAL A FOUR-ELECTRON OXIDATIVE DECARBOXYLATION JRNL TITL 3 REACTION. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 733 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 31373572 JRNL DOI 10.1107/S2059798319009574 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0218 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 78351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4117 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4076 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2486 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 341 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.936 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2639 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2554 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3606 ; 2.119 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5852 ; 0.959 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 352 ; 5.820 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;29.107 ;22.273 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 416 ;12.802 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;16.791 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 419 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3013 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 568 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1365 ; 1.736 ; 1.450 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1366 ; 1.736 ; 1.452 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1710 ; 2.548 ; 2.160 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1710 ; 2.547 ; 2.160 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1273 ; 3.509 ; 1.975 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1274 ; 3.509 ; 1.975 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1890 ; 5.360 ; 2.789 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3192 ; 6.921 ;20.119 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3083 ; 6.521 ;19.009 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZZY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1300007965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85441 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3SGZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% TASCIMATE, 0.1M BIS-TRIS PROPANE REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 68.89350 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 68.89350 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.96700 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 68.89350 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 68.89350 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 55.96700 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 68.89350 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 68.89350 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 55.96700 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 68.89350 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 68.89350 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 55.96700 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 68.89350 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 68.89350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 55.96700 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 68.89350 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 68.89350 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 55.96700 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 68.89350 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 68.89350 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 55.96700 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 68.89350 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 68.89350 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 55.96700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 183 REMARK 465 ALA A 184 REMARK 465 GLY A 185 REMARK 465 THR A 186 REMARK 465 ALA A 187 REMARK 465 ALA A 188 REMARK 465 HIS A 189 REMARK 465 ARG A 190 REMARK 465 ARG A 191 REMARK 465 THR A 192 REMARK 465 GLN A 193 REMARK 465 GLY A 194 REMARK 465 VAL A 195 REMARK 465 SER A 196 REMARK 465 ALA A 197 REMARK 465 VAL A 198 REMARK 465 ALA A 199 REMARK 465 ASP A 200 REMARK 465 HIS A 201 REMARK 465 THR A 202 REMARK 465 ALA A 203 REMARK 465 ARG A 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 683 O HOH A 813 2.04 REMARK 500 O HOH A 687 O HOH A 742 2.08 REMARK 500 O HOH A 567 O HOH A 810 2.11 REMARK 500 O HOH A 667 O HOH A 671 2.15 REMARK 500 O HOH A 704 O HOH A 780 2.15 REMARK 500 O HOH A 619 O HOH A 740 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 560 O HOH A 729 4555 1.98 REMARK 500 O HOH A 507 O HOH A 783 16444 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 234 CG GLU A 234 CD 0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 23 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 54 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 94 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 94 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP A 98 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 237 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 255 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 255 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 287 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 333 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 349 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 349 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 108 35.56 -93.95 REMARK 500 ARG A 122 73.82 -111.83 REMARK 500 GLN A 256 -104.80 -109.87 REMARK 500 ALA A 316 21.04 -152.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 838 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 839 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 840 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 841 DISTANCE = 6.56 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2OP A 402 DBREF 5ZZY A 1 357 UNP O52792 HMO_AMYOR 1 357 SEQADV 5ZZY MET A -19 UNP O52792 EXPRESSION TAG SEQADV 5ZZY GLY A -18 UNP O52792 EXPRESSION TAG SEQADV 5ZZY SER A -17 UNP O52792 EXPRESSION TAG SEQADV 5ZZY SER A -16 UNP O52792 EXPRESSION TAG SEQADV 5ZZY HIS A -15 UNP O52792 EXPRESSION TAG SEQADV 5ZZY HIS A -14 UNP O52792 EXPRESSION TAG SEQADV 5ZZY HIS A -13 UNP O52792 EXPRESSION TAG SEQADV 5ZZY HIS A -12 UNP O52792 EXPRESSION TAG SEQADV 5ZZY HIS A -11 UNP O52792 EXPRESSION TAG SEQADV 5ZZY HIS A -10 UNP O52792 EXPRESSION TAG SEQADV 5ZZY SER A -9 UNP O52792 EXPRESSION TAG SEQADV 5ZZY SER A -8 UNP O52792 EXPRESSION TAG SEQADV 5ZZY GLY A -7 UNP O52792 EXPRESSION TAG SEQADV 5ZZY LEU A -6 UNP O52792 EXPRESSION TAG SEQADV 5ZZY VAL A -5 UNP O52792 EXPRESSION TAG SEQADV 5ZZY PRO A -4 UNP O52792 EXPRESSION TAG SEQADV 5ZZY ARG A -3 UNP O52792 EXPRESSION TAG SEQADV 5ZZY GLY A -2 UNP O52792 EXPRESSION TAG SEQADV 5ZZY SER A -1 UNP O52792 EXPRESSION TAG SEQADV 5ZZY HIS A 0 UNP O52792 EXPRESSION TAG SEQADV 5ZZY PHE A 128 UNP O52792 TYR 128 ENGINEERED MUTATION SEQRES 1 A 377 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 377 LEU VAL PRO ARG GLY SER HIS MET THR TYR VAL SER LEU SEQRES 3 A 377 ALA ASP LEU GLU ARG ALA ALA ARG ASP VAL LEU PRO GLY SEQRES 4 A 377 GLU ILE PHE ASP PHE LEU ALA GLY GLY SER GLY THR GLU SEQRES 5 A 377 ALA SER LEU VAL ALA ASN ARG THR ALA LEU GLU ARG VAL SEQRES 6 A 377 PHE VAL ILE PRO ARG MET LEU ARG ASP LEU THR ASP VAL SEQRES 7 A 377 THR THR GLU ILE ASP ILE PHE GLY ARG ARG ALA ALA LEU SEQRES 8 A 377 PRO MET ALA VAL ALA PRO VAL ALA TYR GLN ARG LEU PHE SEQRES 9 A 377 HIS PRO GLU GLY GLU LEU ALA VAL ALA ARG ALA ALA ARG SEQRES 10 A 377 ASP ALA GLY VAL PRO TYR THR ILE CYS THR LEU SER SER SEQRES 11 A 377 VAL SER LEU GLU GLU ILE ALA ALA VAL GLY GLY ARG PRO SEQRES 12 A 377 TRP PHE GLN LEU PHE TRP LEU ARG ASP GLU LYS ARG SER SEQRES 13 A 377 LEU ASP LEU VAL ARG ARG ALA GLU ASP ALA GLY CYS GLU SEQRES 14 A 377 ALA ILE VAL PHE THR VAL ASP VAL PRO TRP MET GLY ARG SEQRES 15 A 377 ARG LEU ARG ASP MET ARG ASN GLY PHE ALA LEU PRO GLU SEQRES 16 A 377 TRP VAL THR ALA ALA ASN PHE ASP ALA GLY THR ALA ALA SEQRES 17 A 377 HIS ARG ARG THR GLN GLY VAL SER ALA VAL ALA ASP HIS SEQRES 18 A 377 THR ALA ARG GLU PHE ALA PRO ALA THR TRP GLU SER VAL SEQRES 19 A 377 GLU ALA VAL ARG ALA HIS THR ASP LEU PRO VAL VAL LEU SEQRES 20 A 377 LYS GLY ILE LEU ALA VAL GLU ASP ALA ARG ARG ALA VAL SEQRES 21 A 377 ASP ALA GLY ALA GLY GLY ILE VAL VAL SER ASN HIS GLY SEQRES 22 A 377 GLY ARG GLN LEU ASP GLY ALA VAL PRO GLY ILE GLU MET SEQRES 23 A 377 LEU GLY GLU ILE VAL ALA ALA VAL SER GLY GLY CYS GLU SEQRES 24 A 377 VAL LEU VAL ASP GLY GLY ILE ARG SER GLY GLY ASP VAL SEQRES 25 A 377 LEU LYS ALA THR ALA LEU GLY ALA SER ALA VAL LEU VAL SEQRES 26 A 377 GLY ARG PRO VAL MET TRP ALA LEU ALA ALA ALA GLY GLN SEQRES 27 A 377 ASP GLY VAL ARG GLN LEU LEU GLU LEU LEU ALA GLU GLU SEQRES 28 A 377 VAL ARG ASP ALA MET GLY LEU ALA GLY CYS GLU SER VAL SEQRES 29 A 377 GLY ALA ALA ARG ARG LEU ASN THR LYS LEU GLY VAL VAL HET FMN A 401 31 HET 2OP A 402 6 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM 2OP (2S)-2-HYDROXYPROPANOIC ACID HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 2OP C3 H6 O3 FORMUL 4 HOH *341(H2 O) HELIX 1 AA1 SER A 5 LEU A 17 1 13 HELIX 2 AA2 PRO A 18 GLY A 27 1 10 HELIX 3 AA3 GLU A 32 ARG A 44 1 13 HELIX 4 AA4 TYR A 80 PHE A 84 5 5 HELIX 5 AA5 GLU A 87 GLY A 100 1 14 HELIX 6 AA6 SER A 112 VAL A 119 1 8 HELIX 7 AA7 ASP A 132 ALA A 146 1 15 HELIX 8 AA8 ARG A 163 ASN A 169 1 7 HELIX 9 AA9 THR A 210 HIS A 220 1 11 HELIX 10 AB1 ALA A 232 ALA A 242 1 11 HELIX 11 AB2 ASN A 251 ARG A 255 5 5 HELIX 12 AB3 PRO A 262 SER A 275 1 14 HELIX 13 AB4 SER A 288 LEU A 298 1 11 HELIX 14 AB5 GLY A 306 ALA A 339 1 34 HELIX 15 AB6 SER A 343 ARG A 349 1 7 SHEET 1 AA1 2 VAL A 45 ILE A 48 0 SHEET 2 AA1 2 ASN A 351 LEU A 354 -1 O ASN A 351 N ILE A 48 SHEET 1 AA2 2 ILE A 62 ILE A 64 0 SHEET 2 AA2 2 ARG A 67 ALA A 69 -1 O ALA A 69 N ILE A 62 SHEET 1 AA3 9 MET A 73 VAL A 75 0 SHEET 2 AA3 9 TYR A 103 ILE A 105 1 O THR A 104 N VAL A 75 SHEET 3 AA3 9 PRO A 123 LEU A 127 1 O GLN A 126 N ILE A 105 SHEET 4 AA3 9 ILE A 151 THR A 154 1 O VAL A 152 N PHE A 125 SHEET 5 AA3 9 VAL A 225 ILE A 230 1 O VAL A 226 N ILE A 151 SHEET 6 AA3 9 GLY A 246 VAL A 249 1 O VAL A 248 N LEU A 227 SHEET 7 AA3 9 GLU A 279 VAL A 282 1 O LEU A 281 N VAL A 249 SHEET 8 AA3 9 ALA A 302 VAL A 305 1 O LEU A 304 N VAL A 282 SHEET 9 AA3 9 MET A 73 VAL A 75 1 N ALA A 74 O VAL A 305 SITE 1 AC1 21 LEU A 25 ALA A 76 PRO A 77 VAL A 78 SITE 2 AC1 21 ALA A 79 GLN A 126 PHE A 128 THR A 154 SITE 3 AC1 21 LYS A 228 HIS A 252 ARG A 255 ASP A 283 SITE 4 AC1 21 GLY A 284 GLY A 285 ARG A 287 GLY A 306 SITE 5 AC1 21 ARG A 307 2OP A 402 HOH A 561 HOH A 572 SITE 6 AC1 21 HOH A 632 SITE 1 AC2 4 ARG A 163 HIS A 252 ARG A 255 FMN A 401 CRYST1 137.787 137.787 111.934 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007258 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007258 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008934 0.00000