HEADER HYDROLASE 17-APR-15 5A0C TITLE CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL ELASTASE IN COMPLEX WITH A TITLE 2 DIHYDROPYRIMIDONE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTROPHIL ELASTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 30-247; COMPND 5 SYNONYM: BONE MARROW SERINE PROTEASE, ELASTASE-2, HUMAN LEUKOCYTE EL COMPND 6 ASTASE, HLE, MEDULLASIN, PMN ELASTASE, ELASTASE, HLE, MEDULIASIN, PMN COMPND 7 ELASTASE; COMPND 8 EC: 3.4.21.37 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS TRYPSIN FAMILY FOLD, PROTEASE, HYDROLASE, HYDROLASE- INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.VONNUSSBAUM,V.M.-J.LI,S.ALLERHEILIGEN,S.ANLAUF,L.BAERFACKER, AUTHOR 2 M.BECHEM,M.DELBECK,M.F.FITZGERALD,M.GERISCH,H.GIELEN-HAERTWIG, AUTHOR 3 H.HANING,D.KARTHAUS,D.LANG,K.LUSTIG,D.MEIBOM,J.MITTENDORF, AUTHOR 4 U.ROSENTRETER,M.SCHAEFER,S.SCHAEFER,J.SCHAMBERGER,L.A.TELAN, AUTHOR 5 A.TERSTEEGEN REVDAT 6 13-NOV-24 5A0C 1 HETSYN REVDAT 5 29-JUL-20 5A0C 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 23-JAN-19 5A0C 1 REMARK ATOM REVDAT 3 05-JUL-17 5A0C 1 REMARK REVDAT 2 22-MAR-17 5A0C 1 JRNL REVDAT 1 19-AUG-15 5A0C 0 JRNL AUTH F.VON NUSSBAUM,V.M.LI,S.ALLERHEILIGEN,S.ANLAUF,L.BARFACKER, JRNL AUTH 2 M.BECHEM,M.DELBECK,M.F.FITZGERALD,M.GERISCH, JRNL AUTH 3 H.GIELEN-HAERTWIG,H.HANING,D.KARTHAUS,D.LANG,K.LUSTIG, JRNL AUTH 4 D.MEIBOM,J.MITTENDORF,U.ROSENTRETER,M.SCHAFER,S.SCHAFER, JRNL AUTH 5 J.SCHAMBERGER,L.A.TELAN,A.TERSTEEGEN JRNL TITL FREEZING THE BIOACTIVE CONFORMATION TO BOOST POTENCY: THE JRNL TITL 2 IDENTIFICATION OF BAY 85-8501, A SELECTIVE AND POTENT JRNL TITL 3 INHIBITOR OF HUMAN NEUTROPHIL ELASTASE FOR PULMONARY JRNL TITL 4 DISEASES. JRNL REF CHEMMEDCHEM V. 10 1163 2015 JRNL REFN ESSN 1860-7187 JRNL PMID 26083237 JRNL DOI 10.1002/CMDC.201500131 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 30767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1641 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2193 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3272 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 242 REMARK 3 SOLVENT ATOMS : 334 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33000 REMARK 3 B22 (A**2) : -0.33000 REMARK 3 B33 (A**2) : 1.06000 REMARK 3 B12 (A**2) : -0.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.735 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3586 ; 0.027 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3470 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4879 ; 2.643 ; 2.021 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7751 ; 1.217 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 425 ; 7.128 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;34.706 ;22.297 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 510 ;15.831 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;14.930 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 576 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3969 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 857 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1733 ; 1.339 ; 1.573 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1732 ; 1.339 ; 1.572 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2147 ; 2.144 ; 2.348 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1853 ; 2.093 ; 1.948 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 1001 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6488 7.3342 15.6517 REMARK 3 T TENSOR REMARK 3 T11: 0.0610 T22: 0.0935 REMARK 3 T33: 0.0063 T12: -0.0275 REMARK 3 T13: -0.0119 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.3452 L22: 0.5597 REMARK 3 L33: 1.1665 L12: -0.1675 REMARK 3 L13: -0.0798 L23: -0.0492 REMARK 3 S TENSOR REMARK 3 S11: 0.0664 S12: 0.0634 S13: -0.0229 REMARK 3 S21: 0.0731 S22: -0.0136 S23: -0.0119 REMARK 3 S31: 0.0176 S32: 0.0097 S33: -0.0527 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 5A0C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-APR-15. REMARK 100 THE DEPOSITION ID IS D_1290063631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32441 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 38.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.950 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES AT PH6.5,1.2M SODIUMMALONATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.93333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.46667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 132 CD ARG B 132 NE 0.104 REMARK 500 GLY B 149 C ARG B 151 N 0.149 REMARK 500 ARG B 151 CD ARG B 151 NE -0.112 REMARK 500 LEU B 170 C CYS B 172 N 0.157 REMARK 500 ARG B 192 C GLN B 194 N 0.260 REMARK 500 ASN B 209 C GLY B 214 N 0.221 REMARK 500 ALA B 228 C SER B 230 N 0.168 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 MET A 53 CG - SD - CE ANGL. DEV. = -9.7 DEGREES REMARK 500 ARG A 132 CB - CG - CD ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 LEU A 215 CB - CG - CD1 ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG B 21 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 132 CB - CG - CD ANGL. DEV. = 15.8 DEGREES REMARK 500 ARG B 132 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 151 CG - CD - NE ANGL. DEV. = -16.8 DEGREES REMARK 500 ARG B 151 CD - NE - CZ ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG B 151 NE - CZ - NH1 ANGL. DEV. = -9.0 DEGREES REMARK 500 ARG B 151 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 153 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 153 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 181 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 192 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 LEU B 215 CB - CG - CD1 ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG B 224 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 75 -60.07 -133.50 REMARK 500 ASN A 119 -153.51 -152.73 REMARK 500 LEU A 232 -41.09 -135.61 REMARK 500 ASN B 61 -0.26 75.26 REMARK 500 HIS B 75 -60.03 -136.24 REMARK 500 ASN B 96 55.48 -146.07 REMARK 500 ASN B 119 -159.69 -152.13 REMARK 500 ARG B 151 119.14 -39.15 REMARK 500 LEU B 232 -39.86 -142.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 151 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG B 192 10.24 REMARK 500 ASN B 209 10.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2052 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A3005 DISTANCE = 8.10 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 XPE A 1003 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A09 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL ELASTASE IN COMPLEX WITH A REMARK 900 DIHYDROPYRIMIDONE INHIBITOR REMARK 900 RELATED ID: 5A0A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL ELASTASE IN COMPLEX WITH A REMARK 900 DIHYDROPYRIMIDONE INHIBITOR REMARK 900 RELATED ID: 5A0B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN NEUTROPHIL ELASTASE IN COMPLEX WITH A REMARK 900 DIHYDROPYRIMIDONE INHIBITOR DBREF 5A0C A 16 252 UNP P08246 ELNE_HUMAN 30 247 DBREF 5A0C B 16 252 UNP P08246 ELNE_HUMAN 30 247 SEQRES 1 A 218 ILE VAL GLY GLY ARG ARG ALA ARG PRO HIS ALA TRP PRO SEQRES 2 A 218 PHE MET VAL SER LEU GLN LEU ARG GLY GLY HIS PHE CYS SEQRES 3 A 218 GLY ALA THR LEU ILE ALA PRO ASN PHE VAL MET SER ALA SEQRES 4 A 218 ALA HIS CYS VAL ALA ASN VAL ASN VAL ARG ALA VAL ARG SEQRES 5 A 218 VAL VAL LEU GLY ALA HIS ASN LEU SER ARG ARG GLU PRO SEQRES 6 A 218 THR ARG GLN VAL PHE ALA VAL GLN ARG ILE PHE GLU ASN SEQRES 7 A 218 GLY TYR ASP PRO VAL ASN LEU LEU ASN ASP ILE VAL ILE SEQRES 8 A 218 LEU GLN LEU ASN GLY SER ALA THR ILE ASN ALA ASN VAL SEQRES 9 A 218 GLN VAL ALA GLN LEU PRO ALA GLN GLY ARG ARG LEU GLY SEQRES 10 A 218 ASN GLY VAL GLN CYS LEU ALA MET GLY TRP GLY LEU LEU SEQRES 11 A 218 GLY ARG ASN ARG GLY ILE ALA SER VAL LEU GLN GLU LEU SEQRES 12 A 218 ASN VAL THR VAL VAL THR SER LEU CYS ARG ARG SER ASN SEQRES 13 A 218 VAL CYS THR LEU VAL ARG GLY ARG GLN ALA GLY VAL CYS SEQRES 14 A 218 PHE GLY ASP SER GLY SER PRO LEU VAL CYS ASN GLY LEU SEQRES 15 A 218 ILE HIS GLY ILE ALA SER PHE VAL ARG GLY GLY CYS ALA SEQRES 16 A 218 SER GLY LEU TYR PRO ASP ALA PHE ALA PRO VAL ALA GLN SEQRES 17 A 218 PHE VAL ASN TRP ILE ASP SER ILE ILE GLN SEQRES 1 B 218 ILE VAL GLY GLY ARG ARG ALA ARG PRO HIS ALA TRP PRO SEQRES 2 B 218 PHE MET VAL SER LEU GLN LEU ARG GLY GLY HIS PHE CYS SEQRES 3 B 218 GLY ALA THR LEU ILE ALA PRO ASN PHE VAL MET SER ALA SEQRES 4 B 218 ALA HIS CYS VAL ALA ASN VAL ASN VAL ARG ALA VAL ARG SEQRES 5 B 218 VAL VAL LEU GLY ALA HIS ASN LEU SER ARG ARG GLU PRO SEQRES 6 B 218 THR ARG GLN VAL PHE ALA VAL GLN ARG ILE PHE GLU ASN SEQRES 7 B 218 GLY TYR ASP PRO VAL ASN LEU LEU ASN ASP ILE VAL ILE SEQRES 8 B 218 LEU GLN LEU ASN GLY SER ALA THR ILE ASN ALA ASN VAL SEQRES 9 B 218 GLN VAL ALA GLN LEU PRO ALA GLN GLY ARG ARG LEU GLY SEQRES 10 B 218 ASN GLY VAL GLN CYS LEU ALA MET GLY TRP GLY LEU LEU SEQRES 11 B 218 GLY ARG ASN ARG GLY ILE ALA SER VAL LEU GLN GLU LEU SEQRES 12 B 218 ASN VAL THR VAL VAL THR SER LEU CYS ARG ARG SER ASN SEQRES 13 B 218 VAL CYS THR LEU VAL ARG GLY ARG GLN ALA GLY VAL CYS SEQRES 14 B 218 PHE GLY ASP SER GLY SER PRO LEU VAL CYS ASN GLY LEU SEQRES 15 B 218 ILE HIS GLY ILE ALA SER PHE VAL ARG GLY GLY CYS ALA SEQRES 16 B 218 SER GLY LEU TYR PRO ASP ALA PHE ALA PRO VAL ALA GLN SEQRES 17 B 218 PHE VAL ASN TRP ILE ASP SER ILE ILE GLN MODRES 5A0C ASN A 113 ASN GLYCOSYLATION SITE MODRES 5A0C ASN A 163 ASN GLYCOSYLATION SITE MODRES 5A0C ASN B 113 ASN GLYCOSYLATION SITE MODRES 5A0C ASN B 163 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET FUC C 3 10 HET NAG D 1 14 HET FUC D 2 10 HET NAG E 1 14 HET NAG E 2 14 HET FUC E 3 10 HET NAG F 1 14 HET FUC F 2 10 HET JJV A1001 32 HET MES A1002 12 HET XPE A1003 30 HET JJV B1001 32 HET MES B1002 12 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM JJV (6S)-6-(4-CYANO-2-METHYLSULFONYL-PHENYL)-4-METHYL-2- HETNAM 2 JJV OXIDANYLIDENE-3-[3-(TRIFLUOROMETHYL)PHENYL]-1,6- HETNAM 3 JJV DIHYDROPYRIMIDINE-5-CARBONITRILE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM XPE 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN XPE DECAETHYLENE GLYCOL FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 3 FUC 4(C6 H12 O5) FORMUL 7 JJV 2(C21 H15 F3 N4 O3 S) FORMUL 8 MES 2(C6 H13 N O4 S) FORMUL 9 XPE C20 H42 O11 FORMUL 12 HOH *334(H2 O) HELIX 1 1 ALA A 55 ALA A 60 1 6 HELIX 2 2 ASN A 63 ALA A 66 5 4 HELIX 3 3 PHE A 243 GLN A 252 1 10 HELIX 4 4 ALA B 55 ALA B 60 1 6 HELIX 5 5 ASN B 63 ALA B 66 5 4 HELIX 6 6 PHE B 243 GLN B 252 1 10 SHEET 1 AA 8 ARG A 20 ARG A 21 0 SHEET 2 AA 8 GLN A 160 VAL A 167 -1 O GLU A 161 N ARG A 20 SHEET 3 AA 8 VAL A 185 LEU A 188 -1 O CYS A 186 N VAL A 167 SHEET 4 AA 8 ASP A 235 PRO A 239 -1 O ASP A 235 N THR A 187 SHEET 5 AA 8 LEU A 215 PHE A 222 -1 O ILE A 219 N ALA A 238 SHEET 6 AA 8 PRO A 205 CYS A 208 -1 O LEU A 206 N HIS A 217 SHEET 7 AA 8 GLN A 139 GLY A 144 -1 O LEU A 141 N VAL A 207 SHEET 8 AA 8 ARG A 20 ARG A 21 0 SHEET 1 AB 7 MET A 30 LEU A 35 0 SHEET 2 AB 7 GLY A 39 ALA A 48 -1 O GLY A 39 N LEU A 35 SHEET 3 AB 7 PHE A 51 SER A 54 -1 O PHE A 51 N ILE A 47 SHEET 4 AB 7 VAL A 108 LEU A 112 -1 O VAL A 108 N SER A 54 SHEET 5 AB 7 GLN A 85 GLU A 94 -1 N GLN A 90 O GLN A 111 SHEET 6 AB 7 ARG A 69 LEU A 72 -1 O VAL A 70 N PHE A 87 SHEET 7 AB 7 MET A 30 LEU A 35 -1 O SER A 32 N VAL A 71 SHEET 1 BA 8 ARG B 20 ARG B 21 0 SHEET 2 BA 8 GLN B 160 VAL B 167 -1 O GLU B 161 N ARG B 20 SHEET 3 BA 8 VAL B 185 LEU B 188 -1 O CYS B 186 N VAL B 167 SHEET 4 BA 8 ASP B 235 PRO B 239 -1 O ASP B 235 N THR B 187 SHEET 5 BA 8 LEU B 215 PHE B 222 -1 O ILE B 219 N ALA B 238 SHEET 6 BA 8 PRO B 205 CYS B 208 -1 O LEU B 206 N HIS B 217 SHEET 7 BA 8 GLN B 139 GLY B 144 -1 O LEU B 141 N VAL B 207 SHEET 8 BA 8 ARG B 20 ARG B 21 0 SHEET 1 BB 7 MET B 30 LEU B 35 0 SHEET 2 BB 7 GLY B 39 ALA B 48 -1 O GLY B 39 N LEU B 35 SHEET 3 BB 7 PHE B 51 SER B 54 -1 O PHE B 51 N ILE B 47 SHEET 4 BB 7 VAL B 108 LEU B 112 -1 O VAL B 108 N SER B 54 SHEET 5 BB 7 GLN B 85 GLU B 94 -1 N GLN B 90 O GLN B 111 SHEET 6 BB 7 ARG B 69 LEU B 72 -1 O VAL B 70 N PHE B 87 SHEET 7 BB 7 MET B 30 LEU B 35 -1 O SER B 32 N VAL B 71 SSBOND 1 CYS A 42 CYS A 58 1555 1555 2.10 SSBOND 2 CYS A 140 CYS A 208 1555 1555 2.06 SSBOND 3 CYS A 172 CYS A 186 1555 1555 2.05 SSBOND 4 CYS A 198 CYS A 227 1555 1555 2.07 SSBOND 5 CYS B 42 CYS B 58 1555 1555 2.07 SSBOND 6 CYS B 140 CYS B 208 1555 1555 2.02 SSBOND 7 CYS B 172 CYS B 186 1555 1555 2.04 SSBOND 8 CYS B 198 CYS B 227 1555 1555 2.09 LINK ND2 ASN A 113 C1 NAG D 1 1555 1555 1.46 LINK ND2 ASN A 163 C1 NAG C 1 1555 1555 1.40 LINK ND2 ASN B 113 C1 NAG F 1 1555 1555 1.47 LINK ND2 ASN B 163 C1 NAG E 1 1555 1555 1.41 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.41 LINK O6 NAG C 1 C1 FUC C 3 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 2 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O6 NAG E 1 C1 FUC E 3 1555 1555 1.46 LINK O6 NAG F 1 C1 FUC F 2 1555 1555 1.45 CRYST1 71.517 71.517 97.400 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013983 0.008073 0.000000 0.00000 SCALE2 0.000000 0.016146 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010267 0.00000