HEADER CELL ADHESION 21-APR-15 5A0L TITLE N-TERMINAL THIOESTER DOMAIN OF FIBRONECTIN-BINDING PROTEIN SFBI FROM TITLE 2 STREPTOCOCCUS PYOGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRONECTIN-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: THIOESTER DOMAIN, RESIDUES 63-270; COMPND 5 SYNONYM: FIBRONECTIN-BINDING PROTEIN SFBI; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: INTERNAL THIOESTER LINKAGE BETWEEN CYS109 AND GLN261 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 370553; SOURCE 4 STRAIN: MGAS2096; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPIN-F KEYWDS CELL ADHESION, SURFACE-ASSOCIATED PROTEIN, GRAM-POSITIVE, ADHESIN, KEYWDS 2 INTERNAL THIOESTER, THIOESTER DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR M.WALDEN,J.M.EDWARDS,A.M.DZIEWULSKA,S.-Y.KAN,U.SCHWARZ-LINEK, AUTHOR 2 M.J.BANFIELD REVDAT 5 08-MAY-24 5A0L 1 REMARK LINK REVDAT 4 30-OCT-19 5A0L 1 REMARK LINK REVDAT 3 22-MAR-17 5A0L 1 JRNL REVDAT 2 10-JUN-15 5A0L 1 JRNL REVDAT 1 03-JUN-15 5A0L 0 JRNL AUTH M.WALDEN,J.M.EDWARDS,A.M.DZIEWULSKA,R.BERGMANN,G.SAALBACH, JRNL AUTH 2 S.Y.KAN,O.K.MILLER,M.WECKENER,R.J.JACKSON,S.L.SHIRRAN, JRNL AUTH 3 C.H.BOTTING,G.J.FLORENCE,M.ROHDE,M.J.BANFIELD, JRNL AUTH 4 U.SCHWARZ-LINEK JRNL TITL AN INTERNAL THIOESTER IN A PATHOGEN SURFACE PROTEIN MEDIATES JRNL TITL 2 COVALENT HOST BINDING. JRNL REF ELIFE V. 4 2015 JRNL REFN ESSN 2050-084X JRNL PMID 26032562 JRNL DOI 10.7554/ELIFE.06638 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 119869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6244 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8679 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 509 REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 457 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.038 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.038 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.287 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3500 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3174 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4775 ; 1.528 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7310 ; 1.101 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 438 ; 5.713 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;38.936 ;24.719 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 567 ;11.067 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.070 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 496 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4118 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 858 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1685 ; 2.509 ; 2.083 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1682 ; 2.502 ; 2.081 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2114 ; 2.986 ; 3.138 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1815 ; 3.519 ; 2.348 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6674 ; 3.349 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 128 ;54.712 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6905 ;17.496 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 5A0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-APR-15. REMARK 100 THE DEPOSITION ID IS D_1290063648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 126127 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 52.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 0.75000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M ZINC ACETATE, 0.1 M HEPES PH REMARK 280 7.5, 14% PEG 8000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 82.56000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 82.56000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.26000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 82.56000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 10.63000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 82.56000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.89000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 82.56000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 82.56000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 21.26000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 82.56000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 31.89000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 82.56000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 10.63000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 61 REMARK 465 PRO A 62 REMARK 465 ASP A 63 REMARK 465 GLU A 64 REMARK 465 LYS A 65 REMARK 465 GLY B 61 REMARK 465 PRO B 62 REMARK 465 ASP B 63 REMARK 465 GLU B 64 REMARK 465 LYS B 65 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 103 CE NZ REMARK 470 LYS A 154 CE NZ REMARK 470 LYS A 168 NZ REMARK 470 GLN A 261 NE2 REMARK 470 LYS B 139 CE NZ REMARK 470 LEU B 148 CG CD1 CD2 REMARK 470 ASP B 149 CG OD1 OD2 REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 ASP B 202 OD1 OD2 REMARK 470 LYS B 205 CD CE NZ REMARK 470 GLU B 208 CD OE1 OE2 REMARK 470 ARG B 209 CD NE CZ NH1 NH2 REMARK 470 ARG B 212 CD NE CZ NH1 NH2 REMARK 470 GLU B 237 CD OE1 OE2 REMARK 470 GLN B 261 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 109 CD GLN B 261 1.73 REMARK 500 SG CYS A 109 CD GLN A 261 1.74 REMARK 500 O HOH A 2251 O HOH A 2265 1.90 REMARK 500 O HOH A 2282 O HOH A 2291 2.13 REMARK 500 O HOH A 2112 O HOH A 2153 2.14 REMARK 500 OD2 ASP A 76 O HOH A 2019 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 144 66.04 -153.31 REMARK 500 ASN B 144 66.37 -155.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1271 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 NE2 REMARK 620 2 HOH A2035 O 94.9 REMARK 620 3 HOH A2046 O 95.9 93.7 REMARK 620 4 HOH A2047 O 96.1 87.0 167.8 REMARK 620 5 HOH A2048 O 97.6 167.3 87.0 89.7 REMARK 620 6 HOH A2290 O 177.5 83.4 82.3 85.7 84.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1272 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 150 OE1 REMARK 620 2 ASP A 233 OD2 53.1 REMARK 620 3 HOH A2252 O 46.0 7.4 REMARK 620 4 HOH A2254 O 49.9 5.1 7.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1272 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 256 OE1 REMARK 620 2 GLU A 256 OE2 52.6 REMARK 620 3 GLU B 258 OE2 37.1 88.9 REMARK 620 4 ACT B1273 OXT 37.1 88.7 1.2 REMARK 620 5 ACT B1274 OXT 35.7 87.8 2.0 2.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1273 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 258 OE1 REMARK 620 2 GLU A 258 OE2 53.7 REMARK 620 3 HOH A2282 O 88.5 121.6 REMARK 620 4 ASP B 74 OD2 85.5 76.1 56.1 REMARK 620 5 GLU B 256 OE2 82.1 72.9 57.7 3.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1271 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 93 NE2 REMARK 620 2 HOH B2024 O 62.2 REMARK 620 3 HOH B2025 O 99.1 72.5 REMARK 620 4 HOH B2035 O 94.8 58.2 113.5 REMARK 620 5 HOH B2036 O 96.9 128.0 158.6 79.0 REMARK 620 6 HOH B2037 O 100.8 142.7 78.5 158.7 84.7 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1274 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A0D RELATED DB: PDB REMARK 900 N-TERMINAL THIOESTER DOMAIN OF SURFACE PROTEIN FROM CLOSTRIDIUM REMARK 900 PERFRINGENS, CYS138ALA MUTANT REMARK 900 RELATED ID: 5A0G RELATED DB: PDB REMARK 900 N-TERMINAL THIOESTER DOMAIN OF SURFACE PROTEIN FROM CLOSTRIDIUM REMARK 900 PERFRINGENS REMARK 900 RELATED ID: 5A0N RELATED DB: PDB REMARK 900 N-TERMINAL THIOESTER DOMAIN OF PROTEIN F2 LIKE FIBRONECTIN-BINDING REMARK 900 PROTEIN FROM STREPTOCOCCUS PNEUMONIAE DBREF 5A0L A 63 270 UNP Q1JDZ6 Q1JDZ6_STRPB 63 270 DBREF 5A0L B 63 270 UNP Q1JDZ6 Q1JDZ6_STRPB 63 270 SEQADV 5A0L GLY A 61 UNP Q1JDZ6 EXPRESSION TAG SEQADV 5A0L PRO A 62 UNP Q1JDZ6 EXPRESSION TAG SEQADV 5A0L GLY B 61 UNP Q1JDZ6 EXPRESSION TAG SEQADV 5A0L PRO B 62 UNP Q1JDZ6 EXPRESSION TAG SEQRES 1 A 210 GLY PRO ASP GLU LYS THR VAL PRO ASN PHE LYS SER PRO SEQRES 2 A 210 ASP PRO ASP TYR PRO TRP TYR GLY TYR ASP SER TYR ARG SEQRES 3 A 210 GLY ILE PHE ALA ARG TYR HIS ASN LEU LYS VAL ASN LEU SEQRES 4 A 210 LYS GLY SER LYS GLU TYR GLN ALA TYR CYS PHE ASN LEU SEQRES 5 A 210 THR LYS TYR PHE PRO ARG PRO THR TYR SER THR THR ASN SEQRES 6 A 210 ASN PHE TYR LYS LYS ILE ASP GLY SER GLY SER ALA PHE SEQRES 7 A 210 LYS SER TYR ALA ALA ASN PRO ARG VAL LEU ASP GLU ASN SEQRES 8 A 210 LEU ASP LYS LEU GLU LYS ASN ILE LEU ASN VAL ILE TYR SEQRES 9 A 210 ASN GLY TYR LYS SER ASN ALA ASN GLY PHE MET ASN GLY SEQRES 10 A 210 ILE GLU ASP LEU ASN ALA ILE LEU VAL THR GLN ASN ALA SEQRES 11 A 210 ILE TRP TYR TYR SER ASP SER ALA PRO LEU ASN ASP VAL SEQRES 12 A 210 ASN LYS MET TRP GLU ARG GLU VAL ARG ASN GLY GLU ILE SEQRES 13 A 210 SER GLU SER GLN VAL THR LEU MET ARG GLU ALA LEU LYS SEQRES 14 A 210 LYS LEU ILE ASP PRO ASN LEU GLU ALA THR ALA ALA ASN SEQRES 15 A 210 LYS ILE PRO SER GLY TYR ARG LEU ASN ILE PHE LYS SER SEQRES 16 A 210 GLU ASN GLU ASP TYR GLN ASN LEU LEU SER ALA GLU TYR SEQRES 17 A 210 VAL PRO SEQRES 1 B 210 GLY PRO ASP GLU LYS THR VAL PRO ASN PHE LYS SER PRO SEQRES 2 B 210 ASP PRO ASP TYR PRO TRP TYR GLY TYR ASP SER TYR ARG SEQRES 3 B 210 GLY ILE PHE ALA ARG TYR HIS ASN LEU LYS VAL ASN LEU SEQRES 4 B 210 LYS GLY SER LYS GLU TYR GLN ALA TYR CYS PHE ASN LEU SEQRES 5 B 210 THR LYS TYR PHE PRO ARG PRO THR TYR SER THR THR ASN SEQRES 6 B 210 ASN PHE TYR LYS LYS ILE ASP GLY SER GLY SER ALA PHE SEQRES 7 B 210 LYS SER TYR ALA ALA ASN PRO ARG VAL LEU ASP GLU ASN SEQRES 8 B 210 LEU ASP LYS LEU GLU LYS ASN ILE LEU ASN VAL ILE TYR SEQRES 9 B 210 ASN GLY TYR LYS SER ASN ALA ASN GLY PHE MET ASN GLY SEQRES 10 B 210 ILE GLU ASP LEU ASN ALA ILE LEU VAL THR GLN ASN ALA SEQRES 11 B 210 ILE TRP TYR TYR SER ASP SER ALA PRO LEU ASN ASP VAL SEQRES 12 B 210 ASN LYS MET TRP GLU ARG GLU VAL ARG ASN GLY GLU ILE SEQRES 13 B 210 SER GLU SER GLN VAL THR LEU MET ARG GLU ALA LEU LYS SEQRES 14 B 210 LYS LEU ILE ASP PRO ASN LEU GLU ALA THR ALA ALA ASN SEQRES 15 B 210 LYS ILE PRO SER GLY TYR ARG LEU ASN ILE PHE LYS SER SEQRES 16 B 210 GLU ASN GLU ASP TYR GLN ASN LEU LEU SER ALA GLU TYR SEQRES 17 B 210 VAL PRO HET ZN A1271 1 HET ZN A1272 1 HET ZN A1273 1 HET ZN B1271 1 HET ZN B1272 1 HET ACT B1273 4 HET ACT B1274 4 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 3 ZN 5(ZN 2+) FORMUL 8 ACT 2(C2 H3 O2 1-) FORMUL 10 HOH *457(H2 O) HELIX 1 1 SER A 134 ALA A 142 1 9 HELIX 2 2 ASN A 151 GLY A 166 1 16 HELIX 3 3 GLU A 179 ASP A 196 1 18 HELIX 4 4 ASP A 202 MET A 206 5 5 HELIX 5 5 TRP A 207 ASN A 213 1 7 HELIX 6 6 SER A 217 ASP A 233 1 17 HELIX 7 7 ASN A 235 ALA A 240 1 6 HELIX 8 8 SER B 134 ALA B 142 1 9 HELIX 9 9 ASN B 151 GLY B 166 1 16 HELIX 10 10 GLU B 179 ASP B 196 1 18 HELIX 11 11 ASP B 202 MET B 206 5 5 HELIX 12 12 TRP B 207 ASN B 213 1 7 HELIX 13 13 SER B 217 ASP B 233 1 17 HELIX 14 14 ASN B 235 ALA B 240 1 6 SHEET 1 AA 7 TRP A 79 ASP A 83 0 SHEET 2 AA 7 ASN A 126 ASP A 132 -1 O ASN A 126 N GLY A 81 SHEET 3 AA 7 ASN A 251 SER A 255 -1 O ILE A 252 N ILE A 131 SHEET 4 AA 7 LEU A 263 SER A 265 -1 O LEU A 263 N PHE A 253 SHEET 5 AA 7 TYR A 105 CYS A 109 -1 O TYR A 108 N LEU A 264 SHEET 6 AA 7 LEU A 95 LEU A 99 -1 O LEU A 95 N ALA A 107 SHEET 7 AA 7 TRP A 79 ASP A 83 -1 O TYR A 80 N ASN A 98 SHEET 1 BA 7 TRP B 79 ASP B 83 0 SHEET 2 BA 7 ASN B 126 ASP B 132 -1 O ASN B 126 N GLY B 81 SHEET 3 BA 7 ASN B 251 SER B 255 -1 O ILE B 252 N ILE B 131 SHEET 4 BA 7 LEU B 263 SER B 265 -1 O LEU B 263 N PHE B 253 SHEET 5 BA 7 TYR B 105 CYS B 109 -1 O TYR B 108 N LEU B 264 SHEET 6 BA 7 LEU B 95 LEU B 99 -1 O LEU B 95 N ALA B 107 SHEET 7 BA 7 TRP B 79 ASP B 83 -1 O TYR B 80 N ASN B 98 LINK NE2AHIS A 93 ZN ZN A1271 1555 1555 2.19 LINK OE1 GLU A 150 ZN ZN A1272 1555 3655 2.04 LINK OD2 ASP A 233 ZN ZN A1272 1555 1555 1.98 LINK OE1 GLU A 256 ZN ZN B1272 1555 3655 2.14 LINK OE2 GLU A 256 ZN ZN B1272 1555 3655 2.69 LINK OE1 GLU A 258 ZN ZN A1273 1555 1555 2.69 LINK OE2 GLU A 258 ZN ZN A1273 1555 1555 1.94 LINK ZN ZN A1271 O HOH A2035 1555 1555 2.19 LINK ZN ZN A1271 O HOH A2046 1555 1555 2.09 LINK ZN ZN A1271 O HOH A2047 1555 1555 2.11 LINK ZN ZN A1271 O HOH A2048 1555 1555 2.08 LINK ZN ZN A1271 O HOH A2290 1555 1555 2.17 LINK ZN ZN A1272 O HOH A2252 1555 1555 2.22 LINK ZN ZN A1272 O HOH A2254 1555 1555 1.99 LINK ZN ZN A1273 O HOH A2282 1555 1555 1.96 LINK ZN ZN A1273 OD2 ASP B 74 4464 1555 2.00 LINK ZN ZN A1273 OE2 GLU B 256 4464 1555 1.93 LINK NE2AHIS B 93 ZN ZN B1271 1555 1555 2.40 LINK OE2 GLU B 258 ZN ZN B1272 1555 1555 1.93 LINK ZN ZN B1271 O HOH B2024 1555 1555 2.68 LINK ZN ZN B1271 O HOH B2025 1555 1555 1.75 LINK ZN ZN B1271 O HOH B2035 1555 1555 1.97 LINK ZN ZN B1271 O HOH B2036 1555 1555 2.22 LINK ZN ZN B1271 O HOH B2037 1555 1555 1.90 LINK ZN ZN B1272 OXT ACT B1273 1555 1555 2.21 LINK ZN ZN B1272 OXT ACT B1274 1555 1555 1.88 CISPEP 1 TYR A 167 LYS A 168 0 9.14 CISPEP 2 TYR B 167 LYS B 168 0 4.50 SITE 1 AC1 7 HIS A 93 HOH A2035 HOH A2045 HOH A2046 SITE 2 AC1 7 HOH A2047 HOH A2048 HOH A2290 SITE 1 AC2 4 GLU A 150 ASP A 233 HOH A2252 HOH A2254 SITE 1 AC3 5 GLU A 258 HOH A2282 HOH A2291 ASP B 74 SITE 2 AC3 5 GLU B 256 SITE 1 AC4 6 HIS B 93 HOH B2024 HOH B2025 HOH B2035 SITE 2 AC4 6 HOH B2036 HOH B2037 SITE 1 AC5 4 GLU A 256 GLU B 258 ACT B1273 ACT B1274 SITE 1 AC6 8 ASN A 125 GLU A 256 ASN A 257 HOH A2115 SITE 2 AC6 8 GLU B 258 ZN B1272 ACT B1274 HOH B2166 SITE 1 AC7 9 GLU A 256 SER B 140 LYS B 254 GLU B 258 SITE 2 AC7 9 ZN B1272 ACT B1273 HOH B2065 HOH B2093 SITE 3 AC7 9 HOH B2166 CRYST1 165.120 165.120 42.520 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006056 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006056 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023518 0.00000