HEADER DE NOVO PROTEIN 21-APR-15 5A0O TITLE ADHIRON RAISED AGAINST P300 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADHIRON; COMPND 3 CHAIN: B, S; COMPND 4 FRAGMENT: ADHIRON; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11; SOURCE 10 OTHER_DETAILS: DESIGNED NON-ANTIBODY BINDING PROTEIN KEYWDS DE NOVO PROTEIN, AFFIMER EXPDTA X-RAY DIFFRACTION AUTHOR H.F.KYLE,K.F.WICKSON,J.STOTT,G.M.BURSLEM,A.L.BREEZE,C.TIEDE, AUTHOR 2 D.C.TOMLINSON,S.L.WARRINER,A.NELSON,A.J.WILSON,T.A.EDWARDS REVDAT 3 10-JAN-24 5A0O 1 REMARK REVDAT 2 30-SEP-15 5A0O 1 JRNL REVDAT 1 15-JUL-15 5A0O 0 JRNL AUTH H.F.KYLE,K.F.WICKSON,J.STOTT,G.M.BURSLEM,A.L.BREEZE,C.TIEDE, JRNL AUTH 2 D.C.TOMLINSON,S.L.WARRINER,A.NELSON,A.J.WILSON,T.A.EDWARDS JRNL TITL EXPLORATION OF THE HIF-1ALPHA.P300 INTERFACE USING PEPTIDE JRNL TITL 2 AND ADHIRON PHAGE DISPLAY TECHNOLOGIES JRNL REF MOL.BIOSYST. V. 11 2738 2015 JRNL REFN ISSN 1742-206X JRNL PMID 26135796 JRNL DOI 10.1039/C5MB00284B REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 7134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 373 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 513 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4550 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1526 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.49000 REMARK 3 B22 (A**2) : 2.08000 REMARK 3 B33 (A**2) : -4.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.910 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.363 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.294 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.875 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1558 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1532 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2095 ; 1.725 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3544 ; 0.857 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 184 ; 8.097 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;40.221 ;25.278 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 302 ;21.092 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;20.817 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 228 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1702 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 338 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 742 ; 1.298 ; 7.061 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 741 ; 1.299 ; 7.057 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 924 ; 2.399 ;10.576 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 813 ; 0.863 ; 7.082 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 5A0O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-APR-15. REMARK 100 THE DEPOSITION ID IS D_1290063654. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7134 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.730 REMARK 200 RESOLUTION RANGE LOW (A) : 36.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : 1.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 4N6U REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M DI-SODIUM SUCCINATE PH7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.64500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.96500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.32000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.96500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.64500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.32000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.64500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.32000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.96500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.32000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.64500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.96500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2008 LIES ON A SPECIAL POSITION. REMARK 375 HOH S2011 LIES ON A SPECIAL POSITION. REMARK 375 HOH S2012 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ASP B 95 REMARK 465 ALA B 96 REMARK 465 ALA B 97 REMARK 465 ALA B 98 REMARK 465 ALA B 99 REMARK 465 HIS B 100 REMARK 465 HIS B 101 REMARK 465 HIS B 102 REMARK 465 HIS B 103 REMARK 465 HIS B 104 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 465 HIS B 107 REMARK 465 MET S 1 REMARK 465 ASP S 95 REMARK 465 ALA S 96 REMARK 465 ALA S 97 REMARK 465 ALA S 98 REMARK 465 ALA S 99 REMARK 465 HIS S 100 REMARK 465 HIS S 101 REMARK 465 HIS S 102 REMARK 465 HIS S 103 REMARK 465 HIS S 104 REMARK 465 HIS S 105 REMARK 465 HIS S 106 REMARK 465 HIS S 107 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN S 4 H GLU S 7 1.09 REMARK 500 O TYR B 77 H LYS B 80 1.51 REMARK 500 O VAL B 16 H HIS B 19 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2019 O HOH B 2019 6665 1.15 REMARK 500 OE2 GLU S 10 HH22 ARG S 13 6565 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO S 79 C - N - CA ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 4 -139.15 69.79 REMARK 500 SER B 5 -84.89 69.14 REMARK 500 LEU B 6 -6.84 -158.03 REMARK 500 LYS B 21 -73.88 -91.86 REMARK 500 ASN B 24 72.94 40.20 REMARK 500 ALA B 25 -169.16 -119.39 REMARK 500 VAL B 30 -75.52 -79.56 REMARK 500 LEU B 43 53.24 30.74 REMARK 500 ASP B 59 85.28 -64.78 REMARK 500 MET B 76 -77.56 -82.24 REMARK 500 PRO B 79 54.23 -102.03 REMARK 500 LYS B 80 153.23 126.67 REMARK 500 GLN B 88 47.37 -143.75 REMARK 500 GLU B 89 125.75 148.59 REMARK 500 PHE B 90 88.92 -151.16 REMARK 500 VAL B 93 -54.09 -126.22 REMARK 500 VAL S 30 -56.22 -122.74 REMARK 500 ILE S 47 -62.39 -106.57 REMARK 500 MET S 76 -69.03 -98.77 REMARK 500 TYR S 78 -76.80 -63.06 REMARK 500 PRO S 79 53.60 -97.30 REMARK 500 LYS S 80 148.91 89.11 REMARK 500 GLU S 89 111.70 76.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR S 54 LEU S 55 -143.90 REMARK 500 REMARK 500 REMARK: NULL DBREF 5A0O B 1 107 PDB 5A0O 5A0O 1 107 DBREF 5A0O S 1 107 PDB 5A0O 5A0O 1 107 SEQRES 1 B 107 MET ALA SER ASN SER LEU GLU ILE GLU GLU LEU ALA ARG SEQRES 2 B 107 PHE ALA VAL ASP GLU HIS ASN LYS LYS GLU ASN ALA LEU SEQRES 3 B 107 LEU GLU PHE VAL ARG VAL VAL LYS ALA LYS GLU GLN ALA SEQRES 4 B 107 ASN LEU TYR LEU SER THR PRO ILE ASP THR MET TYR TYR SEQRES 5 B 107 LEU THR LEU GLU ALA LYS ASP GLY GLY LYS LYS LYS LEU SEQRES 6 B 107 TYR GLU ALA LYS VAL TRP VAL LYS HIS ILE MET TYR TYR SEQRES 7 B 107 PRO LYS THR ALA ASN PHE LYS GLU LEU GLN GLU PHE LYS SEQRES 8 B 107 PRO VAL GLY ASP ALA ALA ALA ALA HIS HIS HIS HIS HIS SEQRES 9 B 107 HIS HIS HIS SEQRES 1 S 107 MET ALA SER ASN SER LEU GLU ILE GLU GLU LEU ALA ARG SEQRES 2 S 107 PHE ALA VAL ASP GLU HIS ASN LYS LYS GLU ASN ALA LEU SEQRES 3 S 107 LEU GLU PHE VAL ARG VAL VAL LYS ALA LYS GLU GLN ALA SEQRES 4 S 107 ASN LEU TYR LEU SER THR PRO ILE ASP THR MET TYR TYR SEQRES 5 S 107 LEU THR LEU GLU ALA LYS ASP GLY GLY LYS LYS LYS LEU SEQRES 6 S 107 TYR GLU ALA LYS VAL TRP VAL LYS HIS ILE MET TYR TYR SEQRES 7 S 107 PRO LYS THR ALA ASN PHE LYS GLU LEU GLN GLU PHE LYS SEQRES 8 S 107 PRO VAL GLY ASP ALA ALA ALA ALA HIS HIS HIS HIS HIS SEQRES 9 S 107 HIS HIS HIS FORMUL 3 HOH *48(H2 O) HELIX 1 1 LEU B 6 GLU B 23 1 18 HELIX 2 2 ASN S 4 ASN S 24 1 21 SHEET 1 BA 4 GLU B 28 TYR B 42 0 SHEET 2 BA 4 THR B 45 ASP B 59 -1 O THR B 45 N TYR B 42 SHEET 3 BA 4 LYS B 62 ILE B 75 -1 O LYS B 62 N ASP B 59 SHEET 4 BA 4 ALA B 82 PRO B 92 -1 O ALA B 82 N ILE B 75 SHEET 1 SA 4 GLU S 28 TYR S 42 0 SHEET 2 SA 4 THR S 45 ASP S 59 -1 O THR S 45 N TYR S 42 SHEET 3 SA 4 LYS S 62 ILE S 75 -1 O LYS S 62 N ASP S 59 SHEET 4 SA 4 ALA S 82 PRO S 92 -1 O ALA S 82 N ILE S 75 CISPEP 1 TYR B 78 PRO B 79 0 -13.77 CRYST1 69.290 72.640 107.930 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014432 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009265 0.00000