HEADER OXIDOREDUCTASE 05-MAY-15 5A1T TITLE TRICHOMONAS VAGINALIS LACTATE DEHYDROGENASE IN COMPLEX WITH NADH AND TITLE 2 OXAMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-LACTATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.27; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS; SOURCE 3 ORGANISM_TAXID: 5722; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, LACTATE DEHYDROGENASE EXPDTA X-RAY DIFFRACTION AUTHOR P.A.STEINDEL,E.H.CHEN,D.L.THEOBALD REVDAT 4 10-JAN-24 5A1T 1 REMARK REVDAT 3 23-OCT-19 5A1T 1 ATOM REVDAT 2 06-JUL-16 5A1T 1 JRNL REVDAT 1 02-MAR-16 5A1T 0 JRNL AUTH P.A.STEINDEL,E.H.CHEN,J.D.WIRTH,D.L.THEOBALD JRNL TITL GRADUAL NEOFUNCTIONALIZATION IN THE CONVERGENT EVOLUTION OF JRNL TITL 2 TRICHOMONAD LACTATE AND MALATE DEHYDROGENASES. JRNL REF PROTEIN SCI. V. 25 1319 2016 JRNL REFN ISSN 0961-8368 JRNL PMID 26889885 JRNL DOI 10.1002/PRO.2904 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.5 REMARK 3 NUMBER OF REFLECTIONS : 38882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0117 - 4.7466 1.00 3922 208 0.1838 0.2238 REMARK 3 2 4.7466 - 3.7680 0.86 3231 177 0.1654 0.1899 REMARK 3 3 3.7680 - 3.2919 0.63 2332 117 0.1875 0.2618 REMARK 3 4 3.2919 - 2.9909 1.00 3686 199 0.2011 0.2622 REMARK 3 5 2.9909 - 2.7766 0.99 3665 183 0.2157 0.2659 REMARK 3 6 2.7766 - 2.6129 0.51 1889 99 0.2236 0.2431 REMARK 3 7 2.6129 - 2.4820 0.99 3618 191 0.2208 0.2701 REMARK 3 8 2.4820 - 2.3740 0.99 3625 194 0.2073 0.2892 REMARK 3 9 2.3740 - 2.2826 0.98 3556 190 0.2072 0.2376 REMARK 3 10 2.2826 - 2.2039 0.11 388 18 0.2203 0.2613 REMARK 3 11 2.2039 - 2.1349 0.91 3300 177 0.2248 0.2780 REMARK 3 12 2.1349 - 2.0739 0.54 1465 69 0.2498 0.3904 REMARK 3 13 2.0739 - 2.0193 0.18 284 18 0.5908 0.8286 REMARK 3 14 2.0193 - 1.9700 0.54 1986 95 0.3032 0.3849 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5429 REMARK 3 ANGLE : 0.812 7395 REMARK 3 CHIRALITY : 0.030 819 REMARK 3 PLANARITY : 0.003 936 REMARK 3 DIHEDRAL : 12.096 1953 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5A1T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1290063694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OXFORD ENHANCE ULTRA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39768 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 47.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.310 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 73.1 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.02000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 54.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 1.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4UUL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 0.1 M SODIUM CITRATE TRIBASIC DIHYDRATE PH 5.6, REMARK 280 2.0 M AMMONIUM SULFATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.34000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.12500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.34000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.12500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2010 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2010 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2023 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 ALA B 332 REMARK 465 GLN B 333 REMARK 465 LEU B 334 REMARK 465 GLU B 335 REMARK 465 HIS B 336 REMARK 465 HIS B 337 REMARK 465 HIS B 338 REMARK 465 HIS B 339 REMARK 465 HIS B 340 REMARK 465 HIS B 341 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H VAL A 284 O HOH A 2188 1.53 REMARK 500 HZ1 LYS A 74 O HOH A 2093 1.57 REMARK 500 H GLU A 273 O HOH A 2325 1.60 REMARK 500 O HOH B 2042 O HOH B 2088 1.85 REMARK 500 O HOH A 2141 O HOH A 2328 1.95 REMARK 500 O HOH A 2228 O HOH A 2229 1.96 REMARK 500 O HOH B 2044 O HOH B 2254 1.96 REMARK 500 O HOH B 2056 O HOH B 2136 1.98 REMARK 500 O GLY A 237 O HOH A 2300 2.04 REMARK 500 O HOH B 2105 O HOH B 2117 2.04 REMARK 500 O HOH A 2070 O HOH A 2071 2.04 REMARK 500 O HOH A 2206 O HOH A 2207 2.05 REMARK 500 O HOH B 2121 O HOH B 2241 2.05 REMARK 500 O HOH A 2037 O HOH A 2169 2.07 REMARK 500 O HOH B 2048 O HOH B 2119 2.07 REMARK 500 O HOH A 2231 O HOH A 2233 2.08 REMARK 500 O HOH B 2077 O HOH B 2173 2.09 REMARK 500 OD2 ASP B 231 O HOH B 2193 2.11 REMARK 500 O HOH B 2186 O HOH B 2189 2.11 REMARK 500 O PRO A 270 O HOH A 2322 2.12 REMARK 500 OE1 GLN B 95 O HOH B 2090 2.13 REMARK 500 O HOH A 2119 O HOH A 2321 2.13 REMARK 500 O HOH A 2342 O HOH A 2343 2.14 REMARK 500 O LYS A 144 O HOH A 2197 2.16 REMARK 500 OD2 ASP B 179 O HOH B 2161 2.17 REMARK 500 O HOH B 2152 O HOH B 2187 2.18 REMARK 500 OG1 THR A 198 O HOH A 2237 2.18 REMARK 500 OD2 ASP B 179 O HOH B 2162 2.19 REMARK 500 O HOH A 2022 O HOH A 2023 2.19 REMARK 500 OD1 ASN A 47 O HOH A 2054 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2123 O HOH B 2033 2555 1.87 REMARK 500 O HOH A 2080 O HOH A 2214 2555 2.10 REMARK 500 OE1 GLU B 301 O HOH A 2395 3544 2.12 REMARK 500 O HOH A 2077 O HOH A 2377 3544 2.16 REMARK 500 O HOH A 2039 O HOH A 2223 2555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 219 -67.12 -126.62 REMARK 500 ALA A 241 -54.82 -149.53 REMARK 500 GLU B 202 72.52 40.37 REMARK 500 ASP B 219 -74.83 -164.79 REMARK 500 ALA B 241 -52.98 -151.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2023 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A2042 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A2076 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A2090 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A2091 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A2143 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A2160 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A2178 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A2400 DISTANCE = 8.45 ANGSTROMS REMARK 525 HOH A2402 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A2403 DISTANCE = 8.43 ANGSTROMS REMARK 525 HOH B2022 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B2075 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B2089 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B2245 DISTANCE = 9.24 ANGSTROMS REMARK 525 HOH B2247 DISTANCE = 8.57 ANGSTROMS REMARK 525 HOH B2251 DISTANCE = 7.92 ANGSTROMS REMARK 525 HOH B2253 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH B2256 DISTANCE = 9.60 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXM A 346 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI B 345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXM B 346 DBREF 5A1T A 1 341 UNP O96445 O96445_TRIVA 1 341 DBREF 5A1T B 1 341 UNP O96445 O96445_TRIVA 1 341 SEQRES 1 A 341 MET SER GLU ALA ALA HIS VAL LEU ILE THR GLY ALA ALA SEQRES 2 A 341 GLY GLN ILE GLY TYR ILE LEU SER HIS TRP ILE ALA SER SEQRES 3 A 341 GLY GLU LEU TYR GLY ASP ARG GLN VAL TYR LEU HIS LEU SEQRES 4 A 341 LEU ASP ILE PRO PRO ALA MET ASN ARG LEU THR ALA LEU SEQRES 5 A 341 THR MET GLU LEU GLU ASP CYS ALA PHE PRO HIS LEU ALA SEQRES 6 A 341 GLY PHE VAL ALA THR THR ASP PRO LYS ALA ALA PHE LYS SEQRES 7 A 341 ASP ILE ASP CYS ALA PHE LEU VAL ALA SER MET PRO LEU SEQRES 8 A 341 LYS PRO GLY GLN VAL ARG ALA ASP LEU ILE SER SER ASN SEQRES 9 A 341 SER VAL ILE PHE LYS ASN THR GLY GLU TYR LEU SER LYS SEQRES 10 A 341 TRP ALA LYS PRO SER VAL LYS VAL LEU VAL ILE GLY ASN SEQRES 11 A 341 PRO ASP ASN THR ASN CYS GLU ILE ALA MET LEU HIS ALA SEQRES 12 A 341 LYS ASN LEU LYS PRO GLU ASN PHE SER SER LEU SER MET SEQRES 13 A 341 LEU ASP GLN ASN ARG ALA TYR TYR GLU VAL ALA SER LYS SEQRES 14 A 341 LEU GLY VAL ASP VAL LYS ASP VAL HIS ASP ILE ILE VAL SEQRES 15 A 341 TRP GLY ASN HIS GLY GLU SER MET VAL ALA ASP LEU THR SEQRES 16 A 341 GLN ALA THR PHE THR LYS GLU GLY LYS THR GLN LYS VAL SEQRES 17 A 341 VAL ASP VAL LEU ASP HIS ASP TYR VAL PHE ASP THR PHE SEQRES 18 A 341 PHE LYS LYS ILE GLY HIS ARG ALA TRP ASP ILE LEU GLU SEQRES 19 A 341 HIS ARG GLY PHE THR SER ALA ALA SER PRO THR LYS ALA SEQRES 20 A 341 ALA ILE GLN HIS MET LYS ALA TRP LEU PHE GLY THR ALA SEQRES 21 A 341 PRO GLY GLU VAL LEU SER MET GLY ILE PRO VAL PRO GLU SEQRES 22 A 341 GLY ASN PRO TYR GLY ILE LYS PRO GLY VAL VAL PHE SER SEQRES 23 A 341 PHE PRO CYS ASN VAL ASP LYS GLU GLY LYS ILE HIS VAL SEQRES 24 A 341 VAL GLU GLY PHE LYS VAL ASN ASP TRP LEU ARG GLU LYS SEQRES 25 A 341 LEU ASP PHE THR GLU LYS ASP LEU PHE HIS GLU LYS GLU SEQRES 26 A 341 ILE ALA LEU ASN HIS LEU ALA GLN LEU GLU HIS HIS HIS SEQRES 27 A 341 HIS HIS HIS SEQRES 1 B 341 MET SER GLU ALA ALA HIS VAL LEU ILE THR GLY ALA ALA SEQRES 2 B 341 GLY GLN ILE GLY TYR ILE LEU SER HIS TRP ILE ALA SER SEQRES 3 B 341 GLY GLU LEU TYR GLY ASP ARG GLN VAL TYR LEU HIS LEU SEQRES 4 B 341 LEU ASP ILE PRO PRO ALA MET ASN ARG LEU THR ALA LEU SEQRES 5 B 341 THR MET GLU LEU GLU ASP CYS ALA PHE PRO HIS LEU ALA SEQRES 6 B 341 GLY PHE VAL ALA THR THR ASP PRO LYS ALA ALA PHE LYS SEQRES 7 B 341 ASP ILE ASP CYS ALA PHE LEU VAL ALA SER MET PRO LEU SEQRES 8 B 341 LYS PRO GLY GLN VAL ARG ALA ASP LEU ILE SER SER ASN SEQRES 9 B 341 SER VAL ILE PHE LYS ASN THR GLY GLU TYR LEU SER LYS SEQRES 10 B 341 TRP ALA LYS PRO SER VAL LYS VAL LEU VAL ILE GLY ASN SEQRES 11 B 341 PRO ASP ASN THR ASN CYS GLU ILE ALA MET LEU HIS ALA SEQRES 12 B 341 LYS ASN LEU LYS PRO GLU ASN PHE SER SER LEU SER MET SEQRES 13 B 341 LEU ASP GLN ASN ARG ALA TYR TYR GLU VAL ALA SER LYS SEQRES 14 B 341 LEU GLY VAL ASP VAL LYS ASP VAL HIS ASP ILE ILE VAL SEQRES 15 B 341 TRP GLY ASN HIS GLY GLU SER MET VAL ALA ASP LEU THR SEQRES 16 B 341 GLN ALA THR PHE THR LYS GLU GLY LYS THR GLN LYS VAL SEQRES 17 B 341 VAL ASP VAL LEU ASP HIS ASP TYR VAL PHE ASP THR PHE SEQRES 18 B 341 PHE LYS LYS ILE GLY HIS ARG ALA TRP ASP ILE LEU GLU SEQRES 19 B 341 HIS ARG GLY PHE THR SER ALA ALA SER PRO THR LYS ALA SEQRES 20 B 341 ALA ILE GLN HIS MET LYS ALA TRP LEU PHE GLY THR ALA SEQRES 21 B 341 PRO GLY GLU VAL LEU SER MET GLY ILE PRO VAL PRO GLU SEQRES 22 B 341 GLY ASN PRO TYR GLY ILE LYS PRO GLY VAL VAL PHE SER SEQRES 23 B 341 PHE PRO CYS ASN VAL ASP LYS GLU GLY LYS ILE HIS VAL SEQRES 24 B 341 VAL GLU GLY PHE LYS VAL ASN ASP TRP LEU ARG GLU LYS SEQRES 25 B 341 LEU ASP PHE THR GLU LYS ASP LEU PHE HIS GLU LYS GLU SEQRES 26 B 341 ILE ALA LEU ASN HIS LEU ALA GLN LEU GLU HIS HIS HIS SEQRES 27 B 341 HIS HIS HIS HET NAI A 345 71 HET OXM A 346 8 HET NAI B 345 71 HET OXM B 346 8 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM OXM OXAMIC ACID HETSYN NAI NADH FORMUL 3 NAI 2(C21 H29 N7 O14 P2) FORMUL 4 OXM 2(C2 H3 N O3) FORMUL 7 HOH *655(H2 O) HELIX 1 1 GLY A 14 SER A 26 1 13 HELIX 2 2 ILE A 42 PRO A 44 5 3 HELIX 3 3 ALA A 45 ASP A 58 1 14 HELIX 4 4 ASP A 72 LYS A 78 1 7 HELIX 5 5 VAL A 96 ASP A 99 5 4 HELIX 6 6 LEU A 100 ALA A 119 1 20 HELIX 7 7 PRO A 131 HIS A 142 1 12 HELIX 8 8 LYS A 147 GLU A 149 5 3 HELIX 9 9 SER A 155 GLY A 171 1 17 HELIX 10 10 ASP A 173 LYS A 175 5 3 HELIX 11 11 VAL A 209 VAL A 211 5 3 HELIX 12 12 ASP A 213 ASP A 219 1 7 HELIX 13 13 ASP A 219 GLY A 237 1 19 HELIX 14 14 ALA A 241 GLY A 258 1 18 HELIX 15 15 ASN A 306 LEU A 334 1 29 HELIX 16 16 GLY B 14 SER B 26 1 13 HELIX 17 17 ILE B 42 PRO B 44 5 3 HELIX 18 18 ALA B 45 ASP B 58 1 14 HELIX 19 19 ASP B 72 LYS B 78 1 7 HELIX 20 20 VAL B 96 ASP B 99 5 4 HELIX 21 21 LEU B 100 ALA B 119 1 20 HELIX 22 22 PRO B 131 HIS B 142 1 12 HELIX 23 23 LYS B 147 GLU B 149 5 3 HELIX 24 24 SER B 155 GLY B 171 1 17 HELIX 25 25 ASP B 173 LYS B 175 5 3 HELIX 26 26 VAL B 208 LEU B 212 1 5 HELIX 27 27 ASP B 213 PHE B 218 1 6 HELIX 28 28 ASP B 219 GLY B 237 1 19 HELIX 29 29 ALA B 241 GLY B 258 1 18 HELIX 30 30 ASN B 306 LEU B 331 1 26 SHEET 1 AA 9 LEU A 64 THR A 70 0 SHEET 2 AA 9 VAL A 35 LEU A 40 1 O VAL A 35 N ALA A 65 SHEET 3 AA 9 ALA A 5 THR A 10 1 O ALA A 5 N TYR A 36 SHEET 4 AA 9 CYS A 82 LEU A 85 1 O CYS A 82 N LEU A 8 SHEET 5 AA 9 LYS A 124 VAL A 127 1 O LYS A 124 N ALA A 83 SHEET 6 AA 9 PHE A 151 LEU A 154 1 O SER A 152 N VAL A 127 SHEET 7 AA 9 LEU A 265 PRO A 270 -1 O GLY A 268 N SER A 153 SHEET 8 AA 9 VAL A 284 VAL A 291 -1 O PHE A 285 N ILE A 269 SHEET 9 AA 9 ILE A 297 VAL A 299 -1 O HIS A 298 N ASN A 290 SHEET 1 AB 3 VAL A 177 HIS A 178 0 SHEET 2 AB 3 THR A 198 LYS A 201 -1 O THR A 198 N HIS A 178 SHEET 3 AB 3 LYS A 204 LYS A 207 -1 O LYS A 204 N LYS A 201 SHEET 1 AC 2 ILE A 181 TRP A 183 0 SHEET 2 AC 2 VAL A 191 ASP A 193 -1 O VAL A 191 N TRP A 183 SHEET 1 BA 9 LEU B 64 THR B 70 0 SHEET 2 BA 9 VAL B 35 LEU B 40 1 O VAL B 35 N ALA B 65 SHEET 3 BA 9 ALA B 5 THR B 10 1 O ALA B 5 N TYR B 36 SHEET 4 BA 9 CYS B 82 LEU B 85 1 O CYS B 82 N LEU B 8 SHEET 5 BA 9 LYS B 124 VAL B 127 1 O LYS B 124 N ALA B 83 SHEET 6 BA 9 PHE B 151 LEU B 154 1 O SER B 152 N VAL B 127 SHEET 7 BA 9 LEU B 265 PRO B 270 -1 O GLY B 268 N SER B 153 SHEET 8 BA 9 VAL B 284 VAL B 291 -1 O PHE B 285 N ILE B 269 SHEET 9 BA 9 ILE B 297 VAL B 299 -1 O HIS B 298 N ASN B 290 SHEET 1 BB 3 VAL B 177 HIS B 178 0 SHEET 2 BB 3 THR B 198 LYS B 201 -1 O THR B 198 N HIS B 178 SHEET 3 BB 3 LYS B 204 LYS B 207 -1 O LYS B 204 N LYS B 201 SHEET 1 BC 2 ILE B 181 TRP B 183 0 SHEET 2 BC 2 VAL B 191 ASP B 193 -1 O VAL B 191 N TRP B 183 CISPEP 1 ASN A 130 PRO A 131 0 -4.68 CISPEP 2 ASN B 130 PRO B 131 0 -6.88 SITE 1 AC1 32 GLY A 11 GLY A 14 GLN A 15 ILE A 16 SITE 2 AC1 32 ASP A 41 ILE A 42 ALA A 45 ARG A 48 SITE 3 AC1 32 VAL A 86 ALA A 87 SER A 88 ILE A 107 SITE 4 AC1 32 ILE A 128 ASN A 130 ASP A 132 LEU A 157 SITE 5 AC1 32 HIS A 186 SER A 240 PRO A 244 OXM A 346 SITE 6 AC1 32 HOH A2004 HOH A2055 HOH A2104 HOH A2105 SITE 7 AC1 32 HOH A2108 HOH A2182 HOH A2202 HOH A2301 SITE 8 AC1 32 HOH A2302 HOH A2396 HOH A2397 HOH A2399 SITE 1 AC2 10 ARG A 97 ASN A 130 LEU A 157 ARG A 161 SITE 2 AC2 10 HIS A 186 ALA A 229 SER A 240 NAI A 345 SITE 3 AC2 10 HOH A2182 HOH A2286 SITE 1 AC3 30 GLY B 11 ALA B 13 GLY B 14 GLN B 15 SITE 2 AC3 30 ILE B 16 ASP B 41 ILE B 42 ALA B 45 SITE 3 AC3 30 VAL B 86 ALA B 87 SER B 88 ILE B 107 SITE 4 AC3 30 ILE B 128 GLY B 129 ASN B 130 ASP B 132 SITE 5 AC3 30 LEU B 157 HIS B 186 SER B 240 PRO B 244 SITE 6 AC3 30 OXM B 346 HOH B2005 HOH B2009 HOH B2086 SITE 7 AC3 30 HOH B2088 HOH B2124 HOH B2138 HOH B2201 SITE 8 AC3 30 HOH B2242 HOH B2243 SITE 1 AC4 11 ARG B 97 ASN B 130 LEU B 157 ARG B 161 SITE 2 AC4 11 HIS B 186 ALA B 229 THR B 239 SER B 240 SITE 3 AC4 11 NAI B 345 HOH B2124 HOH B2190 CRYST1 80.120 82.680 114.250 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012481 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008753 0.00000