data_5A2L # _entry.id 5A2L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5A2L pdb_00005a2l 10.2210/pdb5a2l/pdb PDBE EBI-63827 ? ? WWPDB D_1290063827 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-06-03 2 'Structure model' 1 1 2015-07-08 3 'Structure model' 1 2 2015-08-26 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2024-01-10 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Refinement description' 11 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_chem_comp_identifier 5 4 'Structure model' pdbx_database_status 6 4 'Structure model' pdbx_entity_nonpoly 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site 9 4 'Structure model' struct_site_gen 10 5 'Structure model' chem_comp 11 5 'Structure model' chem_comp_atom 12 5 'Structure model' chem_comp_bond 13 5 'Structure model' database_2 14 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_atom_id' 2 4 'Structure model' '_atom_site.label_atom_id' 3 4 'Structure model' '_chem_comp.name' 4 4 'Structure model' '_chem_comp.type' 5 4 'Structure model' '_entity.pdbx_description' 6 4 'Structure model' '_pdbx_database_status.status_code_sf' 7 4 'Structure model' '_pdbx_entity_nonpoly.name' 8 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 4 'Structure model' '_struct_conn.pdbx_role' 10 5 'Structure model' '_chem_comp.pdbx_synonyms' 11 5 'Structure model' '_database_2.pdbx_DOI' 12 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5A2L _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-05-20 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 5A2I unspecified 'CRYSTAL STRUCTURE OF SCFV-SM3 IN COMPLEX WITH APD- SGALNAC-RP' PDB 5A2J unspecified 'CRYSTAL STRUCTURE OF SCFV-SM3 IN COMPLEX WITH THE NAKED PEPTIDE APDTRP' PDB 5A2K unspecified 'CRYSTAL STRUCTURE OF SCFV-SM3 IN COMPLEX WITH APD- TGALNAC-RP' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Martinez-Saez, N.' 1 'Castro-Lopez, J.' 2 'Valero-Gonzalez, J.' 3 'Madariaga, D.' 4 'Companon, I.' 5 'Somovilla, V.J.' 6 'Salvado, M.' 7 'Asensio, J.L.' 8 'Jimenez-Barbero, J.' 9 'Avenoza, A.' 10 'Busto, J.H.' 11 'Bernardes, G.J.L.' 12 'Peregrina, J.M.' 13 'Hurtado-Guerrero, R.' 14 'Corzana, F.' 15 # _citation.id primary _citation.title ;Deciphering the Non-Equivalence of Serine and Threonine O-Glycosylation Points: Implications for Molecular Recognition of the Tn Antigen by an Anti-Muc1 Antibody. ; _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 54 _citation.page_first 9830 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26118689 _citation.pdbx_database_id_DOI 10.1002/ANIE.201502813 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Martinez-Saez, N.' 1 ? primary 'Castro-Lopez, J.' 2 ? primary 'Valero-Gonzalez, J.' 3 ? primary 'Madariaga, D.' 4 ? primary 'Companon, I.' 5 ? primary 'Somovilla, V.J.' 6 ? primary 'Salvado, M.' 7 ? primary 'Asensio, J.L.' 8 ? primary 'Jimenez-Barbero, J.' 9 ? primary 'Avenoza, A.' 10 ? primary 'Busto, J.H.' 11 ? primary 'Bernardes, G.J.L.' 12 ? primary 'Peregrina, J.M.' 13 ? primary 'Hurtado-Guerrero, R.' 14 ? primary 'Corzana, F.' 15 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man SCFV-SM3 25742.338 1 ? ? 'RESIDUES 6-115,20-129' ? 2 polymer syn 'MODIFIED ANTIGEN TN' 658.747 1 ? ? ? 'CYS IS COVALENTLY BOUND TO GALNAC' 3 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 4 non-polymer man 2-acetamido-2-deoxy-alpha-D-galactopyranose 221.208 1 ? ? ? ? 5 water nat water 18.015 113 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QVQLQESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSS VYLQMNNLRAEDTGIYYCTGVGQFAYWGQGTTVTVSASSGGGGSGGGGGSSGSSDIVVTQESALTTSPGETVTLTCRSST GAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKL TVLG ; ;QVQLQESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSS VYLQMNNLRAEDTGIYYCTGVGQFAYWGQGTTVTVSASSGGGGSGGGGGSSGSSDIVVTQESALTTSPGETVTLTCRSST GAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKL TVLG ; H ? 2 'polypeptide(L)' no no APDCRP APDCRP P ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 1,2-ETHANEDIOL EDO 4 2-acetamido-2-deoxy-alpha-D-galactopyranose A2G 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 VAL n 1 3 GLN n 1 4 LEU n 1 5 GLN n 1 6 GLU n 1 7 SER n 1 8 GLY n 1 9 GLY n 1 10 GLY n 1 11 LEU n 1 12 VAL n 1 13 GLN n 1 14 PRO n 1 15 GLY n 1 16 GLY n 1 17 SER n 1 18 MET n 1 19 LYS n 1 20 LEU n 1 21 SER n 1 22 CYS n 1 23 VAL n 1 24 ALA n 1 25 SER n 1 26 GLY n 1 27 PHE n 1 28 THR n 1 29 PHE n 1 30 SER n 1 31 ASN n 1 32 TYR n 1 33 TRP n 1 34 MET n 1 35 ASN n 1 36 TRP n 1 37 VAL n 1 38 ARG n 1 39 GLN n 1 40 SER n 1 41 PRO n 1 42 GLU n 1 43 LYS n 1 44 GLY n 1 45 LEU n 1 46 GLU n 1 47 TRP n 1 48 VAL n 1 49 ALA n 1 50 GLU n 1 51 ILE n 1 52 ARG n 1 53 LEU n 1 54 LYS n 1 55 SER n 1 56 ASN n 1 57 ASN n 1 58 TYR n 1 59 ALA n 1 60 THR n 1 61 HIS n 1 62 TYR n 1 63 ALA n 1 64 GLU n 1 65 SER n 1 66 VAL n 1 67 LYS n 1 68 GLY n 1 69 ARG n 1 70 PHE n 1 71 THR n 1 72 ILE n 1 73 SER n 1 74 ARG n 1 75 ASP n 1 76 ASP n 1 77 SER n 1 78 LYS n 1 79 SER n 1 80 SER n 1 81 VAL n 1 82 TYR n 1 83 LEU n 1 84 GLN n 1 85 MET n 1 86 ASN n 1 87 ASN n 1 88 LEU n 1 89 ARG n 1 90 ALA n 1 91 GLU n 1 92 ASP n 1 93 THR n 1 94 GLY n 1 95 ILE n 1 96 TYR n 1 97 TYR n 1 98 CYS n 1 99 THR n 1 100 GLY n 1 101 VAL n 1 102 GLY n 1 103 GLN n 1 104 PHE n 1 105 ALA n 1 106 TYR n 1 107 TRP n 1 108 GLY n 1 109 GLN n 1 110 GLY n 1 111 THR n 1 112 THR n 1 113 VAL n 1 114 THR n 1 115 VAL n 1 116 SER n 1 117 ALA n 1 118 SER n 1 119 SER n 1 120 GLY n 1 121 GLY n 1 122 GLY n 1 123 GLY n 1 124 SER n 1 125 GLY n 1 126 GLY n 1 127 GLY n 1 128 GLY n 1 129 GLY n 1 130 SER n 1 131 SER n 1 132 GLY n 1 133 SER n 1 134 SER n 1 135 ASP n 1 136 ILE n 1 137 VAL n 1 138 VAL n 1 139 THR n 1 140 GLN n 1 141 GLU n 1 142 SER n 1 143 ALA n 1 144 LEU n 1 145 THR n 1 146 THR n 1 147 SER n 1 148 PRO n 1 149 GLY n 1 150 GLU n 1 151 THR n 1 152 VAL n 1 153 THR n 1 154 LEU n 1 155 THR n 1 156 CYS n 1 157 ARG n 1 158 SER n 1 159 SER n 1 160 THR n 1 161 GLY n 1 162 ALA n 1 163 VAL n 1 164 THR n 1 165 THR n 1 166 SER n 1 167 ASN n 1 168 TYR n 1 169 ALA n 1 170 ASN n 1 171 TRP n 1 172 VAL n 1 173 GLN n 1 174 GLU n 1 175 LYS n 1 176 PRO n 1 177 ASP n 1 178 HIS n 1 179 LEU n 1 180 PHE n 1 181 THR n 1 182 GLY n 1 183 LEU n 1 184 ILE n 1 185 GLY n 1 186 GLY n 1 187 THR n 1 188 ASN n 1 189 ASN n 1 190 ARG n 1 191 ALA n 1 192 PRO n 1 193 GLY n 1 194 VAL n 1 195 PRO n 1 196 ALA n 1 197 ARG n 1 198 PHE n 1 199 SER n 1 200 GLY n 1 201 SER n 1 202 LEU n 1 203 ILE n 1 204 GLY n 1 205 ASP n 1 206 LYS n 1 207 ALA n 1 208 ALA n 1 209 LEU n 1 210 THR n 1 211 ILE n 1 212 THR n 1 213 GLY n 1 214 ALA n 1 215 GLN n 1 216 THR n 1 217 GLU n 1 218 ASP n 1 219 GLU n 1 220 ALA n 1 221 ILE n 1 222 TYR n 1 223 PHE n 1 224 CYS n 1 225 ALA n 1 226 LEU n 1 227 TRP n 1 228 TYR n 1 229 SER n 1 230 ASN n 1 231 HIS n 1 232 TRP n 1 233 VAL n 1 234 PHE n 1 235 GLY n 1 236 GLY n 1 237 GLY n 1 238 THR n 1 239 LYS n 1 240 LEU n 1 241 THR n 1 242 VAL n 1 243 LEU n 1 244 GLY n 2 1 ALA n 2 2 PRO n 2 3 ASP n 2 4 CYS n 2 5 ARG n 2 6 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'HOUSE MOUSE' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MUS MUSCULUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'KOMAGATAELLA PASTORIS' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PPICZALPHAA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'HOMO SAPIENS' _pdbx_entity_src_syn.organism_common_name HUMAN _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A2G 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-galactopyranose ;N-acetyl-alpha-D-galactosamine; 2-acetamido-2-deoxy-alpha-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE ; 'C8 H15 N O6' 221.208 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A2G 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAca A2G 'COMMON NAME' GMML 1.0 N-acetyl-a-D-galactopyranosamine A2G 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GalpNAc A2G 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 ? ? ? H . n A 1 2 VAL 2 2 2 VAL VAL H . n A 1 3 GLN 3 3 3 GLN GLN H . n A 1 4 LEU 4 4 4 LEU LEU H . n A 1 5 GLN 5 5 5 GLN GLN H . n A 1 6 GLU 6 6 6 GLU GLU H . n A 1 7 SER 7 7 7 SER SER H . n A 1 8 GLY 8 8 8 GLY GLY H . n A 1 9 GLY 9 9 9 GLY GLY H . n A 1 10 GLY 10 10 10 GLY GLY H . n A 1 11 LEU 11 11 11 LEU LEU H . n A 1 12 VAL 12 12 12 VAL VAL H . n A 1 13 GLN 13 13 13 GLN GLN H . n A 1 14 PRO 14 14 14 PRO PRO H . n A 1 15 GLY 15 15 15 GLY GLY H . n A 1 16 GLY 16 16 16 GLY GLY H . n A 1 17 SER 17 17 17 SER SER H . n A 1 18 MET 18 18 18 MET MET H . n A 1 19 LYS 19 19 19 LYS LYS H . n A 1 20 LEU 20 20 20 LEU LEU H . n A 1 21 SER 21 21 21 SER SER H . n A 1 22 CYS 22 22 22 CYS CYS H . n A 1 23 VAL 23 23 23 VAL VAL H . n A 1 24 ALA 24 24 24 ALA ALA H . n A 1 25 SER 25 25 25 SER SER H . n A 1 26 GLY 26 26 26 GLY GLY H . n A 1 27 PHE 27 27 27 PHE PHE H . n A 1 28 THR 28 28 28 THR THR H . n A 1 29 PHE 29 29 29 PHE PHE H . n A 1 30 SER 30 30 30 SER SER H . n A 1 31 ASN 31 31 31 ASN ASN H . n A 1 32 TYR 32 32 32 TYR TYR H . n A 1 33 TRP 33 33 33 TRP TRP H . n A 1 34 MET 34 34 34 MET MET H . n A 1 35 ASN 35 35 35 ASN ASN H . n A 1 36 TRP 36 36 36 TRP TRP H . n A 1 37 VAL 37 37 37 VAL VAL H . n A 1 38 ARG 38 38 38 ARG ARG H . n A 1 39 GLN 39 39 39 GLN GLN H . n A 1 40 SER 40 40 40 SER SER H . n A 1 41 PRO 41 41 41 PRO PRO H . n A 1 42 GLU 42 42 42 GLU GLU H . n A 1 43 LYS 43 43 43 LYS LYS H . n A 1 44 GLY 44 44 44 GLY GLY H . n A 1 45 LEU 45 45 45 LEU LEU H . n A 1 46 GLU 46 46 46 GLU GLU H . n A 1 47 TRP 47 47 47 TRP TRP H . n A 1 48 VAL 48 48 48 VAL VAL H . n A 1 49 ALA 49 49 49 ALA ALA H . n A 1 50 GLU 50 50 50 GLU GLU H . n A 1 51 ILE 51 51 51 ILE ILE H . n A 1 52 ARG 52 52 52 ARG ARG H . n A 1 53 LEU 53 52 52 LEU LEU H A n A 1 54 LYS 54 52 52 LYS LYS H B n A 1 55 SER 55 52 52 SER SER H C n A 1 56 ASN 56 53 53 ASN ASN H . n A 1 57 ASN 57 54 54 ASN ASN H . n A 1 58 TYR 58 55 55 TYR TYR H . n A 1 59 ALA 59 56 56 ALA ALA H . n A 1 60 THR 60 57 57 THR THR H . n A 1 61 HIS 61 58 58 HIS HIS H . n A 1 62 TYR 62 59 59 TYR TYR H . n A 1 63 ALA 63 60 60 ALA ALA H . n A 1 64 GLU 64 61 61 GLU GLU H . n A 1 65 SER 65 62 62 SER SER H . n A 1 66 VAL 66 63 63 VAL VAL H . n A 1 67 LYS 67 64 64 LYS LYS H . n A 1 68 GLY 68 65 65 GLY GLY H . n A 1 69 ARG 69 66 66 ARG ARG H . n A 1 70 PHE 70 67 67 PHE PHE H . n A 1 71 THR 71 68 68 THR THR H . n A 1 72 ILE 72 69 69 ILE ILE H . n A 1 73 SER 73 70 70 SER SER H . n A 1 74 ARG 74 71 71 ARG ARG H . n A 1 75 ASP 75 72 72 ASP ASP H . n A 1 76 ASP 76 73 73 ASP ASP H . n A 1 77 SER 77 74 74 SER SER H . n A 1 78 LYS 78 75 75 LYS LYS H . n A 1 79 SER 79 76 76 SER SER H . n A 1 80 SER 80 77 77 SER SER H . n A 1 81 VAL 81 78 78 VAL VAL H . n A 1 82 TYR 82 79 79 TYR TYR H . n A 1 83 LEU 83 80 80 LEU LEU H . n A 1 84 GLN 84 81 81 GLN GLN H . n A 1 85 MET 85 82 82 MET MET H . n A 1 86 ASN 86 82 82 ASN ASN H A n A 1 87 ASN 87 82 82 ASN ASN H B n A 1 88 LEU 88 82 82 LEU LEU H C n A 1 89 ARG 89 83 83 ARG ARG H . n A 1 90 ALA 90 84 84 ALA ALA H . n A 1 91 GLU 91 85 85 GLU GLU H . n A 1 92 ASP 92 86 86 ASP ASP H . n A 1 93 THR 93 87 87 THR THR H . n A 1 94 GLY 94 88 88 GLY GLY H . n A 1 95 ILE 95 89 89 ILE ILE H . n A 1 96 TYR 96 90 90 TYR TYR H . n A 1 97 TYR 97 91 91 TYR TYR H . n A 1 98 CYS 98 92 92 CYS CYS H . n A 1 99 THR 99 93 93 THR THR H . n A 1 100 GLY 100 94 94 GLY GLY H . n A 1 101 VAL 101 95 95 VAL VAL H . n A 1 102 GLY 102 96 96 GLY GLY H . n A 1 103 GLN 103 97 97 GLN GLN H . n A 1 104 PHE 104 98 98 PHE PHE H . n A 1 105 ALA 105 101 101 ALA ALA H . n A 1 106 TYR 106 102 102 TYR TYR H . n A 1 107 TRP 107 103 103 TRP TRP H . n A 1 108 GLY 108 104 104 GLY GLY H . n A 1 109 GLN 109 105 105 GLN GLN H . n A 1 110 GLY 110 106 106 GLY GLY H . n A 1 111 THR 111 107 107 THR THR H . n A 1 112 THR 112 108 108 THR THR H . n A 1 113 VAL 113 109 109 VAL VAL H . n A 1 114 THR 114 110 110 THR THR H . n A 1 115 VAL 115 111 111 VAL VAL H . n A 1 116 SER 116 112 112 SER SER H . n A 1 117 ALA 117 113 ? ? ? H . n A 1 118 SER 118 114 ? ? ? H . n A 1 119 SER 119 115 ? ? ? H . n A 1 120 GLY 120 116 ? ? ? H . n A 1 121 GLY 121 117 ? ? ? H . n A 1 122 GLY 122 118 ? ? ? H . n A 1 123 GLY 123 119 ? ? ? H . n A 1 124 SER 124 120 ? ? ? H . n A 1 125 GLY 125 121 ? ? ? H . n A 1 126 GLY 126 122 ? ? ? H . n A 1 127 GLY 127 123 ? ? ? H . n A 1 128 GLY 128 124 ? ? ? H . n A 1 129 GLY 129 125 ? ? ? H . n A 1 130 SER 130 126 ? ? ? H . n A 1 131 SER 131 127 ? ? ? H . n A 1 132 GLY 132 128 ? ? ? H . n A 1 133 SER 133 129 ? ? ? H . n A 1 134 SER 134 130 ? ? ? H . n A 1 135 ASP 135 1002 1002 ASP ASP H . n A 1 136 ILE 136 1003 1003 ILE ILE H . n A 1 137 VAL 137 1004 1004 VAL VAL H . n A 1 138 VAL 138 1005 1005 VAL VAL H . n A 1 139 THR 139 1006 1006 THR THR H . n A 1 140 GLN 140 1007 1007 GLN GLN H . n A 1 141 GLU 141 1008 1008 GLU GLU H . n A 1 142 SER 142 1009 1009 SER SER H . n A 1 143 ALA 143 1010 1010 ALA ALA H . n A 1 144 LEU 144 1011 1011 LEU LEU H . n A 1 145 THR 145 1012 1012 THR THR H . n A 1 146 THR 146 1013 1013 THR THR H . n A 1 147 SER 147 1014 1014 SER SER H . n A 1 148 PRO 148 1015 1015 PRO PRO H . n A 1 149 GLY 149 1016 1016 GLY GLY H . n A 1 150 GLU 150 1017 1017 GLU GLU H . n A 1 151 THR 151 1018 1018 THR THR H . n A 1 152 VAL 152 1019 1019 VAL VAL H . n A 1 153 THR 153 1020 1020 THR THR H . n A 1 154 LEU 154 1021 1021 LEU LEU H . n A 1 155 THR 155 1022 1022 THR THR H . n A 1 156 CYS 156 1023 1023 CYS CYS H . n A 1 157 ARG 157 1024 1024 ARG ARG H . n A 1 158 SER 158 1025 1025 SER SER H . n A 1 159 SER 159 1026 1026 SER SER H . n A 1 160 THR 160 1027 1027 THR THR H . n A 1 161 GLY 161 1027 1027 GLY GLY H A n A 1 162 ALA 162 1027 1027 ALA ALA H B n A 1 163 VAL 163 1027 1027 VAL VAL H C n A 1 164 THR 164 1028 1028 THR THR H . n A 1 165 THR 165 1029 1029 THR THR H . n A 1 166 SER 166 1030 1030 SER SER H . n A 1 167 ASN 167 1031 1031 ASN ASN H . n A 1 168 TYR 168 1032 1032 TYR TYR H . n A 1 169 ALA 169 1033 1033 ALA ALA H . n A 1 170 ASN 170 1034 1034 ASN ASN H . n A 1 171 TRP 171 1035 1035 TRP TRP H . n A 1 172 VAL 172 1036 1036 VAL VAL H . n A 1 173 GLN 173 1037 1037 GLN GLN H . n A 1 174 GLU 174 1038 1038 GLU GLU H . n A 1 175 LYS 175 1039 1039 LYS LYS H . n A 1 176 PRO 176 1040 1040 PRO PRO H . n A 1 177 ASP 177 1041 1041 ASP ASP H . n A 1 178 HIS 178 1042 1042 HIS HIS H . n A 1 179 LEU 179 1043 1043 LEU LEU H . n A 1 180 PHE 180 1044 1044 PHE PHE H . n A 1 181 THR 181 1045 1045 THR THR H . n A 1 182 GLY 182 1046 1046 GLY GLY H . n A 1 183 LEU 183 1047 1047 LEU LEU H . n A 1 184 ILE 184 1048 1048 ILE ILE H . n A 1 185 GLY 185 1049 1049 GLY GLY H . n A 1 186 GLY 186 1050 1050 GLY GLY H . n A 1 187 THR 187 1051 1051 THR THR H . n A 1 188 ASN 188 1052 1052 ASN ASN H . n A 1 189 ASN 189 1053 1053 ASN ASN H . n A 1 190 ARG 190 1054 1054 ARG ARG H . n A 1 191 ALA 191 1055 1055 ALA ALA H . n A 1 192 PRO 192 1056 1056 PRO PRO H . n A 1 193 GLY 193 1057 1057 GLY GLY H . n A 1 194 VAL 194 1058 1058 VAL VAL H . n A 1 195 PRO 195 1059 1059 PRO PRO H . n A 1 196 ALA 196 1060 1060 ALA ALA H . n A 1 197 ARG 197 1061 1061 ARG ARG H . n A 1 198 PHE 198 1062 1062 PHE PHE H . n A 1 199 SER 199 1063 1063 SER SER H . n A 1 200 GLY 200 1064 1064 GLY GLY H . n A 1 201 SER 201 1065 1065 SER SER H . n A 1 202 LEU 202 1066 1066 LEU LEU H . n A 1 203 ILE 203 1067 1067 ILE ILE H . n A 1 204 GLY 204 1068 1068 GLY GLY H . n A 1 205 ASP 205 1069 1069 ASP ASP H . n A 1 206 LYS 206 1070 1070 LYS LYS H . n A 1 207 ALA 207 1071 1071 ALA ALA H . n A 1 208 ALA 208 1072 1072 ALA ALA H . n A 1 209 LEU 209 1073 1073 LEU LEU H . n A 1 210 THR 210 1074 1074 THR THR H . n A 1 211 ILE 211 1075 1075 ILE ILE H . n A 1 212 THR 212 1076 1076 THR THR H . n A 1 213 GLY 213 1077 1077 GLY GLY H . n A 1 214 ALA 214 1078 1078 ALA ALA H . n A 1 215 GLN 215 1079 1079 GLN GLN H . n A 1 216 THR 216 1080 1080 THR THR H . n A 1 217 GLU 217 1081 1081 GLU GLU H . n A 1 218 ASP 218 1082 1082 ASP ASP H . n A 1 219 GLU 219 1083 1083 GLU GLU H . n A 1 220 ALA 220 1084 1084 ALA ALA H . n A 1 221 ILE 221 1085 1085 ILE ILE H . n A 1 222 TYR 222 1086 1086 TYR TYR H . n A 1 223 PHE 223 1087 1087 PHE PHE H . n A 1 224 CYS 224 1088 1088 CYS CYS H . n A 1 225 ALA 225 1089 1089 ALA ALA H . n A 1 226 LEU 226 1090 1090 LEU LEU H . n A 1 227 TRP 227 1091 1091 TRP TRP H . n A 1 228 TYR 228 1092 1092 TYR TYR H . n A 1 229 SER 229 1093 1093 SER SER H . n A 1 230 ASN 230 1094 1094 ASN ASN H . n A 1 231 HIS 231 1095 1095 HIS HIS H . n A 1 232 TRP 232 1096 1096 TRP TRP H . n A 1 233 VAL 233 1097 1097 VAL VAL H . n A 1 234 PHE 234 1098 1098 PHE PHE H . n A 1 235 GLY 235 1099 1099 GLY GLY H . n A 1 236 GLY 236 1100 1100 GLY GLY H . n A 1 237 GLY 237 1101 1101 GLY GLY H . n A 1 238 THR 238 1102 1102 THR THR H . n A 1 239 LYS 239 1103 1103 LYS LYS H . n A 1 240 LEU 240 1104 1104 LEU LEU H . n A 1 241 THR 241 1105 1105 THR THR H . n A 1 242 VAL 242 1106 1106 VAL VAL H . n A 1 243 LEU 243 1106 1106 LEU LEU H A n A 1 244 GLY 244 1107 1107 GLY GLY H . n B 2 1 ALA 1 1 1 ALA ALA P . n B 2 2 PRO 2 2 2 PRO PRO P . n B 2 3 ASP 3 3 3 ASP ASP P . n B 2 4 CYS 4 4 4 CYS CYS P . n B 2 5 ARG 5 5 5 ARG ARG P . n B 2 6 PRO 6 6 6 PRO PRO P . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO 1 3001 3001 EDO EDO H . D 3 EDO 1 3002 3002 EDO EDO H . E 3 EDO 1 3003 3003 EDO EDO H . F 3 EDO 1 3004 3004 EDO EDO H . G 4 A2G 1 1009 1009 A2G A2G P . H 5 HOH 1 2001 2001 HOH HOH H . H 5 HOH 2 2002 2002 HOH HOH H . H 5 HOH 3 2003 2003 HOH HOH H . H 5 HOH 4 2004 2004 HOH HOH H . H 5 HOH 5 2005 2005 HOH HOH H . H 5 HOH 6 2006 2006 HOH HOH H . H 5 HOH 7 2007 2007 HOH HOH H . H 5 HOH 8 2008 2008 HOH HOH H . H 5 HOH 9 2009 2009 HOH HOH H . H 5 HOH 10 2010 2010 HOH HOH H . H 5 HOH 11 2011 2011 HOH HOH H . H 5 HOH 12 2012 2012 HOH HOH H . H 5 HOH 13 2013 2013 HOH HOH H . H 5 HOH 14 2014 2014 HOH HOH H . H 5 HOH 15 2015 2015 HOH HOH H . H 5 HOH 16 2016 2016 HOH HOH H . H 5 HOH 17 2017 2017 HOH HOH H . H 5 HOH 18 2018 2018 HOH HOH H . H 5 HOH 19 2019 2019 HOH HOH H . H 5 HOH 20 2020 2020 HOH HOH H . H 5 HOH 21 2021 2021 HOH HOH H . H 5 HOH 22 2022 2022 HOH HOH H . H 5 HOH 23 2023 2023 HOH HOH H . H 5 HOH 24 2024 2024 HOH HOH H . H 5 HOH 25 2025 2025 HOH HOH H . H 5 HOH 26 2026 2026 HOH HOH H . H 5 HOH 27 2027 2027 HOH HOH H . H 5 HOH 28 2028 2028 HOH HOH H . H 5 HOH 29 2029 2029 HOH HOH H . H 5 HOH 30 2030 2030 HOH HOH H . H 5 HOH 31 2031 2031 HOH HOH H . H 5 HOH 32 2032 2032 HOH HOH H . H 5 HOH 33 2033 2033 HOH HOH H . H 5 HOH 34 2034 2034 HOH HOH H . H 5 HOH 35 2035 2035 HOH HOH H . H 5 HOH 36 2036 2036 HOH HOH H . H 5 HOH 37 2037 2037 HOH HOH H . H 5 HOH 38 2038 2038 HOH HOH H . H 5 HOH 39 2039 2039 HOH HOH H . H 5 HOH 40 2040 2040 HOH HOH H . H 5 HOH 41 2041 2041 HOH HOH H . H 5 HOH 42 2042 2042 HOH HOH H . H 5 HOH 43 2043 2043 HOH HOH H . H 5 HOH 44 2044 2044 HOH HOH H . H 5 HOH 45 2045 2045 HOH HOH H . H 5 HOH 46 2046 2046 HOH HOH H . H 5 HOH 47 2047 2047 HOH HOH H . H 5 HOH 48 2048 2048 HOH HOH H . H 5 HOH 49 2049 2049 HOH HOH H . H 5 HOH 50 2050 2050 HOH HOH H . H 5 HOH 51 2051 2051 HOH HOH H . H 5 HOH 52 2052 2052 HOH HOH H . H 5 HOH 53 2053 2053 HOH HOH H . H 5 HOH 54 2054 2054 HOH HOH H . H 5 HOH 55 2055 2055 HOH HOH H . H 5 HOH 56 2056 2056 HOH HOH H . H 5 HOH 57 2057 2057 HOH HOH H . H 5 HOH 58 2058 2058 HOH HOH H . H 5 HOH 59 2059 2059 HOH HOH H . H 5 HOH 60 2060 2060 HOH HOH H . H 5 HOH 61 2061 2061 HOH HOH H . H 5 HOH 62 2062 2062 HOH HOH H . H 5 HOH 63 2063 2063 HOH HOH H . H 5 HOH 64 2064 2064 HOH HOH H . H 5 HOH 65 2065 2065 HOH HOH H . H 5 HOH 66 2066 2066 HOH HOH H . H 5 HOH 67 2067 2067 HOH HOH H . H 5 HOH 68 2068 2068 HOH HOH H . H 5 HOH 69 2069 2069 HOH HOH H . H 5 HOH 70 2070 2070 HOH HOH H . H 5 HOH 71 2071 2071 HOH HOH H . H 5 HOH 72 2072 2072 HOH HOH H . H 5 HOH 73 2073 2073 HOH HOH H . H 5 HOH 74 2074 2074 HOH HOH H . H 5 HOH 75 2075 2075 HOH HOH H . H 5 HOH 76 2076 2076 HOH HOH H . H 5 HOH 77 2077 2077 HOH HOH H . H 5 HOH 78 2078 2078 HOH HOH H . H 5 HOH 79 2079 2079 HOH HOH H . H 5 HOH 80 2080 2080 HOH HOH H . H 5 HOH 81 2081 2081 HOH HOH H . H 5 HOH 82 2082 2082 HOH HOH H . H 5 HOH 83 2083 2083 HOH HOH H . H 5 HOH 84 2084 2084 HOH HOH H . H 5 HOH 85 2085 2085 HOH HOH H . H 5 HOH 86 2086 2086 HOH HOH H . H 5 HOH 87 2087 2087 HOH HOH H . H 5 HOH 88 2088 2088 HOH HOH H . H 5 HOH 89 2089 2089 HOH HOH H . H 5 HOH 90 2090 2090 HOH HOH H . H 5 HOH 91 2091 2091 HOH HOH H . H 5 HOH 92 2092 2092 HOH HOH H . H 5 HOH 93 2093 2093 HOH HOH H . H 5 HOH 94 2094 2094 HOH HOH H . H 5 HOH 95 2095 2095 HOH HOH H . H 5 HOH 96 2096 2096 HOH HOH H . H 5 HOH 97 2097 2097 HOH HOH H . H 5 HOH 98 2098 2098 HOH HOH H . H 5 HOH 99 2099 2099 HOH HOH H . H 5 HOH 100 2100 2100 HOH HOH H . H 5 HOH 101 2101 2101 HOH HOH H . H 5 HOH 102 2102 2102 HOH HOH H . H 5 HOH 103 2103 2103 HOH HOH H . H 5 HOH 104 2104 2104 HOH HOH H . H 5 HOH 105 2105 2105 HOH HOH H . H 5 HOH 106 2106 2106 HOH HOH H . H 5 HOH 107 2107 2107 HOH HOH H . H 5 HOH 108 2108 2108 HOH HOH H . I 5 HOH 1 2001 2001 HOH HOH P . I 5 HOH 2 2002 2002 HOH HOH P . I 5 HOH 3 2003 2003 HOH HOH P . I 5 HOH 4 2004 2004 HOH HOH P . I 5 HOH 5 2005 2005 HOH HOH P . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.8.0049 ? 1 XDS 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _cell.entry_id 5A2L _cell.length_a 46.080 _cell.length_b 35.190 _cell.length_c 66.290 _cell.angle_alpha 90.00 _cell.angle_beta 103.01 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5A2L _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # _exptl.entry_id 5A2L _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.94 _exptl_crystal.density_percent_sol 36.71 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength 0.97 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5A2L _reflns.observed_criterion_sigma_I 1.98 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 64.59 _reflns.d_resolution_high 1.79 _reflns.number_obs 19905 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.11 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.60 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.6 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.79 _reflns_shell.d_res_low 1.88 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.60 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.40 _reflns_shell.pdbx_redundancy 3.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5A2L _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 19308 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 64.59 _refine.ls_d_res_high 1.79 _refine.ls_percent_reflns_obs 99.42 _refine.ls_R_factor_obs 0.18500 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18442 _refine.ls_R_factor_R_free 0.20447 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 2.9 _refine.ls_number_reflns_R_free 575 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.957 _refine.B_iso_mean 27.314 _refine.aniso_B[1][1] 0.42 _refine.aniso_B[2][2] -1.66 _refine.aniso_B[3][3] 0.15 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 2.33 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 1SM3' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.135 _refine.pdbx_overall_ESU_R_Free 0.116 _refine.overall_SU_ML 0.104 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.496 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1759 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 113 _refine_hist.number_atoms_total 1902 _refine_hist.d_res_high 1.79 _refine_hist.d_res_low 64.59 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.020 ? 1826 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1677 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.528 1.940 ? 2461 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.767 3.001 ? 3843 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.715 5.000 ? 221 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.849 24.026 ? 77 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.683 15.000 ? 275 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.595 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.079 0.200 ? 278 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 2019 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 425 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.920 2.547 ? 914 'X-RAY DIFFRACTION' ? r_mcbond_other 1.918 2.545 ? 913 'X-RAY DIFFRACTION' ? r_mcangle_it 3.199 3.797 ? 1119 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.286 2.847 ? 912 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.786 _refine_ls_shell.d_res_low 1.832 _refine_ls_shell.number_reflns_R_work 1425 _refine_ls_shell.R_factor_R_work 0.268 _refine_ls_shell.percent_reflns_obs 99.86 _refine_ls_shell.R_factor_R_free 0.284 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 52 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 5A2L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 5A2L _struct.title 'Crystal structure of scFv-SM3 in complex with APD-CGalNAc-RP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5A2L _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'IMMUNE SYSTEM, PEPTIDE BINDING PROTEIN, GLYCOPEPTIDES, ANTIBODIES, MOLECULAR RECOGNITION, CONFORMATION ANALYSIS, FUSION PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP HVM32_MOUSE 1 ? ? P01801 ? 2 UNP LV1E_MOUSE 1 ? ? P01727 ? 3 PDB 5A2L 2 ? ? 5A2L ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5A2L H 6 ? 117 ? P01801 6 ? 115 ? 6 113 2 2 5A2L H 136 ? 244 ? P01727 20 ? 129 ? 1003 1107 3 3 5A2L P 1 ? 6 ? 5A2L 1 ? 6 ? 1 6 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5A2L GLN H 1 ? UNP P01801 ? ? 'cloning artifact' 1 1 1 5A2L VAL H 2 ? UNP P01801 ? ? 'cloning artifact' 2 2 1 5A2L GLN H 3 ? UNP P01801 ? ? 'cloning artifact' 3 3 1 5A2L LEU H 4 ? UNP P01801 ? ? 'cloning artifact' 4 4 1 5A2L GLN H 5 ? UNP P01801 ? ? 'cloning artifact' 5 5 1 5A2L GLY H 100 ? UNP P01801 ? ? insertion 94 6 1 5A2L VAL H 101 ? UNP P01801 THR 100 conflict 95 7 1 5A2L GLN H 103 ? UNP P01801 ? ? insertion 97 8 1 5A2L THR H 112 ? UNP P01801 LEU 110 conflict 108 9 1 5A2L SER H 118 ? UNP P01801 ? ? linker 114 10 1 5A2L SER H 119 ? UNP P01801 ? ? linker 115 11 1 5A2L GLY H 120 ? UNP P01801 ? ? linker 116 12 1 5A2L GLY H 121 ? UNP P01801 ? ? linker 117 13 1 5A2L GLY H 122 ? UNP P01801 ? ? linker 118 14 1 5A2L GLY H 123 ? UNP P01801 ? ? linker 119 15 1 5A2L SER H 124 ? UNP P01801 ? ? linker 120 16 1 5A2L GLY H 125 ? UNP P01801 ? ? linker 121 17 1 5A2L GLY H 126 ? UNP P01801 ? ? linker 122 18 1 5A2L GLY H 127 ? UNP P01801 ? ? linker 123 19 1 5A2L GLY H 128 ? UNP P01801 ? ? linker 124 20 1 5A2L GLY H 129 ? UNP P01801 ? ? linker 125 21 1 5A2L SER H 130 ? UNP P01801 ? ? linker 126 22 1 5A2L SER H 131 ? UNP P01801 ? ? linker 127 23 1 5A2L GLY H 132 ? UNP P01801 ? ? linker 128 24 1 5A2L SER H 133 ? UNP P01801 ? ? linker 129 25 1 5A2L SER H 134 ? UNP P01801 ? ? linker 130 26 1 5A2L ASP H 135 ? UNP P01727 GLN 20 conflict 1002 27 1 5A2L ILE H 136 ? UNP P01727 ALA 21 conflict 1003 28 1 5A2L ALA H 214 ? UNP P01727 THR 98 conflict 1078 29 1 5A2L ILE H 221 ? UNP P01727 MET 106 conflict 1085 30 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1070 ? 1 MORE -8.1 ? 1 'SSA (A^2)' 12460 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 28 ? TYR A 32 ? THR H 28 TYR H 32 5 ? 5 HELX_P HELX_P2 2 LEU A 53 A ASN A 57 ? LEU H 52 ASN H 54 5 ? 5 HELX_P HELX_P3 3 GLU A 64 ? LYS A 67 ? GLU H 61 LYS H 64 5 ? 4 HELX_P HELX_P4 4 ASP A 76 ? LYS A 78 ? ASP H 73 LYS H 75 5 ? 3 HELX_P HELX_P5 5 ARG A 89 ? THR A 93 ? ARG H 83 THR H 87 5 ? 5 HELX_P HELX_P6 6 THR A 164 ? TYR A 168 ? THR H 1028 TYR H 1032 5 ? 5 HELX_P HELX_P7 7 GLN A 215 ? GLU A 219 ? GLN H 1079 GLU H 1083 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 98 SG ? ? H CYS 22 H CYS 92 1_555 ? ? ? ? ? ? ? 2.069 ? ? disulf2 disulf ? ? A CYS 156 SG ? ? ? 1_555 A CYS 224 SG ? ? H CYS 1023 H CYS 1088 1_555 ? ? ? ? ? ? ? 2.074 ? ? covale1 covale one ? B CYS 4 SG ? ? ? 1_555 G A2G . C1 ? ? P CYS 4 P A2G 1009 1_555 ? ? ? ? ? ? ? 1.635 ? S-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 102 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 96 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 GLN _struct_mon_prot_cis.pdbx_label_seq_id_2 103 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLN _struct_mon_prot_cis.pdbx_auth_seq_id_2 97 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.93 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details HA ? 4 ? HB ? 4 ? HC ? 6 ? HD ? 2 ? HE ? 4 ? HF ? 4 ? HG ? 6 ? HH ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense HA 1 2 ? anti-parallel HA 2 3 ? anti-parallel HA 3 4 ? anti-parallel HB 1 2 ? parallel HB 2 3 ? anti-parallel HB 3 4 ? anti-parallel HC 1 2 ? parallel HC 2 3 ? anti-parallel HC 3 4 ? anti-parallel HC 4 5 ? anti-parallel HC 5 6 ? anti-parallel HD 1 2 ? anti-parallel HE 1 2 ? anti-parallel HE 2 3 ? anti-parallel HE 3 4 ? anti-parallel HF 1 2 ? parallel HF 2 3 ? anti-parallel HF 3 4 ? anti-parallel HG 1 2 ? parallel HG 2 3 ? anti-parallel HG 3 4 ? anti-parallel HG 4 5 ? anti-parallel HG 5 6 ? anti-parallel HH 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id HA 1 GLN A 3 ? SER A 7 ? GLN H 3 SER H 7 HA 2 MET A 18 ? SER A 25 ? MET H 18 SER H 25 HA 3 SER A 80 ? MET A 85 ? SER H 77 MET H 82 HA 4 PHE A 70 ? ASP A 75 ? PHE H 67 ASP H 72 HB 1 GLY A 10 ? VAL A 12 ? GLY H 10 VAL H 12 HB 2 THR A 111 ? VAL A 115 ? THR H 107 VAL H 111 HB 3 GLY A 94 ? GLY A 100 ? GLY H 88 GLY H 94 HB 4 TYR A 106 ? TRP A 107 ? TYR H 102 TRP H 103 HC 1 GLY A 10 ? VAL A 12 ? GLY H 10 VAL H 12 HC 2 THR A 111 ? VAL A 115 ? THR H 107 VAL H 111 HC 3 GLY A 94 ? GLY A 100 ? GLY H 88 GLY H 94 HC 4 MET A 34 ? SER A 40 ? MET H 34 SER H 40 HC 5 GLY A 44 ? ILE A 51 ? GLY H 44 ILE H 51 HC 6 THR A 60 ? TYR A 62 ? THR H 57 TYR H 59 HD 1 TYR A 106 ? TRP A 107 ? TYR H 102 TRP H 103 HD 2 GLY A 94 ? GLY A 100 ? GLY H 88 GLY H 94 HE 1 VAL A 138 ? GLN A 140 ? VAL H 1005 GLN H 1007 HE 2 THR A 151 ? SER A 158 ? THR H 1018 SER H 1025 HE 3 LYS A 206 ? THR A 212 ? LYS H 1070 THR H 1076 HE 4 PHE A 198 ? ILE A 203 ? PHE H 1062 ILE H 1067 HF 1 ALA A 143 ? THR A 146 ? ALA H 1010 THR H 1013 HF 2 THR A 238 ? VAL A 242 ? THR H 1102 VAL H 1106 HF 3 ALA A 220 ? TRP A 227 ? ALA H 1084 TRP H 1091 HF 4 TRP A 232 ? PHE A 234 ? TRP H 1096 PHE H 1098 HG 1 ALA A 143 ? THR A 146 ? ALA H 1010 THR H 1013 HG 2 THR A 238 ? VAL A 242 ? THR H 1102 VAL H 1106 HG 3 ALA A 220 ? TRP A 227 ? ALA H 1084 TRP H 1091 HG 4 ASN A 170 ? LYS A 175 ? ASN H 1034 LYS H 1039 HG 5 LEU A 179 ? GLY A 185 ? LEU H 1043 GLY H 1049 HG 6 ASN A 189 ? ARG A 190 ? ASN H 1053 ARG H 1054 HH 1 TRP A 232 ? PHE A 234 ? TRP H 1096 PHE H 1098 HH 2 ALA A 220 ? TRP A 227 ? ALA H 1084 TRP H 1091 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id HA 1 2 N SER A 7 ? N SER H 7 O SER A 21 ? O SER H 21 HA 2 3 N CYS A 22 ? N CYS H 22 O VAL A 81 ? O VAL H 78 HA 3 4 N GLN A 84 ? N GLN H 81 O THR A 71 ? O THR H 68 HB 1 2 N GLY A 10 ? N GLY H 10 O THR A 112 ? O THR H 108 HB 2 3 N VAL A 113 ? N VAL H 109 O GLY A 94 ? O GLY H 88 HB 3 4 N GLY A 100 ? N GLY H 94 O TYR A 106 ? O TYR H 102 HC 1 2 N GLY A 10 ? N GLY H 10 O THR A 112 ? O THR H 108 HC 2 3 N VAL A 113 ? N VAL H 109 O GLY A 94 ? O GLY H 88 HC 3 4 N THR A 99 ? N THR H 93 O ASN A 35 ? O ASN H 35 HC 4 5 N SER A 40 ? N SER H 40 O GLY A 44 ? O GLY H 44 HC 5 6 N GLU A 50 ? N GLU H 50 O HIS A 61 ? O HIS H 58 HD 1 2 N TYR A 106 ? N TYR H 102 O GLY A 100 ? O GLY H 94 HE 1 2 N THR A 139 ? N THR H 1006 O ARG A 157 ? O ARG H 1024 HE 2 3 N CYS A 156 ? N CYS H 1023 O ALA A 207 ? O ALA H 1071 HE 3 4 N THR A 210 ? N THR H 1074 O SER A 199 ? O SER H 1063 HF 1 2 N LEU A 144 ? N LEU H 1011 O LYS A 239 ? O LYS H 1103 HF 2 3 N LEU A 240 ? N LEU H 1104 O ALA A 220 ? O ALA H 1084 HF 3 4 N LEU A 226 ? N LEU H 1090 O VAL A 233 ? O VAL H 1097 HG 1 2 N LEU A 144 ? N LEU H 1011 O LYS A 239 ? O LYS H 1103 HG 2 3 N LEU A 240 ? N LEU H 1104 O ALA A 220 ? O ALA H 1084 HG 3 4 N ALA A 225 ? N ALA H 1089 O ASN A 170 ? O ASN H 1034 HG 4 5 N LYS A 175 ? N LYS H 1039 O LEU A 179 ? O LEU H 1043 HG 5 6 N GLY A 185 ? N GLY H 1049 O ASN A 189 ? O ASN H 1053 HH 1 2 N VAL A 233 ? N VAL H 1097 O LEU A 226 ? O LEU H 1090 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NH2 H ARG 66 ? ? OD2 H ASP 86 ? ? 2.09 2 1 OE1 H GLN 1079 ? ? O H HOH 2102 ? ? 2.10 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 H _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2064 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 H _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2102 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_645 _pdbx_validate_symm_contact.dist 1.28 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C H ARG 52 ? ? N H LEU 52 A ? 1.617 1.336 0.281 0.023 Y 2 1 C H LEU 52 A ? N H LYS 52 B ? 1.568 1.336 0.232 0.023 Y 3 1 C H ASN 82 A ? N H ASN 82 B ? 1.649 1.336 0.313 0.023 Y 4 1 C H ASN 82 B ? N H LEU 82 C ? 1.555 1.336 0.219 0.023 Y 5 1 C H PHE 98 ? ? N H ALA 101 ? ? 1.532 1.336 0.196 0.023 Y 6 1 C H THR 1027 ? ? N H GLY 1027 A ? 1.482 1.336 0.146 0.023 Y 7 1 C H GLY 1027 A ? N H ALA 1027 B ? 1.522 1.336 0.186 0.023 Y 8 1 C H ALA 1027 B ? N H VAL 1027 C ? 1.508 1.336 0.172 0.023 Y 9 1 C H VAL 1106 ? ? N H LEU 1106 A ? 1.556 1.336 0.220 0.023 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE H ARG 52 ? ? CZ H ARG 52 ? ? NH1 H ARG 52 ? ? 124.50 120.30 4.20 0.50 N 2 1 NE H ARG 66 ? ? CZ H ARG 66 ? ? NH1 H ARG 66 ? ? 123.56 120.30 3.26 0.50 N 3 1 NE H ARG 66 ? ? CZ H ARG 66 ? ? NH2 H ARG 66 ? ? 116.79 120.30 -3.51 0.50 N 4 1 O H THR 1027 ? ? C H THR 1027 ? ? N H GLY 1027 A ? 110.89 123.20 -12.31 1.70 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL H 95 ? ? 77.60 107.06 2 1 PRO H 1040 ? ? -27.31 120.06 3 1 ASP H 1041 ? ? 64.07 69.61 4 1 THR H 1051 ? ? 79.34 -54.08 5 1 SER H 1093 ? ? 74.51 -60.18 6 1 ASN H 1094 ? ? -146.66 19.00 7 1 PRO P 2 ? ? -84.74 -157.92 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 ASN H 82 A ? 12.45 2 1 ASN H 82 B ? 16.27 # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C H ARG 52 ? ? N H LEU 52 A ? 1.62 2 1 C H LYS 52 B ? N H SER 52 C ? 1.67 3 1 C H MET 82 ? ? N H ASN 82 A ? 1.66 4 1 C H ASN 82 A ? N H ASN 82 B ? 1.65 # _pdbx_entry_details.entry_id 5A2L _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;RESIDUE RANGE 1002-1107 FOR CHAIN H MAPS TO CHAIN L OF PDB ENTRY 1SM3 CHAIN P REPRESENTS A SHORTER VERISON OF THE PEPTIDE PRESENT IN PDB ENTRY 1SM3 ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 H GLN 1 ? A GLN 1 2 1 Y 1 H ALA 113 ? A ALA 117 3 1 Y 1 H SER 114 ? A SER 118 4 1 Y 1 H SER 115 ? A SER 119 5 1 Y 1 H GLY 116 ? A GLY 120 6 1 Y 1 H GLY 117 ? A GLY 121 7 1 Y 1 H GLY 118 ? A GLY 122 8 1 Y 1 H GLY 119 ? A GLY 123 9 1 Y 1 H SER 120 ? A SER 124 10 1 Y 1 H GLY 121 ? A GLY 125 11 1 Y 1 H GLY 122 ? A GLY 126 12 1 Y 1 H GLY 123 ? A GLY 127 13 1 Y 1 H GLY 124 ? A GLY 128 14 1 Y 1 H GLY 125 ? A GLY 129 15 1 Y 1 H SER 126 ? A SER 130 16 1 Y 1 H SER 127 ? A SER 131 17 1 Y 1 H GLY 128 ? A GLY 132 18 1 Y 1 H SER 129 ? A SER 133 19 1 Y 1 H SER 130 ? A SER 134 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A2G O5 O N N 1 A2G C1 C N S 2 A2G O1 O N N 3 A2G C2 C N R 4 A2G N2 N N N 5 A2G C3 C N R 6 A2G O3 O N N 7 A2G C4 C N R 8 A2G O4 O N N 9 A2G C5 C N R 10 A2G C6 C N N 11 A2G O6 O N N 12 A2G C7 C N N 13 A2G O7 O N N 14 A2G C8 C N N 15 A2G H1 H N N 16 A2G HO1 H N N 17 A2G H2 H N N 18 A2G HN2 H N N 19 A2G H3 H N N 20 A2G HO3 H N N 21 A2G H4 H N N 22 A2G HO4 H N N 23 A2G H5 H N N 24 A2G H61 H N N 25 A2G H81 H N N 26 A2G H82 H N N 27 A2G H83 H N N 28 A2G H62 H N N 29 A2G HO6 H N N 30 ALA N N N N 31 ALA CA C N S 32 ALA C C N N 33 ALA O O N N 34 ALA CB C N N 35 ALA OXT O N N 36 ALA H H N N 37 ALA H2 H N N 38 ALA HA H N N 39 ALA HB1 H N N 40 ALA HB2 H N N 41 ALA HB3 H N N 42 ALA HXT H N N 43 ARG N N N N 44 ARG CA C N S 45 ARG C C N N 46 ARG O O N N 47 ARG CB C N N 48 ARG CG C N N 49 ARG CD C N N 50 ARG NE N N N 51 ARG CZ C N N 52 ARG NH1 N N N 53 ARG NH2 N N N 54 ARG OXT O N N 55 ARG H H N N 56 ARG H2 H N N 57 ARG HA H N N 58 ARG HB2 H N N 59 ARG HB3 H N N 60 ARG HG2 H N N 61 ARG HG3 H N N 62 ARG HD2 H N N 63 ARG HD3 H N N 64 ARG HE H N N 65 ARG HH11 H N N 66 ARG HH12 H N N 67 ARG HH21 H N N 68 ARG HH22 H N N 69 ARG HXT H N N 70 ASN N N N N 71 ASN CA C N S 72 ASN C C N N 73 ASN O O N N 74 ASN CB C N N 75 ASN CG C N N 76 ASN OD1 O N N 77 ASN ND2 N N N 78 ASN OXT O N N 79 ASN H H N N 80 ASN H2 H N N 81 ASN HA H N N 82 ASN HB2 H N N 83 ASN HB3 H N N 84 ASN HD21 H N N 85 ASN HD22 H N N 86 ASN HXT H N N 87 ASP N N N N 88 ASP CA C N S 89 ASP C C N N 90 ASP O O N N 91 ASP CB C N N 92 ASP CG C N N 93 ASP OD1 O N N 94 ASP OD2 O N N 95 ASP OXT O N N 96 ASP H H N N 97 ASP H2 H N N 98 ASP HA H N N 99 ASP HB2 H N N 100 ASP HB3 H N N 101 ASP HD2 H N N 102 ASP HXT H N N 103 CYS N N N N 104 CYS CA C N R 105 CYS C C N N 106 CYS O O N N 107 CYS CB C N N 108 CYS SG S N N 109 CYS OXT O N N 110 CYS H H N N 111 CYS H2 H N N 112 CYS HA H N N 113 CYS HB2 H N N 114 CYS HB3 H N N 115 CYS HG H N N 116 CYS HXT H N N 117 EDO C1 C N N 118 EDO O1 O N N 119 EDO C2 C N N 120 EDO O2 O N N 121 EDO H11 H N N 122 EDO H12 H N N 123 EDO HO1 H N N 124 EDO H21 H N N 125 EDO H22 H N N 126 EDO HO2 H N N 127 GLN N N N N 128 GLN CA C N S 129 GLN C C N N 130 GLN O O N N 131 GLN CB C N N 132 GLN CG C N N 133 GLN CD C N N 134 GLN OE1 O N N 135 GLN NE2 N N N 136 GLN OXT O N N 137 GLN H H N N 138 GLN H2 H N N 139 GLN HA H N N 140 GLN HB2 H N N 141 GLN HB3 H N N 142 GLN HG2 H N N 143 GLN HG3 H N N 144 GLN HE21 H N N 145 GLN HE22 H N N 146 GLN HXT H N N 147 GLU N N N N 148 GLU CA C N S 149 GLU C C N N 150 GLU O O N N 151 GLU CB C N N 152 GLU CG C N N 153 GLU CD C N N 154 GLU OE1 O N N 155 GLU OE2 O N N 156 GLU OXT O N N 157 GLU H H N N 158 GLU H2 H N N 159 GLU HA H N N 160 GLU HB2 H N N 161 GLU HB3 H N N 162 GLU HG2 H N N 163 GLU HG3 H N N 164 GLU HE2 H N N 165 GLU HXT H N N 166 GLY N N N N 167 GLY CA C N N 168 GLY C C N N 169 GLY O O N N 170 GLY OXT O N N 171 GLY H H N N 172 GLY H2 H N N 173 GLY HA2 H N N 174 GLY HA3 H N N 175 GLY HXT H N N 176 HIS N N N N 177 HIS CA C N S 178 HIS C C N N 179 HIS O O N N 180 HIS CB C N N 181 HIS CG C Y N 182 HIS ND1 N Y N 183 HIS CD2 C Y N 184 HIS CE1 C Y N 185 HIS NE2 N Y N 186 HIS OXT O N N 187 HIS H H N N 188 HIS H2 H N N 189 HIS HA H N N 190 HIS HB2 H N N 191 HIS HB3 H N N 192 HIS HD1 H N N 193 HIS HD2 H N N 194 HIS HE1 H N N 195 HIS HE2 H N N 196 HIS HXT H N N 197 HOH O O N N 198 HOH H1 H N N 199 HOH H2 H N N 200 ILE N N N N 201 ILE CA C N S 202 ILE C C N N 203 ILE O O N N 204 ILE CB C N S 205 ILE CG1 C N N 206 ILE CG2 C N N 207 ILE CD1 C N N 208 ILE OXT O N N 209 ILE H H N N 210 ILE H2 H N N 211 ILE HA H N N 212 ILE HB H N N 213 ILE HG12 H N N 214 ILE HG13 H N N 215 ILE HG21 H N N 216 ILE HG22 H N N 217 ILE HG23 H N N 218 ILE HD11 H N N 219 ILE HD12 H N N 220 ILE HD13 H N N 221 ILE HXT H N N 222 LEU N N N N 223 LEU CA C N S 224 LEU C C N N 225 LEU O O N N 226 LEU CB C N N 227 LEU CG C N N 228 LEU CD1 C N N 229 LEU CD2 C N N 230 LEU OXT O N N 231 LEU H H N N 232 LEU H2 H N N 233 LEU HA H N N 234 LEU HB2 H N N 235 LEU HB3 H N N 236 LEU HG H N N 237 LEU HD11 H N N 238 LEU HD12 H N N 239 LEU HD13 H N N 240 LEU HD21 H N N 241 LEU HD22 H N N 242 LEU HD23 H N N 243 LEU HXT H N N 244 LYS N N N N 245 LYS CA C N S 246 LYS C C N N 247 LYS O O N N 248 LYS CB C N N 249 LYS CG C N N 250 LYS CD C N N 251 LYS CE C N N 252 LYS NZ N N N 253 LYS OXT O N N 254 LYS H H N N 255 LYS H2 H N N 256 LYS HA H N N 257 LYS HB2 H N N 258 LYS HB3 H N N 259 LYS HG2 H N N 260 LYS HG3 H N N 261 LYS HD2 H N N 262 LYS HD3 H N N 263 LYS HE2 H N N 264 LYS HE3 H N N 265 LYS HZ1 H N N 266 LYS HZ2 H N N 267 LYS HZ3 H N N 268 LYS HXT H N N 269 MET N N N N 270 MET CA C N S 271 MET C C N N 272 MET O O N N 273 MET CB C N N 274 MET CG C N N 275 MET SD S N N 276 MET CE C N N 277 MET OXT O N N 278 MET H H N N 279 MET H2 H N N 280 MET HA H N N 281 MET HB2 H N N 282 MET HB3 H N N 283 MET HG2 H N N 284 MET HG3 H N N 285 MET HE1 H N N 286 MET HE2 H N N 287 MET HE3 H N N 288 MET HXT H N N 289 PHE N N N N 290 PHE CA C N S 291 PHE C C N N 292 PHE O O N N 293 PHE CB C N N 294 PHE CG C Y N 295 PHE CD1 C Y N 296 PHE CD2 C Y N 297 PHE CE1 C Y N 298 PHE CE2 C Y N 299 PHE CZ C Y N 300 PHE OXT O N N 301 PHE H H N N 302 PHE H2 H N N 303 PHE HA H N N 304 PHE HB2 H N N 305 PHE HB3 H N N 306 PHE HD1 H N N 307 PHE HD2 H N N 308 PHE HE1 H N N 309 PHE HE2 H N N 310 PHE HZ H N N 311 PHE HXT H N N 312 PRO N N N N 313 PRO CA C N S 314 PRO C C N N 315 PRO O O N N 316 PRO CB C N N 317 PRO CG C N N 318 PRO CD C N N 319 PRO OXT O N N 320 PRO H H N N 321 PRO HA H N N 322 PRO HB2 H N N 323 PRO HB3 H N N 324 PRO HG2 H N N 325 PRO HG3 H N N 326 PRO HD2 H N N 327 PRO HD3 H N N 328 PRO HXT H N N 329 SER N N N N 330 SER CA C N S 331 SER C C N N 332 SER O O N N 333 SER CB C N N 334 SER OG O N N 335 SER OXT O N N 336 SER H H N N 337 SER H2 H N N 338 SER HA H N N 339 SER HB2 H N N 340 SER HB3 H N N 341 SER HG H N N 342 SER HXT H N N 343 THR N N N N 344 THR CA C N S 345 THR C C N N 346 THR O O N N 347 THR CB C N R 348 THR OG1 O N N 349 THR CG2 C N N 350 THR OXT O N N 351 THR H H N N 352 THR H2 H N N 353 THR HA H N N 354 THR HB H N N 355 THR HG1 H N N 356 THR HG21 H N N 357 THR HG22 H N N 358 THR HG23 H N N 359 THR HXT H N N 360 TRP N N N N 361 TRP CA C N S 362 TRP C C N N 363 TRP O O N N 364 TRP CB C N N 365 TRP CG C Y N 366 TRP CD1 C Y N 367 TRP CD2 C Y N 368 TRP NE1 N Y N 369 TRP CE2 C Y N 370 TRP CE3 C Y N 371 TRP CZ2 C Y N 372 TRP CZ3 C Y N 373 TRP CH2 C Y N 374 TRP OXT O N N 375 TRP H H N N 376 TRP H2 H N N 377 TRP HA H N N 378 TRP HB2 H N N 379 TRP HB3 H N N 380 TRP HD1 H N N 381 TRP HE1 H N N 382 TRP HE3 H N N 383 TRP HZ2 H N N 384 TRP HZ3 H N N 385 TRP HH2 H N N 386 TRP HXT H N N 387 TYR N N N N 388 TYR CA C N S 389 TYR C C N N 390 TYR O O N N 391 TYR CB C N N 392 TYR CG C Y N 393 TYR CD1 C Y N 394 TYR CD2 C Y N 395 TYR CE1 C Y N 396 TYR CE2 C Y N 397 TYR CZ C Y N 398 TYR OH O N N 399 TYR OXT O N N 400 TYR H H N N 401 TYR H2 H N N 402 TYR HA H N N 403 TYR HB2 H N N 404 TYR HB3 H N N 405 TYR HD1 H N N 406 TYR HD2 H N N 407 TYR HE1 H N N 408 TYR HE2 H N N 409 TYR HH H N N 410 TYR HXT H N N 411 VAL N N N N 412 VAL CA C N S 413 VAL C C N N 414 VAL O O N N 415 VAL CB C N N 416 VAL CG1 C N N 417 VAL CG2 C N N 418 VAL OXT O N N 419 VAL H H N N 420 VAL H2 H N N 421 VAL HA H N N 422 VAL HB H N N 423 VAL HG11 H N N 424 VAL HG12 H N N 425 VAL HG13 H N N 426 VAL HG21 H N N 427 VAL HG22 H N N 428 VAL HG23 H N N 429 VAL HXT H N N 430 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A2G O5 C5 sing N N 1 A2G C1 O5 sing N N 2 A2G C1 C2 sing N N 3 A2G C1 H1 sing N N 4 A2G O1 C1 sing N N 5 A2G O1 HO1 sing N N 6 A2G C2 C3 sing N N 7 A2G C2 H2 sing N N 8 A2G N2 C2 sing N N 9 A2G N2 HN2 sing N N 10 A2G C3 C4 sing N N 11 A2G C3 O3 sing N N 12 A2G C3 H3 sing N N 13 A2G O3 HO3 sing N N 14 A2G C4 O4 sing N N 15 A2G C4 H4 sing N N 16 A2G O4 HO4 sing N N 17 A2G C5 C4 sing N N 18 A2G C5 C6 sing N N 19 A2G C5 H5 sing N N 20 A2G C6 O6 sing N N 21 A2G C6 H61 sing N N 22 A2G C7 N2 sing N N 23 A2G O7 C7 doub N N 24 A2G C8 C7 sing N N 25 A2G C8 H81 sing N N 26 A2G C8 H82 sing N N 27 A2G C8 H83 sing N N 28 A2G C6 H62 sing N N 29 A2G O6 HO6 sing N N 30 ALA N CA sing N N 31 ALA N H sing N N 32 ALA N H2 sing N N 33 ALA CA C sing N N 34 ALA CA CB sing N N 35 ALA CA HA sing N N 36 ALA C O doub N N 37 ALA C OXT sing N N 38 ALA CB HB1 sing N N 39 ALA CB HB2 sing N N 40 ALA CB HB3 sing N N 41 ALA OXT HXT sing N N 42 ARG N CA sing N N 43 ARG N H sing N N 44 ARG N H2 sing N N 45 ARG CA C sing N N 46 ARG CA CB sing N N 47 ARG CA HA sing N N 48 ARG C O doub N N 49 ARG C OXT sing N N 50 ARG CB CG sing N N 51 ARG CB HB2 sing N N 52 ARG CB HB3 sing N N 53 ARG CG CD sing N N 54 ARG CG HG2 sing N N 55 ARG CG HG3 sing N N 56 ARG CD NE sing N N 57 ARG CD HD2 sing N N 58 ARG CD HD3 sing N N 59 ARG NE CZ sing N N 60 ARG NE HE sing N N 61 ARG CZ NH1 sing N N 62 ARG CZ NH2 doub N N 63 ARG NH1 HH11 sing N N 64 ARG NH1 HH12 sing N N 65 ARG NH2 HH21 sing N N 66 ARG NH2 HH22 sing N N 67 ARG OXT HXT sing N N 68 ASN N CA sing N N 69 ASN N H sing N N 70 ASN N H2 sing N N 71 ASN CA C sing N N 72 ASN CA CB sing N N 73 ASN CA HA sing N N 74 ASN C O doub N N 75 ASN C OXT sing N N 76 ASN CB CG sing N N 77 ASN CB HB2 sing N N 78 ASN CB HB3 sing N N 79 ASN CG OD1 doub N N 80 ASN CG ND2 sing N N 81 ASN ND2 HD21 sing N N 82 ASN ND2 HD22 sing N N 83 ASN OXT HXT sing N N 84 ASP N CA sing N N 85 ASP N H sing N N 86 ASP N H2 sing N N 87 ASP CA C sing N N 88 ASP CA CB sing N N 89 ASP CA HA sing N N 90 ASP C O doub N N 91 ASP C OXT sing N N 92 ASP CB CG sing N N 93 ASP CB HB2 sing N N 94 ASP CB HB3 sing N N 95 ASP CG OD1 doub N N 96 ASP CG OD2 sing N N 97 ASP OD2 HD2 sing N N 98 ASP OXT HXT sing N N 99 CYS N CA sing N N 100 CYS N H sing N N 101 CYS N H2 sing N N 102 CYS CA C sing N N 103 CYS CA CB sing N N 104 CYS CA HA sing N N 105 CYS C O doub N N 106 CYS C OXT sing N N 107 CYS CB SG sing N N 108 CYS CB HB2 sing N N 109 CYS CB HB3 sing N N 110 CYS SG HG sing N N 111 CYS OXT HXT sing N N 112 EDO C1 O1 sing N N 113 EDO C1 C2 sing N N 114 EDO C1 H11 sing N N 115 EDO C1 H12 sing N N 116 EDO O1 HO1 sing N N 117 EDO C2 O2 sing N N 118 EDO C2 H21 sing N N 119 EDO C2 H22 sing N N 120 EDO O2 HO2 sing N N 121 GLN N CA sing N N 122 GLN N H sing N N 123 GLN N H2 sing N N 124 GLN CA C sing N N 125 GLN CA CB sing N N 126 GLN CA HA sing N N 127 GLN C O doub N N 128 GLN C OXT sing N N 129 GLN CB CG sing N N 130 GLN CB HB2 sing N N 131 GLN CB HB3 sing N N 132 GLN CG CD sing N N 133 GLN CG HG2 sing N N 134 GLN CG HG3 sing N N 135 GLN CD OE1 doub N N 136 GLN CD NE2 sing N N 137 GLN NE2 HE21 sing N N 138 GLN NE2 HE22 sing N N 139 GLN OXT HXT sing N N 140 GLU N CA sing N N 141 GLU N H sing N N 142 GLU N H2 sing N N 143 GLU CA C sing N N 144 GLU CA CB sing N N 145 GLU CA HA sing N N 146 GLU C O doub N N 147 GLU C OXT sing N N 148 GLU CB CG sing N N 149 GLU CB HB2 sing N N 150 GLU CB HB3 sing N N 151 GLU CG CD sing N N 152 GLU CG HG2 sing N N 153 GLU CG HG3 sing N N 154 GLU CD OE1 doub N N 155 GLU CD OE2 sing N N 156 GLU OE2 HE2 sing N N 157 GLU OXT HXT sing N N 158 GLY N CA sing N N 159 GLY N H sing N N 160 GLY N H2 sing N N 161 GLY CA C sing N N 162 GLY CA HA2 sing N N 163 GLY CA HA3 sing N N 164 GLY C O doub N N 165 GLY C OXT sing N N 166 GLY OXT HXT sing N N 167 HIS N CA sing N N 168 HIS N H sing N N 169 HIS N H2 sing N N 170 HIS CA C sing N N 171 HIS CA CB sing N N 172 HIS CA HA sing N N 173 HIS C O doub N N 174 HIS C OXT sing N N 175 HIS CB CG sing N N 176 HIS CB HB2 sing N N 177 HIS CB HB3 sing N N 178 HIS CG ND1 sing Y N 179 HIS CG CD2 doub Y N 180 HIS ND1 CE1 doub Y N 181 HIS ND1 HD1 sing N N 182 HIS CD2 NE2 sing Y N 183 HIS CD2 HD2 sing N N 184 HIS CE1 NE2 sing Y N 185 HIS CE1 HE1 sing N N 186 HIS NE2 HE2 sing N N 187 HIS OXT HXT sing N N 188 HOH O H1 sing N N 189 HOH O H2 sing N N 190 ILE N CA sing N N 191 ILE N H sing N N 192 ILE N H2 sing N N 193 ILE CA C sing N N 194 ILE CA CB sing N N 195 ILE CA HA sing N N 196 ILE C O doub N N 197 ILE C OXT sing N N 198 ILE CB CG1 sing N N 199 ILE CB CG2 sing N N 200 ILE CB HB sing N N 201 ILE CG1 CD1 sing N N 202 ILE CG1 HG12 sing N N 203 ILE CG1 HG13 sing N N 204 ILE CG2 HG21 sing N N 205 ILE CG2 HG22 sing N N 206 ILE CG2 HG23 sing N N 207 ILE CD1 HD11 sing N N 208 ILE CD1 HD12 sing N N 209 ILE CD1 HD13 sing N N 210 ILE OXT HXT sing N N 211 LEU N CA sing N N 212 LEU N H sing N N 213 LEU N H2 sing N N 214 LEU CA C sing N N 215 LEU CA CB sing N N 216 LEU CA HA sing N N 217 LEU C O doub N N 218 LEU C OXT sing N N 219 LEU CB CG sing N N 220 LEU CB HB2 sing N N 221 LEU CB HB3 sing N N 222 LEU CG CD1 sing N N 223 LEU CG CD2 sing N N 224 LEU CG HG sing N N 225 LEU CD1 HD11 sing N N 226 LEU CD1 HD12 sing N N 227 LEU CD1 HD13 sing N N 228 LEU CD2 HD21 sing N N 229 LEU CD2 HD22 sing N N 230 LEU CD2 HD23 sing N N 231 LEU OXT HXT sing N N 232 LYS N CA sing N N 233 LYS N H sing N N 234 LYS N H2 sing N N 235 LYS CA C sing N N 236 LYS CA CB sing N N 237 LYS CA HA sing N N 238 LYS C O doub N N 239 LYS C OXT sing N N 240 LYS CB CG sing N N 241 LYS CB HB2 sing N N 242 LYS CB HB3 sing N N 243 LYS CG CD sing N N 244 LYS CG HG2 sing N N 245 LYS CG HG3 sing N N 246 LYS CD CE sing N N 247 LYS CD HD2 sing N N 248 LYS CD HD3 sing N N 249 LYS CE NZ sing N N 250 LYS CE HE2 sing N N 251 LYS CE HE3 sing N N 252 LYS NZ HZ1 sing N N 253 LYS NZ HZ2 sing N N 254 LYS NZ HZ3 sing N N 255 LYS OXT HXT sing N N 256 MET N CA sing N N 257 MET N H sing N N 258 MET N H2 sing N N 259 MET CA C sing N N 260 MET CA CB sing N N 261 MET CA HA sing N N 262 MET C O doub N N 263 MET C OXT sing N N 264 MET CB CG sing N N 265 MET CB HB2 sing N N 266 MET CB HB3 sing N N 267 MET CG SD sing N N 268 MET CG HG2 sing N N 269 MET CG HG3 sing N N 270 MET SD CE sing N N 271 MET CE HE1 sing N N 272 MET CE HE2 sing N N 273 MET CE HE3 sing N N 274 MET OXT HXT sing N N 275 PHE N CA sing N N 276 PHE N H sing N N 277 PHE N H2 sing N N 278 PHE CA C sing N N 279 PHE CA CB sing N N 280 PHE CA HA sing N N 281 PHE C O doub N N 282 PHE C OXT sing N N 283 PHE CB CG sing N N 284 PHE CB HB2 sing N N 285 PHE CB HB3 sing N N 286 PHE CG CD1 doub Y N 287 PHE CG CD2 sing Y N 288 PHE CD1 CE1 sing Y N 289 PHE CD1 HD1 sing N N 290 PHE CD2 CE2 doub Y N 291 PHE CD2 HD2 sing N N 292 PHE CE1 CZ doub Y N 293 PHE CE1 HE1 sing N N 294 PHE CE2 CZ sing Y N 295 PHE CE2 HE2 sing N N 296 PHE CZ HZ sing N N 297 PHE OXT HXT sing N N 298 PRO N CA sing N N 299 PRO N CD sing N N 300 PRO N H sing N N 301 PRO CA C sing N N 302 PRO CA CB sing N N 303 PRO CA HA sing N N 304 PRO C O doub N N 305 PRO C OXT sing N N 306 PRO CB CG sing N N 307 PRO CB HB2 sing N N 308 PRO CB HB3 sing N N 309 PRO CG CD sing N N 310 PRO CG HG2 sing N N 311 PRO CG HG3 sing N N 312 PRO CD HD2 sing N N 313 PRO CD HD3 sing N N 314 PRO OXT HXT sing N N 315 SER N CA sing N N 316 SER N H sing N N 317 SER N H2 sing N N 318 SER CA C sing N N 319 SER CA CB sing N N 320 SER CA HA sing N N 321 SER C O doub N N 322 SER C OXT sing N N 323 SER CB OG sing N N 324 SER CB HB2 sing N N 325 SER CB HB3 sing N N 326 SER OG HG sing N N 327 SER OXT HXT sing N N 328 THR N CA sing N N 329 THR N H sing N N 330 THR N H2 sing N N 331 THR CA C sing N N 332 THR CA CB sing N N 333 THR CA HA sing N N 334 THR C O doub N N 335 THR C OXT sing N N 336 THR CB OG1 sing N N 337 THR CB CG2 sing N N 338 THR CB HB sing N N 339 THR OG1 HG1 sing N N 340 THR CG2 HG21 sing N N 341 THR CG2 HG22 sing N N 342 THR CG2 HG23 sing N N 343 THR OXT HXT sing N N 344 TRP N CA sing N N 345 TRP N H sing N N 346 TRP N H2 sing N N 347 TRP CA C sing N N 348 TRP CA CB sing N N 349 TRP CA HA sing N N 350 TRP C O doub N N 351 TRP C OXT sing N N 352 TRP CB CG sing N N 353 TRP CB HB2 sing N N 354 TRP CB HB3 sing N N 355 TRP CG CD1 doub Y N 356 TRP CG CD2 sing Y N 357 TRP CD1 NE1 sing Y N 358 TRP CD1 HD1 sing N N 359 TRP CD2 CE2 doub Y N 360 TRP CD2 CE3 sing Y N 361 TRP NE1 CE2 sing Y N 362 TRP NE1 HE1 sing N N 363 TRP CE2 CZ2 sing Y N 364 TRP CE3 CZ3 doub Y N 365 TRP CE3 HE3 sing N N 366 TRP CZ2 CH2 doub Y N 367 TRP CZ2 HZ2 sing N N 368 TRP CZ3 CH2 sing Y N 369 TRP CZ3 HZ3 sing N N 370 TRP CH2 HH2 sing N N 371 TRP OXT HXT sing N N 372 TYR N CA sing N N 373 TYR N H sing N N 374 TYR N H2 sing N N 375 TYR CA C sing N N 376 TYR CA CB sing N N 377 TYR CA HA sing N N 378 TYR C O doub N N 379 TYR C OXT sing N N 380 TYR CB CG sing N N 381 TYR CB HB2 sing N N 382 TYR CB HB3 sing N N 383 TYR CG CD1 doub Y N 384 TYR CG CD2 sing Y N 385 TYR CD1 CE1 sing Y N 386 TYR CD1 HD1 sing N N 387 TYR CD2 CE2 doub Y N 388 TYR CD2 HD2 sing N N 389 TYR CE1 CZ doub Y N 390 TYR CE1 HE1 sing N N 391 TYR CE2 CZ sing Y N 392 TYR CE2 HE2 sing N N 393 TYR CZ OH sing N N 394 TYR OH HH sing N N 395 TYR OXT HXT sing N N 396 VAL N CA sing N N 397 VAL N H sing N N 398 VAL N H2 sing N N 399 VAL CA C sing N N 400 VAL CA CB sing N N 401 VAL CA HA sing N N 402 VAL C O doub N N 403 VAL C OXT sing N N 404 VAL CB CG1 sing N N 405 VAL CB CG2 sing N N 406 VAL CB HB sing N N 407 VAL CG1 HG11 sing N N 408 VAL CG1 HG12 sing N N 409 VAL CG1 HG13 sing N N 410 VAL CG2 HG21 sing N N 411 VAL CG2 HG22 sing N N 412 VAL CG2 HG23 sing N N 413 VAL OXT HXT sing N N 414 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1SM3 _pdbx_initial_refinement_model.details 'PDB ENTRY 1SM3' # _atom_sites.entry_id 5A2L _atom_sites.fract_transf_matrix[1][1] 0.021701 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005014 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028417 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015483 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_