HEADER TRANSPORT PROTEIN 20-MAY-15 5A2N TITLE CRYSTAL STRUCTURE OF THE NITRATE TRANSPORTER NRT1.1 FROM ARABIDOPSIS TITLE 2 THALIANA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN NRT1/ PTR FAMILY 6.3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATNPF6.3, NITRATE TRANSPORTER 1.1, ATNRT1, NITRATE/CHLORATE COMPND 5 TRANSPORTER, PROTEIN CHLORINA 1, NRT1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BJ5460; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFED PDDGFP2; SOURCE 10 OTHER_DETAILS: TAIR ABRC STOCKS KEYWDS TRANSPORT PROTEIN, TRANSPORTER, NITRATE, MAJOR FACILITATOR KEYWDS 2 SUPERFAMILY, POT FAMILY, NRT1/PTR FAMILY, NPF FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR J.L.PARKER,S.NEWSTEAD REVDAT 3 08-MAY-24 5A2N 1 REMARK REVDAT 2 27-FEB-19 5A2N 1 REMARK REVDAT 1 17-JUN-15 5A2N 0 SPRSDE 17-JUN-15 5A2N 4CL4 JRNL AUTH J.L.PARKER,S.NEWSTEAD JRNL TITL MOLECULAR BASIS OF NITRATE UPTAKE BY THE PLANT NITRATE JRNL TITL 2 TRANSPORTER NRT1.1. JRNL REF NATURE V. 507 68 2014 JRNL REFN ISSN 0028-0836 JRNL PMID 24572366 JRNL DOI 10.1038/NATURE13116 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 21857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.279 REMARK 3 R VALUE (WORKING SET) : 0.278 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1105 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.88 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.26 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1247 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2598 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1192 REMARK 3 BIN R VALUE (WORKING SET) : 0.2595 REMARK 3 BIN FREE R VALUE : 0.2665 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.41 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 55 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 89.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.56320 REMARK 3 B22 (A**2) : -1.88670 REMARK 3 B33 (A**2) : -1.67650 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 1.063 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.676 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.649 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.677 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7634 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10504 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2510 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 100 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1126 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7634 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 998 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9300 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.26 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.60 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 25.36 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|21 - A|269 } REMARK 3 ORIGIN FOR THE GROUP (A): 87.9849 16.6764 69.8096 REMARK 3 T TENSOR REMARK 3 T11: -0.9666 T22: -0.3779 REMARK 3 T33: -0.6696 T12: -0.4360 REMARK 3 T13: 0.6066 T23: 0.0855 REMARK 3 L TENSOR REMARK 3 L11: 3.0377 L22: 7.3263 REMARK 3 L33: 3.4988 L12: 1.4915 REMARK 3 L13: 0.7225 L23: -3.2765 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.5416 S13: -0.4852 REMARK 3 S21: 0.9198 S22: -0.4914 S23: -0.1325 REMARK 3 S31: 0.7729 S32: -0.2278 S33: 0.4950 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|326 - A|573 } REMARK 3 ORIGIN FOR THE GROUP (A): 85.8239 -5.6895 74.1864 REMARK 3 T TENSOR REMARK 3 T11: 0.3364 T22: -0.5584 REMARK 3 T33: -0.0926 T12: -0.3000 REMARK 3 T13: 0.3801 T23: 0.2046 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 3.0027 REMARK 3 L33: 0.7057 L12: 1.1933 REMARK 3 L13: -0.3179 L23: -1.5617 REMARK 3 S TENSOR REMARK 3 S11: -0.0453 S12: -0.2410 S13: -0.9171 REMARK 3 S21: 0.1927 S22: -0.2432 S23: -0.3419 REMARK 3 S31: 0.7202 S32: -0.6569 S33: 0.2885 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|21 - B|229 } REMARK 3 ORIGIN FOR THE GROUP (A): 95.6976 38.7380 56.0828 REMARK 3 T TENSOR REMARK 3 T11: -0.8030 T22: -0.3928 REMARK 3 T33: -0.6762 T12: -0.3597 REMARK 3 T13: -0.0929 T23: -0.0984 REMARK 3 L TENSOR REMARK 3 L11: 0.2066 L22: 8.7142 REMARK 3 L33: 4.2712 L12: 5.2830 REMARK 3 L13: -3.6405 L23: -3.9665 REMARK 3 S TENSOR REMARK 3 S11: -0.0731 S12: 0.0213 S13: 0.1732 REMARK 3 S21: -0.5911 S22: -1.0239 S23: -1.0382 REMARK 3 S31: -0.7038 S32: 0.8838 S33: 1.0969 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|326 - B|573 } REMARK 3 ORIGIN FOR THE GROUP (A): 96.9304 58.8247 44.7897 REMARK 3 T TENSOR REMARK 3 T11: 0.3235 T22: -0.5911 REMARK 3 T33: -0.6413 T12: -0.4646 REMARK 3 T13: -0.1395 T23: 0.5414 REMARK 3 L TENSOR REMARK 3 L11: 0.2601 L22: 5.3653 REMARK 3 L33: 0.1153 L12: 1.0226 REMARK 3 L13: -2.3217 L23: -1.8871 REMARK 3 S TENSOR REMARK 3 S11: 0.0268 S12: 0.1177 S13: 0.6326 REMARK 3 S21: 0.0934 S22: -0.0833 S23: -0.7183 REMARK 3 S31: -0.3502 S32: 0.4713 S33: 0.0564 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5A2N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1290063829. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9163 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21870 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22 % PEG 400, 0.05 M SODIUM CITRATE PH REMARK 280 4.5, 0.07 M SODIUM CHLORIDE AND 1.5 % PEG 600 USING THE HANGING REMARK 280 DROP VAPOR DIFFUSION TECHNIQUE AT 4 CELSIUS., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 60.90000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.66000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.01500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.66000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.01500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 SER A 8 REMARK 465 ASP A 9 REMARK 465 ASP A 10 REMARK 465 ILE A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 ASP A 14 REMARK 465 ALA A 15 REMARK 465 TRP A 16 REMARK 465 ASP A 17 REMARK 465 PHE A 18 REMARK 465 GLN A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 124 REMARK 465 LEU A 125 REMARK 465 ARG A 126 REMARK 465 PRO A 127 REMARK 465 PRO A 128 REMARK 465 ARG A 129 REMARK 465 CYS A 130 REMARK 465 ASN A 131 REMARK 465 PRO A 132 REMARK 465 THR A 133 REMARK 465 THR A 134 REMARK 465 SER A 135 REMARK 465 SER A 136 REMARK 465 HIS A 137 REMARK 465 CYS A 138 REMARK 465 GLU A 139 REMARK 465 GLN A 140 REMARK 465 ALA A 141 REMARK 465 LEU A 270 REMARK 465 PRO A 271 REMARK 465 ALA A 272 REMARK 465 ASP A 273 REMARK 465 PRO A 274 REMARK 465 SER A 275 REMARK 465 TYR A 276 REMARK 465 LEU A 277 REMARK 465 TYR A 278 REMARK 465 ASP A 279 REMARK 465 VAL A 280 REMARK 465 ASP A 281 REMARK 465 ASP A 282 REMARK 465 ILE A 283 REMARK 465 ILE A 284 REMARK 465 ALA A 285 REMARK 465 ALA A 286 REMARK 465 GLU A 287 REMARK 465 GLY A 288 REMARK 465 SER A 289 REMARK 465 MET A 290 REMARK 465 LYS A 291 REMARK 465 GLY A 292 REMARK 465 LYS A 293 REMARK 465 GLN A 294 REMARK 465 LYS A 295 REMARK 465 LEU A 296 REMARK 465 PRO A 297 REMARK 465 HIS A 298 REMARK 465 THR A 299 REMARK 465 GLU A 300 REMARK 465 GLN A 301 REMARK 465 PHE A 302 REMARK 465 ARG A 303 REMARK 465 SER A 304 REMARK 465 LEU A 305 REMARK 465 ASP A 306 REMARK 465 LYS A 307 REMARK 465 ALA A 308 REMARK 465 ALA A 309 REMARK 465 ILE A 310 REMARK 465 ARG A 311 REMARK 465 ASP A 312 REMARK 465 GLN A 313 REMARK 465 GLU A 314 REMARK 465 ALA A 315 REMARK 465 GLY A 316 REMARK 465 VAL A 317 REMARK 465 THR A 318 REMARK 465 SER A 319 REMARK 465 ASN A 320 REMARK 465 VAL A 321 REMARK 465 PHE A 322 REMARK 465 ASN A 323 REMARK 465 LYS A 324 REMARK 465 TRP A 325 REMARK 465 GLY A 452 REMARK 465 PRO A 453 REMARK 465 THR A 454 REMARK 465 VAL A 455 REMARK 465 LYS A 456 REMARK 465 THR A 457 REMARK 465 LEU A 458 REMARK 465 PRO A 459 REMARK 465 LEU A 460 REMARK 465 ALA A 574 REMARK 465 GLU A 575 REMARK 465 VAL A 576 REMARK 465 GLY A 577 REMARK 465 ILE A 578 REMARK 465 GLU A 579 REMARK 465 LEU A 580 REMARK 465 ASP A 581 REMARK 465 ASP A 582 REMARK 465 GLU A 583 REMARK 465 PRO A 584 REMARK 465 SER A 585 REMARK 465 ILE A 586 REMARK 465 PRO A 587 REMARK 465 MET A 588 REMARK 465 GLY A 589 REMARK 465 HIS A 590 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 PRO B 4 REMARK 465 GLU B 5 REMARK 465 THR B 6 REMARK 465 LYS B 7 REMARK 465 SER B 8 REMARK 465 ASP B 9 REMARK 465 ASP B 10 REMARK 465 ILE B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 ASP B 14 REMARK 465 ALA B 15 REMARK 465 TRP B 16 REMARK 465 ASP B 17 REMARK 465 PHE B 18 REMARK 465 GLN B 19 REMARK 465 GLY B 20 REMARK 465 GLY B 124 REMARK 465 LEU B 125 REMARK 465 ARG B 126 REMARK 465 PRO B 127 REMARK 465 PRO B 128 REMARK 465 ARG B 129 REMARK 465 CYS B 130 REMARK 465 ASN B 131 REMARK 465 PRO B 132 REMARK 465 THR B 133 REMARK 465 THR B 134 REMARK 465 SER B 135 REMARK 465 SER B 136 REMARK 465 HIS B 137 REMARK 465 CYS B 138 REMARK 465 GLU B 139 REMARK 465 GLN B 140 REMARK 465 ALA B 141 REMARK 465 LEU B 270 REMARK 465 PRO B 271 REMARK 465 ALA B 272 REMARK 465 ASP B 273 REMARK 465 PRO B 274 REMARK 465 SER B 275 REMARK 465 TYR B 276 REMARK 465 LEU B 277 REMARK 465 TYR B 278 REMARK 465 ASP B 279 REMARK 465 VAL B 280 REMARK 465 ASP B 281 REMARK 465 ASP B 282 REMARK 465 ILE B 283 REMARK 465 ILE B 284 REMARK 465 ALA B 285 REMARK 465 ALA B 286 REMARK 465 GLU B 287 REMARK 465 GLY B 288 REMARK 465 SER B 289 REMARK 465 MET B 290 REMARK 465 LYS B 291 REMARK 465 GLY B 292 REMARK 465 LYS B 293 REMARK 465 GLN B 294 REMARK 465 LYS B 295 REMARK 465 LEU B 296 REMARK 465 PRO B 297 REMARK 465 HIS B 298 REMARK 465 THR B 299 REMARK 465 GLU B 300 REMARK 465 GLN B 301 REMARK 465 PHE B 302 REMARK 465 ARG B 303 REMARK 465 SER B 304 REMARK 465 LEU B 305 REMARK 465 ASP B 306 REMARK 465 LYS B 307 REMARK 465 ALA B 308 REMARK 465 ALA B 309 REMARK 465 ILE B 310 REMARK 465 ARG B 311 REMARK 465 ASP B 312 REMARK 465 GLN B 313 REMARK 465 GLU B 314 REMARK 465 ALA B 315 REMARK 465 GLY B 316 REMARK 465 VAL B 317 REMARK 465 THR B 318 REMARK 465 SER B 319 REMARK 465 ASN B 320 REMARK 465 VAL B 321 REMARK 465 PHE B 322 REMARK 465 ASN B 323 REMARK 465 LYS B 324 REMARK 465 TRP B 325 REMARK 465 GLY B 452 REMARK 465 PRO B 453 REMARK 465 THR B 454 REMARK 465 VAL B 455 REMARK 465 LYS B 456 REMARK 465 THR B 457 REMARK 465 LEU B 458 REMARK 465 PRO B 459 REMARK 465 LEU B 460 REMARK 465 ALA B 574 REMARK 465 GLU B 575 REMARK 465 VAL B 576 REMARK 465 GLY B 577 REMARK 465 ILE B 578 REMARK 465 GLU B 579 REMARK 465 LEU B 580 REMARK 465 ASP B 581 REMARK 465 ASP B 582 REMARK 465 GLU B 583 REMARK 465 PRO B 584 REMARK 465 SER B 585 REMARK 465 ILE B 586 REMARK 465 PRO B 587 REMARK 465 MET B 588 REMARK 465 GLY B 589 REMARK 465 HIS B 590 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 22 -65.82 -91.61 REMARK 500 ALA A 23 -156.46 -151.84 REMARK 500 THR A 28 -66.32 -129.10 REMARK 500 ASN A 54 -104.80 -77.83 REMARK 500 LEU A 55 -60.29 43.47 REMARK 500 THR A 94 -19.68 -141.33 REMARK 500 ILE A 121 -8.93 -154.18 REMARK 500 LEU A 153 -70.58 -78.04 REMARK 500 SER A 166 -22.08 -156.75 REMARK 500 GLN A 174 -21.80 -151.92 REMARK 500 GLU A 177 -80.43 -46.08 REMARK 500 GLU A 179 95.70 70.02 REMARK 500 LYS A 181 0.50 59.80 REMARK 500 ARG A 183 -39.60 -31.89 REMARK 500 THR A 206 -78.71 -83.22 REMARK 500 GLN A 212 -62.04 -95.33 REMARK 500 ARG A 217 -3.43 -56.63 REMARK 500 PHE A 235 -70.80 -52.36 REMARK 500 THR A 239 62.37 -69.34 REMARK 500 ASN A 240 -70.35 -157.73 REMARK 500 ARG A 241 32.23 -70.06 REMARK 500 SER A 250 -157.97 -90.05 REMARK 500 MET A 252 -50.69 -15.89 REMARK 500 LEU A 343 -59.36 -23.16 REMARK 500 LEU A 351 3.10 -68.30 REMARK 500 THR A 361 -76.41 -109.54 REMARK 500 ASP A 371 84.45 15.82 REMARK 500 ARG A 372 -87.23 -62.58 REMARK 500 SER A 383 4.67 -52.95 REMARK 500 ARG A 401 -46.45 -172.78 REMARK 500 VAL A 402 41.55 -94.44 REMARK 500 PHE A 411 86.60 -44.30 REMARK 500 TYR A 413 -96.98 -91.77 REMARK 500 PRO A 419 -83.86 -81.01 REMARK 500 ASP A 485 26.62 -75.02 REMARK 500 PHE A 486 -86.38 -106.67 REMARK 500 LYS A 493 -13.67 -38.08 REMARK 500 MET A 498 48.06 -103.11 REMARK 500 SER A 499 23.69 -168.76 REMARK 500 LEU A 502 5.39 -65.89 REMARK 500 LEU A 507 -71.25 -63.87 REMARK 500 PRO B 22 -144.32 -101.56 REMARK 500 ASP B 24 134.35 -30.18 REMARK 500 THR B 28 -55.91 -139.58 REMARK 500 ALA B 35 -75.76 -64.14 REMARK 500 LEU B 38 -1.83 -59.97 REMARK 500 THR B 60 -85.13 -84.97 REMARK 500 HIS B 64 -0.15 67.52 REMARK 500 LEU B 96 0.01 33.82 REMARK 500 ASP B 173 86.84 -69.42 REMARK 500 REMARK 500 THIS ENTRY HAS 83 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A2O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NITRATE TRANSPORTER NRT1.1 FROM REMARK 900 ARABIDOPSIS THALIANA IN COMPLEX WITH NITRATE. DBREF 5A2N A 1 590 UNP Q05085 PTR7_ARATH 1 590 DBREF 5A2N B 1 590 UNP Q05085 PTR7_ARATH 1 590 SEQRES 1 A 590 MET SER LEU PRO GLU THR LYS SER ASP ASP ILE LEU LEU SEQRES 2 A 590 ASP ALA TRP ASP PHE GLN GLY ARG PRO ALA ASP ARG SER SEQRES 3 A 590 LYS THR GLY GLY TRP ALA SER ALA ALA MET ILE LEU CYS SEQRES 4 A 590 ILE GLU ALA VAL GLU ARG LEU THR THR LEU GLY ILE GLY SEQRES 5 A 590 VAL ASN LEU VAL THR TYR LEU THR GLY THR MET HIS LEU SEQRES 6 A 590 GLY ASN ALA THR ALA ALA ASN THR VAL THR ASN PHE LEU SEQRES 7 A 590 GLY THR SER PHE MET LEU CYS LEU LEU GLY GLY PHE ILE SEQRES 8 A 590 ALA ASP THR PHE LEU GLY ARG TYR LEU THR ILE ALA ILE SEQRES 9 A 590 PHE ALA ALA ILE GLN ALA THR GLY VAL SER ILE LEU THR SEQRES 10 A 590 LEU SER THR ILE ILE PRO GLY LEU ARG PRO PRO ARG CYS SEQRES 11 A 590 ASN PRO THR THR SER SER HIS CYS GLU GLN ALA SER GLY SEQRES 12 A 590 ILE GLN LEU THR VAL LEU TYR LEU ALA LEU TYR LEU THR SEQRES 13 A 590 ALA LEU GLY THR GLY GLY VAL LYS ALA SER VAL SER GLY SEQRES 14 A 590 PHE GLY SER ASP GLN PHE ASP GLU THR GLU PRO LYS GLU SEQRES 15 A 590 ARG SER LYS MET THR TYR PHE PHE ASN ARG PHE PHE PHE SEQRES 16 A 590 CYS ILE ASN VAL GLY SER LEU LEU ALA VAL THR VAL LEU SEQRES 17 A 590 VAL TYR VAL GLN ASP ASP VAL GLY ARG LYS TRP GLY TYR SEQRES 18 A 590 GLY ILE CYS ALA PHE ALA ILE VAL LEU ALA LEU SER VAL SEQRES 19 A 590 PHE LEU ALA GLY THR ASN ARG TYR ARG PHE LYS LYS LEU SEQRES 20 A 590 ILE GLY SER PRO MET THR GLN VAL ALA ALA VAL ILE VAL SEQRES 21 A 590 ALA ALA TRP ARG ASN ARG LYS LEU GLU LEU PRO ALA ASP SEQRES 22 A 590 PRO SER TYR LEU TYR ASP VAL ASP ASP ILE ILE ALA ALA SEQRES 23 A 590 GLU GLY SER MET LYS GLY LYS GLN LYS LEU PRO HIS THR SEQRES 24 A 590 GLU GLN PHE ARG SER LEU ASP LYS ALA ALA ILE ARG ASP SEQRES 25 A 590 GLN GLU ALA GLY VAL THR SER ASN VAL PHE ASN LYS TRP SEQRES 26 A 590 THR LEU SER THR LEU THR ASP VAL GLU GLU VAL LYS GLN SEQRES 27 A 590 ILE VAL ARG MET LEU PRO ILE TRP ALA THR CYS ILE LEU SEQRES 28 A 590 PHE TRP THR VAL HIS ALA GLN LEU THR THR LEU SER VAL SEQRES 29 A 590 ALA GLN SER GLU THR LEU ASP ARG SER ILE GLY SER PHE SEQRES 30 A 590 GLU ILE PRO PRO ALA SER MET ALA VAL PHE TYR VAL GLY SEQRES 31 A 590 GLY LEU LEU LEU THR THR ALA VAL TYR ASP ARG VAL ALA SEQRES 32 A 590 ILE ARG LEU CYS LYS LYS LEU PHE ASN TYR PRO HIS GLY SEQRES 33 A 590 LEU ARG PRO LEU GLN ARG ILE GLY LEU GLY LEU PHE PHE SEQRES 34 A 590 GLY SER MET ALA MET ALA VAL ALA ALA LEU VAL GLU LEU SEQRES 35 A 590 LYS ARG LEU ARG THR ALA HIS ALA HIS GLY PRO THR VAL SEQRES 36 A 590 LYS THR LEU PRO LEU GLY PHE TYR LEU LEU ILE PRO GLN SEQRES 37 A 590 TYR LEU ILE VAL GLY ILE GLY GLU ALA LEU ILE TYR THR SEQRES 38 A 590 GLY GLN LEU ASP PHE PHE LEU ARG GLU CYS PRO LYS GLY SEQRES 39 A 590 MET LYS GLY MET SER THR GLY LEU LEU LEU SER THR LEU SEQRES 40 A 590 ALA LEU GLY PHE PHE PHE SER SER VAL LEU VAL THR ILE SEQRES 41 A 590 VAL GLU LYS PHE THR GLY LYS ALA HIS PRO TRP ILE ALA SEQRES 42 A 590 ASP ASP LEU ASN LYS GLY ARG LEU TYR ASN PHE TYR TRP SEQRES 43 A 590 LEU VAL ALA VAL LEU VAL ALA LEU ASN PHE LEU ILE PHE SEQRES 44 A 590 LEU VAL PHE SER LYS TRP TYR VAL TYR LYS GLU LYS ARG SEQRES 45 A 590 LEU ALA GLU VAL GLY ILE GLU LEU ASP ASP GLU PRO SER SEQRES 46 A 590 ILE PRO MET GLY HIS SEQRES 1 B 590 MET SER LEU PRO GLU THR LYS SER ASP ASP ILE LEU LEU SEQRES 2 B 590 ASP ALA TRP ASP PHE GLN GLY ARG PRO ALA ASP ARG SER SEQRES 3 B 590 LYS THR GLY GLY TRP ALA SER ALA ALA MET ILE LEU CYS SEQRES 4 B 590 ILE GLU ALA VAL GLU ARG LEU THR THR LEU GLY ILE GLY SEQRES 5 B 590 VAL ASN LEU VAL THR TYR LEU THR GLY THR MET HIS LEU SEQRES 6 B 590 GLY ASN ALA THR ALA ALA ASN THR VAL THR ASN PHE LEU SEQRES 7 B 590 GLY THR SER PHE MET LEU CYS LEU LEU GLY GLY PHE ILE SEQRES 8 B 590 ALA ASP THR PHE LEU GLY ARG TYR LEU THR ILE ALA ILE SEQRES 9 B 590 PHE ALA ALA ILE GLN ALA THR GLY VAL SER ILE LEU THR SEQRES 10 B 590 LEU SER THR ILE ILE PRO GLY LEU ARG PRO PRO ARG CYS SEQRES 11 B 590 ASN PRO THR THR SER SER HIS CYS GLU GLN ALA SER GLY SEQRES 12 B 590 ILE GLN LEU THR VAL LEU TYR LEU ALA LEU TYR LEU THR SEQRES 13 B 590 ALA LEU GLY THR GLY GLY VAL LYS ALA SER VAL SER GLY SEQRES 14 B 590 PHE GLY SER ASP GLN PHE ASP GLU THR GLU PRO LYS GLU SEQRES 15 B 590 ARG SER LYS MET THR TYR PHE PHE ASN ARG PHE PHE PHE SEQRES 16 B 590 CYS ILE ASN VAL GLY SER LEU LEU ALA VAL THR VAL LEU SEQRES 17 B 590 VAL TYR VAL GLN ASP ASP VAL GLY ARG LYS TRP GLY TYR SEQRES 18 B 590 GLY ILE CYS ALA PHE ALA ILE VAL LEU ALA LEU SER VAL SEQRES 19 B 590 PHE LEU ALA GLY THR ASN ARG TYR ARG PHE LYS LYS LEU SEQRES 20 B 590 ILE GLY SER PRO MET THR GLN VAL ALA ALA VAL ILE VAL SEQRES 21 B 590 ALA ALA TRP ARG ASN ARG LYS LEU GLU LEU PRO ALA ASP SEQRES 22 B 590 PRO SER TYR LEU TYR ASP VAL ASP ASP ILE ILE ALA ALA SEQRES 23 B 590 GLU GLY SER MET LYS GLY LYS GLN LYS LEU PRO HIS THR SEQRES 24 B 590 GLU GLN PHE ARG SER LEU ASP LYS ALA ALA ILE ARG ASP SEQRES 25 B 590 GLN GLU ALA GLY VAL THR SER ASN VAL PHE ASN LYS TRP SEQRES 26 B 590 THR LEU SER THR LEU THR ASP VAL GLU GLU VAL LYS GLN SEQRES 27 B 590 ILE VAL ARG MET LEU PRO ILE TRP ALA THR CYS ILE LEU SEQRES 28 B 590 PHE TRP THR VAL HIS ALA GLN LEU THR THR LEU SER VAL SEQRES 29 B 590 ALA GLN SER GLU THR LEU ASP ARG SER ILE GLY SER PHE SEQRES 30 B 590 GLU ILE PRO PRO ALA SER MET ALA VAL PHE TYR VAL GLY SEQRES 31 B 590 GLY LEU LEU LEU THR THR ALA VAL TYR ASP ARG VAL ALA SEQRES 32 B 590 ILE ARG LEU CYS LYS LYS LEU PHE ASN TYR PRO HIS GLY SEQRES 33 B 590 LEU ARG PRO LEU GLN ARG ILE GLY LEU GLY LEU PHE PHE SEQRES 34 B 590 GLY SER MET ALA MET ALA VAL ALA ALA LEU VAL GLU LEU SEQRES 35 B 590 LYS ARG LEU ARG THR ALA HIS ALA HIS GLY PRO THR VAL SEQRES 36 B 590 LYS THR LEU PRO LEU GLY PHE TYR LEU LEU ILE PRO GLN SEQRES 37 B 590 TYR LEU ILE VAL GLY ILE GLY GLU ALA LEU ILE TYR THR SEQRES 38 B 590 GLY GLN LEU ASP PHE PHE LEU ARG GLU CYS PRO LYS GLY SEQRES 39 B 590 MET LYS GLY MET SER THR GLY LEU LEU LEU SER THR LEU SEQRES 40 B 590 ALA LEU GLY PHE PHE PHE SER SER VAL LEU VAL THR ILE SEQRES 41 B 590 VAL GLU LYS PHE THR GLY LYS ALA HIS PRO TRP ILE ALA SEQRES 42 B 590 ASP ASP LEU ASN LYS GLY ARG LEU TYR ASN PHE TYR TRP SEQRES 43 B 590 LEU VAL ALA VAL LEU VAL ALA LEU ASN PHE LEU ILE PHE SEQRES 44 B 590 LEU VAL PHE SER LYS TRP TYR VAL TYR LYS GLU LYS ARG SEQRES 45 B 590 LEU ALA GLU VAL GLY ILE GLU LEU ASP ASP GLU PRO SER SEQRES 46 B 590 ILE PRO MET GLY HIS HELIX 1 1 TRP A 31 VAL A 53 1 23 HELIX 2 2 LEU A 55 THR A 62 1 8 HELIX 3 3 GLY A 66 LEU A 84 1 19 HELIX 4 4 LEU A 84 PHE A 95 1 12 HELIX 5 5 ARG A 98 THR A 120 1 23 HELIX 6 6 ILE A 144 SER A 172 1 29 HELIX 7 7 LYS A 181 ARG A 192 1 12 HELIX 8 8 CYS A 196 ASP A 214 1 19 HELIX 9 9 GLY A 216 GLY A 238 1 23 HELIX 10 10 PRO A 251 ASN A 265 1 15 HELIX 11 11 ARG A 266 GLU A 269 5 4 HELIX 12 12 THR A 326 THR A 331 1 6 HELIX 13 13 THR A 331 LYS A 337 1 7 HELIX 14 14 MET A 342 THR A 361 1 20 HELIX 15 15 VAL A 364 THR A 369 1 6 HELIX 16 16 PRO A 381 MET A 384 5 4 HELIX 17 17 ALA A 385 ASP A 400 1 16 HELIX 18 18 ALA A 403 LEU A 410 1 8 HELIX 19 19 LEU A 420 HIS A 451 1 32 HELIX 20 20 LEU A 465 LEU A 488 1 24 HELIX 21 21 PRO A 492 LYS A 496 5 5 HELIX 22 22 THR A 500 GLY A 526 1 27 HELIX 23 23 LEU A 541 VAL A 567 1 27 HELIX 24 24 GLY B 30 LEU B 38 1 9 HELIX 25 25 LEU B 38 THR B 62 1 25 HELIX 26 26 GLY B 66 PHE B 95 1 30 HELIX 27 27 TYR B 99 THR B 120 1 22 HELIX 28 28 SER B 142 LEU B 155 1 14 HELIX 29 29 LEU B 155 SER B 172 1 18 HELIX 30 30 LYS B 181 ASP B 214 1 34 HELIX 31 31 GLY B 216 THR B 239 1 24 HELIX 32 32 PRO B 251 ALA B 261 1 11 HELIX 33 33 ALA B 261 ARG B 266 1 6 HELIX 34 34 THR B 326 THR B 331 1 6 HELIX 35 35 ASP B 332 LYS B 337 1 6 HELIX 36 36 MET B 342 ILE B 350 1 9 HELIX 37 37 LEU B 351 THR B 361 1 11 HELIX 38 38 THR B 361 GLU B 368 1 8 HELIX 39 39 PRO B 380 MET B 384 5 5 HELIX 40 40 ALA B 385 LEU B 410 1 26 HELIX 41 41 LEU B 420 ARG B 446 1 27 HELIX 42 42 LEU B 465 LEU B 488 1 24 HELIX 43 43 SER B 499 LYS B 523 1 25 HELIX 44 44 LEU B 541 ARG B 572 1 32 SHEET 1 AA 2 SER A 373 ILE A 374 0 SHEET 2 AA 2 PHE A 377 GLU A 378 -1 O PHE A 377 N ILE A 374 SHEET 1 BA 2 SER B 373 ILE B 374 0 SHEET 2 BA 2 PHE B 377 GLU B 378 -1 O PHE B 377 N ILE B 374 CISPEP 1 SER A 250 PRO A 251 0 -4.42 CISPEP 2 GLY A 526 LYS A 527 0 1.58 CISPEP 3 SER B 250 PRO B 251 0 -3.38 CRYST1 121.800 124.030 153.320 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008210 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006522 0.00000 MTRIX1 1 -0.995400 -0.043370 -0.085340 188.40000 1 MTRIX2 1 -0.036950 -0.648300 0.760500 1.89500 1 MTRIX3 1 -0.088310 0.760100 0.643700 8.92300 1