HEADER HYDROLASE 02-JUN-15 5A3R TITLE CRYSTAL STRUCTURE OF THE (SR) CALCIUM ATPASE E2.BEF3- COMPLEX BOUND TO TITLE 2 TNP-AMPPCP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SERCA1, SR CA(2+)-ATPASE 1, CALCIUM PUMP 1, CALCIUM- COMPND 5 TRANSPORTING ATPASE SARCOPLASMIC RETICULUM TYPE, FAST TWITCH SKELETAL COMPND 6 MUSCLE ISOFORM, ENDOPLASMIC RETICULUM CLASS 1/2 CA(2+) ATPASE, SARCOP COMPND 7 SARCOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 8 EC: 3.6.3.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 ORGAN: HIND LEG; SOURCE 6 TISSUE: SKELETAL MUSCLE KEYWDS HYDROLASE, SARCO(ENDO)PLASMIC, SARCO(ENDO)PLASMIC RETICULUM CALCIUM KEYWDS 2 ATPASE, BERYLLIUM FLUORIDE, P-TYPE ATPASE, SERCA, TRINITROPHENYL- KEYWDS 3 NUCLEOTIDE ANALOGES, TNP-AMPPCP, CALCIUM TRANSPORT, INHIBITION, KEYWDS 4 TRANSITION STATE EXPDTA X-RAY DIFFRACTION AUTHOR J.D.CLAUSEN,M.BUBLITZ,B.ARNOU,C.OLESEN,J.P.ANDERSEN,J.V.MOLLER, AUTHOR 2 P.NISSEN REVDAT 5 06-NOV-24 5A3R 1 REMARK REVDAT 4 10-JAN-24 5A3R 1 REMARK LINK REVDAT 3 15-MAY-19 5A3R 1 REMARK LINK REVDAT 2 20-APR-16 5A3R 1 JRNL REVDAT 1 13-APR-16 5A3R 0 JRNL AUTH J.D.CLAUSEN,M.BUBLITZ,B.ARNOU,C.OLESEN,J.P.ANDERSEN, JRNL AUTH 2 J.V.MOLLER,P.NISSEN JRNL TITL CRYSTAL STRUCTURE OF THE VANADATE-INHIBITED CA(2+)-ATPASE. JRNL REF STRUCTURE V. 24 617 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27050689 JRNL DOI 10.1016/J.STR.2016.02.018 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 29584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.4937 - 6.7799 1.00 2755 144 0.1951 0.2055 REMARK 3 2 6.7799 - 5.3827 1.00 2612 137 0.2341 0.2616 REMARK 3 3 5.3827 - 4.7026 1.00 2590 138 0.1846 0.2404 REMARK 3 4 4.7026 - 4.2728 1.00 2539 132 0.1769 0.2398 REMARK 3 5 4.2728 - 3.9666 1.00 2548 133 0.1922 0.2348 REMARK 3 6 3.9666 - 3.7328 1.00 2545 131 0.2091 0.2492 REMARK 3 7 3.7328 - 3.5459 1.00 2531 133 0.2292 0.2886 REMARK 3 8 3.5459 - 3.3916 0.99 2482 132 0.2609 0.3175 REMARK 3 9 3.3916 - 3.2610 1.00 2524 149 0.2793 0.3513 REMARK 3 10 3.2610 - 3.1485 0.99 2478 137 0.2926 0.3388 REMARK 3 11 3.1485 - 3.0501 0.99 2474 140 0.3184 0.3962 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 81.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7880 REMARK 3 ANGLE : 0.604 10683 REMARK 3 CHIRALITY : 0.031 1234 REMARK 3 PLANARITY : 0.003 1361 REMARK 3 DIHEDRAL : 11.804 4761 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 48:111) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6363 -11.9631 -51.0263 REMARK 3 T TENSOR REMARK 3 T11: 1.3337 T22: 1.4804 REMARK 3 T33: 0.7255 T12: 0.1562 REMARK 3 T13: 0.0367 T23: -0.0970 REMARK 3 L TENSOR REMARK 3 L11: 4.2116 L22: 4.3863 REMARK 3 L33: 8.7714 L12: 4.2075 REMARK 3 L13: 5.9558 L23: 5.7930 REMARK 3 S TENSOR REMARK 3 S11: -0.3314 S12: 0.0344 S13: 0.5216 REMARK 3 S21: -0.4100 S22: -0.2177 S23: -0.0180 REMARK 3 S31: 1.3100 S32: 0.3389 S33: 0.5129 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 248:329 OR RESID 997) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1410 -11.7721 -53.2023 REMARK 3 T TENSOR REMARK 3 T11: 1.4434 T22: 1.2837 REMARK 3 T33: 0.5188 T12: 0.0418 REMARK 3 T13: -0.2074 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 3.0249 L22: 2.8321 REMARK 3 L33: 7.8619 L12: 3.6830 REMARK 3 L13: 2.7375 L23: 2.7227 REMARK 3 S TENSOR REMARK 3 S11: -0.3784 S12: -0.0346 S13: 0.6223 REMARK 3 S21: -0.9553 S22: -0.0157 S23: 0.5142 REMARK 3 S31: 0.7064 S32: 0.1745 S33: 0.1349 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 741:994 OR RESID 1000) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5763 6.5168 -56.9758 REMARK 3 T TENSOR REMARK 3 T11: 1.3625 T22: 1.3450 REMARK 3 T33: 0.6245 T12: -0.2406 REMARK 3 T13: -0.1421 T23: -0.0951 REMARK 3 L TENSOR REMARK 3 L11: 0.7951 L22: 0.2772 REMARK 3 L33: 5.3950 L12: 0.4701 REMARK 3 L13: 2.1731 L23: 1.2640 REMARK 3 S TENSOR REMARK 3 S11: -0.3751 S12: 0.1416 S13: -0.0149 REMARK 3 S21: -0.2695 S22: 0.1125 S23: 0.0204 REMARK 3 S31: -1.1434 S32: 0.5269 S33: 0.2034 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 1:41 OR RESID 123:237) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1367 -15.4840 1.5659 REMARK 3 T TENSOR REMARK 3 T11: 0.4239 T22: 0.7692 REMARK 3 T33: 0.8485 T12: -0.0509 REMARK 3 T13: -0.1093 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 6.7507 L22: 6.1310 REMARK 3 L33: 5.5345 L12: -2.8082 REMARK 3 L13: 1.9809 L23: 0.6303 REMARK 3 S TENSOR REMARK 3 S11: 0.3987 S12: 0.1899 S13: -1.4467 REMARK 3 S21: 0.2714 S22: 0.1666 S23: 0.0311 REMARK 3 S31: 0.4616 S32: 0.2286 S33: -0.4396 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 42:47 OR RESID 112:122) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0786 -6.4419 -23.5938 REMARK 3 T TENSOR REMARK 3 T11: 0.9287 T22: 1.3828 REMARK 3 T33: 0.7171 T12: 0.2522 REMARK 3 T13: -0.1859 T23: -0.1331 REMARK 3 L TENSOR REMARK 3 L11: 0.9891 L22: 3.5366 REMARK 3 L33: 8.7810 L12: -0.3786 REMARK 3 L13: 1.8074 L23: 1.8716 REMARK 3 S TENSOR REMARK 3 S11: 0.6213 S12: -0.3689 S13: -0.6502 REMARK 3 S21: 0.3429 S22: -0.2344 S23: -1.1340 REMARK 3 S31: 0.8313 S32: -0.2065 S33: -0.4861 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 238:247) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9258 -13.6697 -22.7008 REMARK 3 T TENSOR REMARK 3 T11: 0.7774 T22: 1.1221 REMARK 3 T33: 0.9740 T12: -0.0091 REMARK 3 T13: -0.2105 T23: -0.2584 REMARK 3 L TENSOR REMARK 3 L11: 6.7232 L22: 8.1893 REMARK 3 L33: 5.0140 L12: -1.1997 REMARK 3 L13: 5.6718 L23: -2.4192 REMARK 3 S TENSOR REMARK 3 S11: 0.8346 S12: 1.8688 S13: -1.3521 REMARK 3 S21: -0.6284 S22: 1.2848 S23: 0.0114 REMARK 3 S31: 1.1237 S32: 2.2117 S33: -2.0301 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 330:358 OR RESID 604:740 OR RESID REMARK 3 995:996) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8694 -0.1218 -12.4207 REMARK 3 T TENSOR REMARK 3 T11: 0.4009 T22: 1.0320 REMARK 3 T33: 0.4951 T12: -0.0229 REMARK 3 T13: -0.0628 T23: -0.0955 REMARK 3 L TENSOR REMARK 3 L11: 1.4423 L22: 4.7518 REMARK 3 L33: 5.8497 L12: 0.8376 REMARK 3 L13: 0.9534 L23: 1.1103 REMARK 3 S TENSOR REMARK 3 S11: -0.0645 S12: 0.1280 S13: -0.2702 REMARK 3 S21: -0.3151 S22: 0.0164 S23: 0.4580 REMARK 3 S31: -0.2916 S32: -0.3394 S33: 0.0230 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESID 359:603) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1710 17.8319 10.7955 REMARK 3 T TENSOR REMARK 3 T11: 0.4327 T22: 0.8289 REMARK 3 T33: 0.3572 T12: -0.0263 REMARK 3 T13: 0.0042 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 4.0070 L22: 3.1446 REMARK 3 L33: 4.4320 L12: -0.3925 REMARK 3 L13: -0.1358 L23: 0.1483 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.3450 S13: 0.0884 REMARK 3 S21: 0.3154 S22: -0.0540 S23: -0.1993 REMARK 3 S31: 0.0468 S32: 0.1985 S33: 0.0507 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5A3R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1290063924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29733 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 80.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 1.05000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3B9B REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37% (W/V) PEG400, 25 MM MGCL2, AND 50 REMARK 280 MM GLYCINE. THE CRYSTALLIZATION DROP WAS EQUILIBRATED AT 12 REMARK 280 DEGREES C, AND THE CRYSTAL WAS FLASH FROZEN 6 DAYS AFTER SET-UP., REMARK 280 PH 6.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.76500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.84950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.48350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 113.84950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.76500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.48350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 36 -32.43 -135.44 REMARK 500 GLU A 45 48.47 -101.92 REMARK 500 GLU A 80 -12.80 61.09 REMARK 500 MET A 126 -168.31 -125.45 REMARK 500 HIS A 190 -168.34 -124.78 REMARK 500 PRO A 195 23.64 -79.88 REMARK 500 ARG A 198 50.41 -92.49 REMARK 500 ASN A 275 49.62 -94.23 REMARK 500 HIS A 284 95.88 -61.69 REMARK 500 GLU A 309 -48.22 38.87 REMARK 500 ARG A 334 -80.88 -67.95 REMARK 500 LYS A 352 -78.36 -92.85 REMARK 500 THR A 355 -68.76 -108.83 REMARK 500 MET A 366 127.57 -171.26 REMARK 500 ASP A 370 -64.99 -99.04 REMARK 500 ASP A 373 56.10 -106.08 REMARK 500 SER A 387 7.88 -161.89 REMARK 500 PRO A 391 14.69 -68.80 REMARK 500 ASN A 453 74.04 54.38 REMARK 500 LYS A 502 18.63 59.42 REMARK 500 GLU A 588 54.66 -91.09 REMARK 500 ALA A 649 -60.05 -161.18 REMARK 500 ASP A 703 -28.01 -152.05 REMARK 500 SER A 722 50.86 -98.80 REMARK 500 VAL A 798 -66.40 -121.74 REMARK 500 ASP A 951 -45.45 105.76 REMARK 500 ASN A 990 18.20 59.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1008 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 90 OE2 REMARK 620 2 GLU A 309 OE1 104.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1006 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 244 OE1 REMARK 620 2 LEU A 711 O 110.7 REMARK 620 3 GLU A 732 OE2 80.0 133.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1009 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BFD A 351 OD2 REMARK 620 2 THR A 353 O 96.5 REMARK 620 3 ASP A 703 OD1 102.8 93.3 REMARK 620 4 HOH A2001 O 162.3 65.8 80.7 REMARK 620 5 HOH A2002 O 120.1 138.8 96.0 76.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1007 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DL5 A1000 O1G REMARK 620 2 DL5 A1000 O2B 84.0 REMARK 620 3 HOH A2004 O 97.1 82.6 REMARK 620 4 HOH A2005 O 146.8 75.4 105.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DL5 A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1009 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5A3Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE (SR) CALCIUM ATPASE E2- VANADATE COMPLEX REMARK 900 BOUND TO THAPSIGARGIN AND TNP-AMPPCP REMARK 900 RELATED ID: 5A3S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE (SR) CALCIUM ATPASE E2- VANADATE COMPLEX REMARK 900 BOUND TO THAPSIGARGIN AND TNP-ATP REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS ISOFORM (2) DIFFERS FROM THE CANONICAL REMARK 999 SEQUENCE BY THE RESIDUES 994-1001 IN WHICH DPEDERRK IS REMARK 999 REPLACED BY G DBREF 5A3R A 1 994 UNP P04191 AT2A1_RABIT 1 994 SEQRES 1 A 994 MET GLU ALA ALA HIS SER LYS SER THR GLU GLU CYS LEU SEQRES 2 A 994 ALA TYR PHE GLY VAL SER GLU THR THR GLY LEU THR PRO SEQRES 3 A 994 ASP GLN VAL LYS ARG HIS LEU GLU LYS TYR GLY HIS ASN SEQRES 4 A 994 GLU LEU PRO ALA GLU GLU GLY LYS SER LEU TRP GLU LEU SEQRES 5 A 994 VAL ILE GLU GLN PHE GLU ASP LEU LEU VAL ARG ILE LEU SEQRES 6 A 994 LEU LEU ALA ALA CYS ILE SER PHE VAL LEU ALA TRP PHE SEQRES 7 A 994 GLU GLU GLY GLU GLU THR ILE THR ALA PHE VAL GLU PRO SEQRES 8 A 994 PHE VAL ILE LEU LEU ILE LEU ILE ALA ASN ALA ILE VAL SEQRES 9 A 994 GLY VAL TRP GLN GLU ARG ASN ALA GLU ASN ALA ILE GLU SEQRES 10 A 994 ALA LEU LYS GLU TYR GLU PRO GLU MET GLY LYS VAL TYR SEQRES 11 A 994 ARG ALA ASP ARG LYS SER VAL GLN ARG ILE LYS ALA ARG SEQRES 12 A 994 ASP ILE VAL PRO GLY ASP ILE VAL GLU VAL ALA VAL GLY SEQRES 13 A 994 ASP LYS VAL PRO ALA ASP ILE ARG ILE LEU SER ILE LYS SEQRES 14 A 994 SER THR THR LEU ARG VAL ASP GLN SER ILE LEU THR GLY SEQRES 15 A 994 GLU SER VAL SER VAL ILE LYS HIS THR GLU PRO VAL PRO SEQRES 16 A 994 ASP PRO ARG ALA VAL ASN GLN ASP LYS LYS ASN MET LEU SEQRES 17 A 994 PHE SER GLY THR ASN ILE ALA ALA GLY LYS ALA LEU GLY SEQRES 18 A 994 ILE VAL ALA THR THR GLY VAL SER THR GLU ILE GLY LYS SEQRES 19 A 994 ILE ARG ASP GLN MET ALA ALA THR GLU GLN ASP LYS THR SEQRES 20 A 994 PRO LEU GLN GLN LYS LEU ASP GLU PHE GLY GLU GLN LEU SEQRES 21 A 994 SER LYS VAL ILE SER LEU ILE CYS VAL ALA VAL TRP LEU SEQRES 22 A 994 ILE ASN ILE GLY HIS PHE ASN ASP PRO VAL HIS GLY GLY SEQRES 23 A 994 SER TRP ILE ARG GLY ALA ILE TYR TYR PHE LYS ILE ALA SEQRES 24 A 994 VAL ALA LEU ALA VAL ALA ALA ILE PRO GLU GLY LEU PRO SEQRES 25 A 994 ALA VAL ILE THR THR CYS LEU ALA LEU GLY THR ARG ARG SEQRES 26 A 994 MET ALA LYS LYS ASN ALA ILE VAL ARG SER LEU PRO SER SEQRES 27 A 994 VAL GLU THR LEU GLY CYS THR SER VAL ILE CYS SER BFD SEQRES 28 A 994 LYS THR GLY THR LEU THR THR ASN GLN MET SER VAL CYS SEQRES 29 A 994 LYS MET PHE ILE ILE ASP LYS VAL ASP GLY ASP PHE CYS SEQRES 30 A 994 SER LEU ASN GLU PHE SER ILE THR GLY SER THR TYR ALA SEQRES 31 A 994 PRO GLU GLY GLU VAL LEU LYS ASN ASP LYS PRO ILE ARG SEQRES 32 A 994 SER GLY GLN PHE ASP GLY LEU VAL GLU LEU ALA THR ILE SEQRES 33 A 994 CYS ALA LEU CYS ASN ASP SER SER LEU ASP PHE ASN GLU SEQRES 34 A 994 THR LYS GLY VAL TYR GLU LYS VAL GLY GLU ALA THR GLU SEQRES 35 A 994 THR ALA LEU THR THR LEU VAL GLU LYS MET ASN VAL PHE SEQRES 36 A 994 ASN THR GLU VAL ARG ASN LEU SER LYS VAL GLU ARG ALA SEQRES 37 A 994 ASN ALA CYS ASN SER VAL ILE ARG GLN LEU MET LYS LYS SEQRES 38 A 994 GLU PHE THR LEU GLU PHE SER ARG ASP ARG LYS SER MET SEQRES 39 A 994 SER VAL TYR CYS SER PRO ALA LYS SER SER ARG ALA ALA SEQRES 40 A 994 VAL GLY ASN LYS MET PHE VAL LYS GLY ALA PRO GLU GLY SEQRES 41 A 994 VAL ILE ASP ARG CYS ASN TYR VAL ARG VAL GLY THR THR SEQRES 42 A 994 ARG VAL PRO MET THR GLY PRO VAL LYS GLU LYS ILE LEU SEQRES 43 A 994 SER VAL ILE LYS GLU TRP GLY THR GLY ARG ASP THR LEU SEQRES 44 A 994 ARG CYS LEU ALA LEU ALA THR ARG ASP THR PRO PRO LYS SEQRES 45 A 994 ARG GLU GLU MET VAL LEU ASP ASP SER SER ARG PHE MET SEQRES 46 A 994 GLU TYR GLU THR ASP LEU THR PHE VAL GLY VAL VAL GLY SEQRES 47 A 994 MET LEU ASP PRO PRO ARG LYS GLU VAL MET GLY SER ILE SEQRES 48 A 994 GLN LEU CYS ARG ASP ALA GLY ILE ARG VAL ILE MET ILE SEQRES 49 A 994 THR GLY ASP ASN LYS GLY THR ALA ILE ALA ILE CYS ARG SEQRES 50 A 994 ARG ILE GLY ILE PHE GLY GLU ASN GLU GLU VAL ALA ASP SEQRES 51 A 994 ARG ALA TYR THR GLY ARG GLU PHE ASP ASP LEU PRO LEU SEQRES 52 A 994 ALA GLU GLN ARG GLU ALA CYS ARG ARG ALA CYS CYS PHE SEQRES 53 A 994 ALA ARG VAL GLU PRO SER HIS LYS SER LYS ILE VAL GLU SEQRES 54 A 994 TYR LEU GLN SER TYR ASP GLU ILE THR ALA MET THR GLY SEQRES 55 A 994 ASP GLY VAL ASN ASP ALA PRO ALA LEU LYS LYS ALA GLU SEQRES 56 A 994 ILE GLY ILE ALA MET GLY SER GLY THR ALA VAL ALA LYS SEQRES 57 A 994 THR ALA SER GLU MET VAL LEU ALA ASP ASP ASN PHE SER SEQRES 58 A 994 THR ILE VAL ALA ALA VAL GLU GLU GLY ARG ALA ILE TYR SEQRES 59 A 994 ASN ASN MET LYS GLN PHE ILE ARG TYR LEU ILE SER SER SEQRES 60 A 994 ASN VAL GLY GLU VAL VAL CYS ILE PHE LEU THR ALA ALA SEQRES 61 A 994 LEU GLY LEU PRO GLU ALA LEU ILE PRO VAL GLN LEU LEU SEQRES 62 A 994 TRP VAL ASN LEU VAL THR ASP GLY LEU PRO ALA THR ALA SEQRES 63 A 994 LEU GLY PHE ASN PRO PRO ASP LEU ASP ILE MET ASP ARG SEQRES 64 A 994 PRO PRO ARG SER PRO LYS GLU PRO LEU ILE SER GLY TRP SEQRES 65 A 994 LEU PHE PHE ARG TYR MET ALA ILE GLY GLY TYR VAL GLY SEQRES 66 A 994 ALA ALA THR VAL GLY ALA ALA ALA TRP TRP PHE MET TYR SEQRES 67 A 994 ALA GLU ASP GLY PRO GLY VAL THR TYR HIS GLN LEU THR SEQRES 68 A 994 HIS PHE MET GLN CYS THR GLU ASP HIS PRO HIS PHE GLU SEQRES 69 A 994 GLY LEU ASP CYS GLU ILE PHE GLU ALA PRO GLU PRO MET SEQRES 70 A 994 THR MET ALA LEU SER VAL LEU VAL THR ILE GLU MET CYS SEQRES 71 A 994 ASN ALA LEU ASN SER LEU SER GLU ASN GLN SER LEU MET SEQRES 72 A 994 ARG MET PRO PRO TRP VAL ASN ILE TRP LEU LEU GLY SER SEQRES 73 A 994 ILE CYS LEU SER MET SER LEU HIS PHE LEU ILE LEU TYR SEQRES 74 A 994 VAL ASP PRO LEU PRO MET ILE PHE LYS LEU LYS ALA LEU SEQRES 75 A 994 ASP LEU THR GLN TRP LEU MET VAL LEU LYS ILE SER LEU SEQRES 76 A 994 PRO VAL ILE GLY LEU ASP GLU ILE LEU LYS PHE ILE ALA SEQRES 77 A 994 ARG ASN TYR LEU GLU GLY MODRES 5A3R BFD A 351 ASP ASPARTATE BERYLLIUM TRIFLUORIDE HET BFD A 351 12 HET DL5 A1000 46 HET K A1006 1 HET MG A1007 1 HET MG A1008 1 HET MG A1009 1 HETNAM BFD ASPARTATE BERYLLIUM TRIFLUORIDE HETNAM DL5 SPIRO(2,4,6-TRINITROBENZENE[1,2A]-O2',O3'-METHYLENE- HETNAM 2 DL5 ADENOSINE (BETA,GAMMA-METHYLENE)TRIPHOSPHATE HETNAM K POTASSIUM ION HETNAM MG MAGNESIUM ION HETSYN DL5 TNP-AMPPCP FORMUL 1 BFD C4 H6 BE F3 N O4 2- FORMUL 2 DL5 C17 H19 N8 O18 P3 FORMUL 3 K K 1+ FORMUL 4 MG 3(MG 2+) FORMUL 7 HOH *7(H2 O) HELIX 1 1 ALA A 3 LYS A 7 5 5 HELIX 2 2 SER A 8 GLY A 17 1 10 HELIX 3 3 THR A 25 LEU A 33 1 9 HELIX 4 4 VAL A 53 GLU A 58 5 6 HELIX 5 5 ASP A 59 ILE A 71 1 13 HELIX 6 6 PHE A 73 PHE A 78 1 6 HELIX 7 7 PHE A 88 GLU A 117 1 30 HELIX 8 8 ARG A 143 ILE A 145 5 3 HELIX 9 9 GLN A 177 GLY A 182 1 6 HELIX 10 10 VAL A 200 LYS A 204 5 5 HELIX 11 11 THR A 226 SER A 229 5 4 HELIX 12 12 THR A 230 THR A 242 1 13 HELIX 13 13 THR A 247 ASN A 275 1 29 HELIX 14 14 ILE A 293 ALA A 305 1 13 HELIX 15 15 GLY A 310 LYS A 329 1 20 HELIX 16 16 SER A 335 GLU A 340 5 6 HELIX 17 17 GLU A 340 THR A 345 5 6 HELIX 18 18 LYS A 352 LEU A 356 1 5 HELIX 19 19 ARG A 403 GLN A 406 5 4 HELIX 20 20 PHE A 407 CYS A 420 1 14 HELIX 21 21 GLU A 439 ASN A 453 1 15 HELIX 22 22 ASN A 469 ARG A 476 1 8 HELIX 23 23 ALA A 517 ASP A 523 1 7 HELIX 24 24 THR A 538 THR A 554 1 17 HELIX 25 25 GLY A 555 THR A 558 5 4 HELIX 26 26 LYS A 572 MET A 576 5 5 HELIX 27 27 ASP A 580 SER A 582 5 3 HELIX 28 28 ARG A 583 GLU A 588 1 6 HELIX 29 29 GLU A 606 ALA A 617 1 12 HELIX 30 30 ASN A 628 GLY A 640 1 13 HELIX 31 31 GLY A 655 LEU A 661 1 7 HELIX 32 32 PRO A 662 ALA A 669 1 8 HELIX 33 33 GLU A 680 TYR A 694 1 15 HELIX 34 34 GLY A 704 ASN A 706 5 3 HELIX 35 35 ASP A 707 ALA A 714 1 8 HELIX 36 36 THR A 724 ALA A 730 1 7 HELIX 37 37 PHE A 740 GLY A 782 1 43 HELIX 38 38 ILE A 788 VAL A 798 1 11 HELIX 39 39 LEU A 802 LEU A 807 1 6 HELIX 40 40 GLY A 808 ASN A 810 5 3 HELIX 41 41 ASP A 813 MET A 817 5 5 HELIX 42 42 SER A 830 TYR A 858 1 29 HELIX 43 43 THR A 866 HIS A 872 1 7 HELIX 44 44 PHE A 873 CYS A 876 5 4 HELIX 45 45 HIS A 880 GLU A 884 5 5 HELIX 46 46 ASP A 887 GLU A 892 5 6 HELIX 47 47 ALA A 893 SER A 915 1 23 HELIX 48 48 ASN A 930 VAL A 950 1 21 HELIX 49 49 LEU A 953 LYS A 958 1 6 HELIX 50 50 THR A 965 LEU A 975 1 11 HELIX 51 51 LEU A 975 ILE A 987 1 13 SHEET 1 AA 6 GLN A 138 LYS A 141 0 SHEET 2 AA 6 MET A 126 TYR A 130 -1 O GLY A 127 N ILE A 140 SHEET 3 AA 6 ILE A 150 VAL A 153 -1 O ILE A 150 N TYR A 130 SHEET 4 AA 6 ALA A 219 THR A 225 -1 O ALA A 219 N VAL A 153 SHEET 5 AA 6 ASP A 162 ILE A 168 -1 O ASP A 162 N ALA A 224 SHEET 6 AA 6 MET A 207 LEU A 208 -1 O LEU A 208 N ILE A 163 SHEET 1 AB 3 VAL A 187 ILE A 188 0 SHEET 2 AB 3 ARG A 174 ASP A 176 -1 O VAL A 175 N VAL A 187 SHEET 3 AB 3 ASN A 213 ALA A 216 -1 O ASN A 213 N ASP A 176 SHEET 1 AC 8 ALA A 331 VAL A 333 0 SHEET 2 AC 8 MET A 733 LEU A 735 -1 O VAL A 734 N ILE A 332 SHEET 3 AC 8 ILE A 716 MET A 720 1 O GLY A 717 N MET A 733 SHEET 4 AC 8 THR A 698 GLY A 702 1 O MET A 700 N ILE A 718 SHEET 5 AC 8 VAL A 347 SER A 350 1 O VAL A 347 N ALA A 699 SHEET 6 AC 8 ARG A 620 ILE A 624 1 O ARG A 620 N ILE A 348 SHEET 7 AC 8 CYS A 675 ALA A 677 1 N PHE A 676 O MET A 623 SHEET 8 AC 8 ALA A 652 THR A 654 1 O TYR A 653 N ALA A 677 SHEET 1 AD 8 VAL A 395 LEU A 396 0 SHEET 2 AD 8 PHE A 376 ILE A 384 -1 O SER A 383 N LEU A 396 SHEET 3 AD 8 SER A 362 ASP A 373 -1 O CYS A 364 N ILE A 384 SHEET 4 AD 8 LEU A 591 LEU A 600 -1 O VAL A 594 N ILE A 369 SHEET 5 AD 8 ARG A 560 ARG A 567 -1 O ARG A 560 N MET A 599 SHEET 6 AD 8 LYS A 511 GLY A 516 -1 O MET A 512 N ARG A 567 SHEET 7 AD 8 SER A 493 PRO A 500 -1 O MET A 494 N LYS A 515 SHEET 8 AD 8 MET A 479 LEU A 485 -1 O LYS A 480 N SER A 499 SHEET 1 AE 6 VAL A 395 LEU A 396 0 SHEET 2 AE 6 PHE A 376 ILE A 384 -1 O SER A 383 N LEU A 396 SHEET 3 AE 6 SER A 362 ASP A 373 -1 O CYS A 364 N ILE A 384 SHEET 4 AE 6 LEU A 591 LEU A 600 -1 O VAL A 594 N ILE A 369 SHEET 5 AE 6 CYS A 525 VAL A 530 1 N ASN A 526 O LEU A 591 SHEET 6 AE 6 THR A 533 PRO A 536 -1 O THR A 533 N VAL A 530 SHEET 1 AF 2 SER A 424 ASN A 428 0 SHEET 2 AF 2 VAL A 433 VAL A 437 -1 O VAL A 433 N ASN A 428 SSBOND 1 CYS A 876 CYS A 888 1555 1555 2.04 LINK C SER A 350 N BFD A 351 1555 1555 1.33 LINK C BFD A 351 N LYS A 352 1555 1555 1.33 LINK OE2 GLU A 90 MG MG A1008 1555 1555 2.08 LINK OE1 GLN A 244 K K A1006 1555 1555 3.10 LINK OE1 GLU A 309 MG MG A1008 1555 1555 2.07 LINK OD2 BFD A 351 MG MG A1009 1555 1555 1.72 LINK O THR A 353 MG MG A1009 1555 1555 2.16 LINK OD1 ASP A 703 MG MG A1009 1555 1555 2.10 LINK O LEU A 711 K K A1006 1555 1555 3.26 LINK OE2 GLU A 732 K K A1006 1555 1555 2.82 LINK O1G DL5 A1000 MG MG A1007 1555 1555 2.15 LINK O2B DL5 A1000 MG MG A1007 1555 1555 2.05 LINK MG MG A1007 O HOH A2004 1555 1555 2.11 LINK MG MG A1007 O HOH A2005 1555 1555 2.10 LINK MG MG A1009 O HOH A2001 1555 1555 2.06 LINK MG MG A1009 O HOH A2002 1555 1555 2.20 SITE 1 AC1 22 ARG A 174 ILE A 188 GLU A 439 THR A 441 SITE 2 AC1 22 GLU A 442 PHE A 487 LYS A 492 SER A 493 SITE 3 AC1 22 MET A 494 LYS A 515 GLY A 516 ALA A 517 SITE 4 AC1 22 ARG A 560 CYS A 561 LEU A 562 GLU A 884 SITE 5 AC1 22 MG A1007 HOH A2003 HOH A2004 HOH A2005 SITE 6 AC1 22 HOH A2006 HOH A2007 SITE 1 AC2 5 GLN A 244 LEU A 711 ALA A 714 GLY A 717 SITE 2 AC2 5 GLU A 732 SITE 1 AC3 3 DL5 A1000 HOH A2004 HOH A2005 SITE 1 AC4 2 GLU A 90 GLU A 309 SITE 1 AC5 6 BFD A 351 THR A 353 ASP A 703 ASP A 707 SITE 2 AC5 6 HOH A2001 HOH A2002 CRYST1 57.530 114.967 227.699 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017382 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004392 0.00000